| Literature DB >> 21247498 |
Charles C Hsu1, Wenhong L Kao, Michael W Steffes, Tejal Gambir, Frederick L Brancati, Charles W Heilig, Alan R Shuldiner, Eric A Boerwinkle, Josef Coresh.
Abstract
BACKGROUND: Evidence suggests glucose transporter-1 (GLUT1) genetic variation affects diabetic nephropathy and albuminuria. Our aim was to evaluate associations with albuminuria of six GLUT1 single nucleotide polymorphisms(SNPs), particularly XbaI and the previously associated Enhancer-2 (Enh2) SNP.Entities:
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Year: 2011 PMID: 21247498 PMCID: PMC3034664 DOI: 10.1186/1471-2350-12-16
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1. The genomic structure of GLUT1 is illustrated with its 10 exons and three putative enhancers[5]. Genotyped polymorphisms located in intron 2 include the intron-2 SNP (rs841858), and the Enh2(rs841847) and XbaI (rs841853) SNPs which have been previously associated with diabetic nephropathy[5-7]. In the distal promoter region, the Promoter SNP (rs841839) was genotyped (located between putative enhancers 3 and 1). We also included two SNPs in intron 1, intron-1 SNP(rs3768043) and intron-2 SNP(rs2297977). No SNP was associated with albuminuria among all African Americans or among all European Americans, including XbaI (p = 0.08) and Enh2 (p = 0.08). None of the tagging SNPs were able to reach a Bonferroni adjusted level of statistical significance. †Bonferroni corrected level of statistical significance p = 0.01.
Baseline Characteristics. Clinical characteristics of study subjects by Race and Albuminuric Status
| Stage 1 | Stage 2 | |||||||
|---|---|---|---|---|---|---|---|---|
| | 1646 | 157 | 5945 | 374 | ||||
| | 63.2 | (5.6) | 64.9 | (5.6)*** | 62.8 | (5.6) | 65.2 | (5.6)*** |
| | 802 | (48.7) | 92 | (58.6)* | 2655 | (44.7) | 199 | (53.2)** |
| | 731 | (44.4) | 111 | (70.7)*** | 2266 | (38.1) | 269 | (71.9)*** |
| | 480 | (29.2) | 84 | (53.5)*** | 428 | (7.2) | 103 | (27.5)*** |
| | 29.0 | (5.5) | 30.0 | (6.3)* | 28.0 | (5.0) | 28.8 | (6.0)** |
| | 126.8 | (17.4) | 135.7 | (20.4)*** | 124.4 | (17.8) | 138.3 | (23.2)*** |
| | 69.7 | (10.0) | 70.0 | (11.1) | 69.5 | (9.6) | 72.5 | (12.1)*** |
| | 115.4 | (34.9) | 134.4 | (52.2)*** | 102.1 | (21.2) | 116.8 | (43.4)*** |
| | 81.7 | (16.9) | 75.0 | (25.7)*** | 80.7 | (16.1) | 76.1 | (22.3)*** |
| | 3.7 | (1.8,6.7) | 102.6 | (47.4,275.0)*** | 3.6 | (2.0,6.5) | 74.8 | (44.4,166.7)*** |
| | 987 | 148 | 875 | 146 | ||||
| | 61.3 | (5.5) | 63.0 | (5.8)††† | 61.8 | (5.7) | 62.5 | (5.7) |
| | 336 | (34.0) | 44 | (29.7) | 324 | (37.0) | 54 | (37.0) |
| | 615 | (62.3) | 127 | (85.8)††† | 558 | (63.8) | 127 | (87.0) ††† |
| | 217 | (22.0) | 80 | (54.1)††† | 196 | (22.4) | 80 | (54.8) ††† |
| | 30.7 | (6.5) | 30.8 | (6.6) | 30.3 | (5.9) | 31.4 | (6.6) † |
| | 131.2 | (18.4) | 144.4 | (23.2)††† | 132.0 | (18.9) | 144.8 | (22.5) ††† |
| | 75.0 | (10.0) | 78.2 | (13.0)††† | 75.7 | (10.1) | 78.5 | (11.9) †† |
| | 114.3 | (39.6) | 136.4 | (62.2)††† | 112.7 | (38.5) | 137.9 | (62.8) ††† |
| | 91.5 | (19.0) | 83.0 | (29.8) ††† | 90.9 | (21.0) | 80.7 | (29.3) ††† |
| | 1.9 | (0.7,4.7) | 95.9 | (47.2,363.2)††† | 2.2 | (0.8,5.2) | 81.7 | (44.7,249.7) ††† |
Data are means (SD), number (%), or for ACR median (25%ile, 75%ile). European Americans: * P < 0.05; **P < 0.01; ***P < 0.001.
