Literature DB >> 21257769

Genome sequence of Paracoccus sp. Strain TRP, a Chlorpyrifos Biodegrader.

Kang Li1, Shenghui Wang, Yanhua Shi, Jie Qu, Yi Zhai, Lili Xu, Yongxue Xu, Jinlong Song, Lili Liu, M Anisur Rahman, Yanchun Yan.   

Abstract

Paracoccus sp. strain TRP, isolated from activated sludge, could completely biodegrade chlorpyrifos and 3,5,6-trichloro-2-pyridinol. Here we report the draft genome sequence of Paracoccus sp. strain TRP, which could be used to predict genes for xenobiotic biodegradation and metabolism.

Entities:  

Mesh：

Substances：

Year:  2011        PMID： 21257769      PMCID： PMC3067656          DOI： 10.1128/JB.00014-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25.

Authors:  Xiang-hua Xiong; Shuang Han; Jian-hua Wang; Ze-hui Jiang; Wei Chen; Ning Jia; Hong-li Wei; Hong Cheng; Yan-xin Yang; Bin Zhu; Song You; Jian-yong He; Wei Hou; Meng-xia Chen; Chun-jie Yu; Ying-hui Jiao; Wei-cai Zhang
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

2.  Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity.

Authors:  Mingchao Ma; Cuicui Wang; Yanqin Ding; Li Li; Delong Shen; Xin Jiang; Dawei Guan; Fengming Cao; Huijun Chen; Ruihua Feng; Xuan Wang; Yifan Ge; Liangtong Yao; Xiaohui Bing; Xiaohong Yang; Jun Li; Binghai Du
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

5.  Biodegradation of insecticide carbofuran by Paracoccus sp. YM3.

Authors:  Xiang Peng; Jing S Zhang; Ying Y Li; Wen Li; Gang M Xu; Yan C Yan
Journal:  J Environ Sci Health B       Date:  2008-09       Impact factor: 1.990

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  Biodegradation of pyridine by Paracoccus sp. KT-5 immobilized on bamboo-based activated carbon.

Authors:  Qiao Lin; Wen Donghui; Wang Jianlong
Journal:  Bioresour Technol       Date:  2010-03-11       Impact factor: 9.642

8.  Biomineralization of N,N-dimethylformamide by Paracoccus sp. strain DMF.

Authors:  Shiv Swaroop; P Sughosh; Gurunath Ramanathan
Journal:  J Hazard Mater       Date:  2009-06-06       Impact factor: 10.588

Review 9.  Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility.

Authors:  S C Baker; S J Ferguson; B Ludwig; M D Page; O M Richter; R J van Spanning
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

10.  Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:  David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962
  10 in total
  7 in total

1.  Patterns of Endemism and Habitat Selection in Coalbed Microbial Communities.

Authors:  Christopher E Lawson; Cameron R Strachan; Dominique D Williams; Susan Koziel; Steven J Hallam; Karen Budwill
Journal:  Appl Environ Microbiol       Date:  2015-09-04       Impact factor: 4.792

2.  Novel gene clusters and metabolic pathway involved in 3,5,6-trichloro-2-pyridinol degradation by Ralstonia sp. strain T6.

Authors:  Jingquan Li; Yan Huang; Ying Hou; Xiangmin Li; Hui Cao; Zhongli Cui
Journal:  Appl Environ Microbiol       Date:  2013-09-20       Impact factor: 4.792

3.  Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria).

Authors:  Lukasz Dziewit; Jadwiga Baj; Magdalena Szuplewska; Anna Maj; Mateusz Tabin; Anna Czyzkowska; Grazyna Skrzypczyk; Marcin Adamczuk; Tomasz Sitarek; Piotr Stawinski; Agnieszka Tudek; Katarzyna Wanasz; Ewa Wardal; Ewa Piechucka; Dariusz Bartosik
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

4.  Draft Genome Sequence and Annotation of Paracoccus versutus MAL 1HM19, a Nitrate-Reducing, Sulfide-Oxidizing Bacterium.

Authors:  Wannapawn Watsuntorn; Thammaporn Kojonna; Eldon R Rene; Piet N L Lens; Warawut Chulalaksananukul
Journal:  Microbiol Resour Announc       Date:  2020-03-05

5.  Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686.

Authors:  Lukasz Dziewit; Jakub Czarnecki; Emilia Prochwicz; Daniel Wibberg; Andreas Schlüter; Alfred Pühler; Dariusz Bartosik
Journal:  Front Microbiol       Date:  2015-08-21       Impact factor: 5.640

6.  Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids.

Authors:  Lukasz Dziewit; Jakub Czarnecki; Daniel Wibberg; Monika Radlinska; Paulina Mrozek; Michal Szymczak; Andreas Schlüter; Alfred Pühler; Dariusz Bartosik
Journal:  BMC Genomics       Date:  2014-02-12       Impact factor: 3.969

7.  Rapid Biodegradation of the Organophosphorus Insecticide Chlorpyrifos by Cupriavidus nantongensis X1T.

Authors:  Taozhong Shi; Liancheng Fang; Han Qin; Yifei Chen; Xiangwei Wu; Rimao Hua
Journal:  Int J Environ Res Public Health       Date:  2019-11-20       Impact factor: 3.390
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.