African Americans: †P < 0.05; ††P < 0.01; †††P < 0.001.
§Individuals with fasting glucose measured. Evaluation set (European Americans n = 1582 controls and n = 150 cases; African Americans n = 922 controls and n = 113 cases). Valdiation set (European Americans n = 5822 controls and n = 356 cases; African Americans n = 787 controls and n = 113 cases).
Stage 1GLUT1 Enh2 and XbaI Risk genotype distributions among case and control subjects and odds ratio of albuminuria, by diabetes and race
| European Americans | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 480 | 84 | 1166 | 73 | |||||||
| | (94.6) | (88.1) | 0.025 | 1.00 | (94.7) | (93.1) | 0.574 | 1.00 | ||
| | (5.4) | (11.9) | 2.36 | (1.09 - 5.09)* | (5.3) | (6.9) | 1.31 | (0.51 - 3.36) | ||
| 348 | 70 | 866 | 62 | |||||||
| | (94.5) | (88.6) | 0.064 | 1.00 | (94.2) | (90.3) | 0.212 | 1.00 | ||
| | (5.5) | (11.4) | 2.23 | (0.94 - 5.33) | (5.8) | (9.7) | 1.75 | (0.72 - 4.25) | ||
| 217 | 80 | 770 | 68 | |||||||
| | (99.5) | (100.0) | 0.543 | 1.00 | (99.7) | (100.0) | 0.674 | 1.00 | ||
| | (0.5) | (0.0) | N/A | (0.3) | (0.0) | N/A | ||||
| 190 | 73 | 654 | 59 | |||||||
| | (81.6) | (80.8) | 0.888 | 1.00 | (82.6) | (78.0) | 0.376 | 1.00 | ||
| | (18.4) | (19.2) | 1.05 | (0.53 - 2.09) | (17.4) | (22.0) | 1.34 | (0.70 - 2.56) | ||
*P < 0.05.
†Bonferroni correction requires p < 0.01 to reach statistical significance
Major Haplotype Distribution in Case and Control Subjects by Race in stage 1†‡
| European Americans | Haplotype | Promoter SNP | Intron-1 SNP1 | Intron-1 SNP2 | Intron-2 SNP | Controls | Albuminuria Cases | P-value | ||
|---|---|---|---|---|---|---|---|---|---|---|
| C | A | C | C | C | C | (43.4) | (39.5) | 0.773 | ||
| A | A | C | T | A | C | (17.2) | (18.9) | |||
| A | C | A | C | C | A | (14.1) | (14.5) | |||
| C | A | C | T | A | C | (6.2) | (6.8) | |||
| * | * | * | * | * | * | (19.1) | (20.3) | |||
| C | A | C | C | C | C | (13.7) | (10.7) | 0.877 | ||
| A | A | C | T | A | C | (5.4) | (5.0) | |||
| A | C | A | C | C | A | (7.7) | (9.6) | |||
| C | C | C | C | C | C | (14.0) | (13.9) | |||
| C | C | C | C | A | C | (11.0) | (12.1) | |||
| A | C | C | C | A | C | (12.7) | (11.4) | |||
| A | C | A | C | C | C | (11.9) | (12.1) | |||
| A | A | C | C | A | C | (6.8) | (7.5) | |||
| * | * | * | * | * | * | (16.8) | (17.5) |
‡ Major haplotypes have a frequency ≥ 5%. Minor alleles are shaded in gray. Bonferroni corrected level of statistical significance for European Americans p < 0.0125 and for African Americans p < 0.00625.
† Among European Americans, the ten diplotypes associated with the major haplotypes A, B, C, and D from table 3, only the BD diplotype was associated with albuminuria (OR 3.03, 95% CI 1.36 - 6.79, p = 0.007, compared to individuals without the BD diplotype). However, this did not reach a Bonferroni corrected level of statistical significance of p < 0.005. The diplotypes consisting of the B or D "risk" haplotypes were rare, with BB, BD, and DD diplotypes accounting for 2.7%, 2.2%, and 0.5% of the 1663 European Americans with available diplotypes analyzed.
Adjusted relative odds of albuminuria, microalbuminuria, and macroalbuminuria for Enh 2 in all genotyped European Americans and African Americans, by type 2 diabetes status.
| | ||||||
| Model 1 | 2.11 (1.19 - 3.73) * | 0.010 | 2.01 (1.06 - 3.82) * | 0.034 | 2.69 (1.02 - 7.09) * | 0.045 |
| Model 2 | 2.14 (1.20 - 3.80) ** | 0.009 | 2.00 (1.05 - 3.81) * | 0.035 | 2.66 (0.98 - 7.26) | 0.056 |
| Model 2 + Fasting Glucose§ | 1.99 (1.07 - 3.68) * | 0.029 | 2.07 (1.06 - 4.06) * | 0.034 | 1.85 (0.58 - 5.91) | 0.299 |
| | ||||||
| Model 1 | 1.01 (0.65 - 1.55) | 0.980 | 0.91 (0.56 - 1.48) | 0.713 | 1.64 (0.64 - 4.25) | 0.305 |
| Model 2 | 1.03 (0.67 - 1.59) | 0.899 | 0.93 (0.57 - 1.50) | 0.764 | 1.77 (0.67 - 4.64) | 0.246 |
| Model 2 + Fasting Glucose§ | 1.05 (0.68 - 1.63) | 0.815 | 0.95 (0.59 - 1.54) | 0.843 | 1.78 (0.68 - 4.66) | 0.242 |
| | ||||||
| Model 1 | 3.09 (0.18 - 54.14) | 0.440 | 5.37 (0.32 - 90.91) | 0.244 | ||
| Model 2 | 4.36 (0.24 - 79.81) | 0.321 | 6.39 (0.37 - 110.75) | 0.203 | ||
| Model 2 + Fasting Glucose§ | 7.26 (0.38 - 137.93) | 0.187 | 8.12 (0.44 - 148.09) | 0.158 | ||
| | ||||||
| Model 1 | 3.29 (0.33 - 32.84) | 0.310 | 4.14 (0.41 - 41.44) | 0.227 | ||
| Model 2 | 4.69 (0.47 - 46.58) | 0.187 | 5.15 (0.51 - 51.66) | 0.164 | ||
| Model 2 + Fasting Glucose | 8.07 (0.70 - 93.63) | 0.095 | 8.60 (0.73 - 100.97) | 0.087 | ||
Statistical significance of point estimates: * P < .05 | ** P < .01 | *** P < .001
† Analyses with microalbuminuria as the outcome excluded macroalbuminuria cases. Analyses with macroalbuminuria as the outcome excluded microalbuminuria cases. Among African Americans, analyses with macroalbuminuria were omitted due to extremely low allele frequency.
Model 1 includes age, sex, systolic blood pressure, diastolic blood pressure and hypertension medication use.
Model 2 includes Model 1 covariates and BMI and estimated glomerular filtration rate.
§ Model 2 + Fasting Glucose is limited to individuals with fasting glucose values: non-diabetic European Americans N = 6,927 (340 albuminuria cases) and European Americans with type 2 diabetes N = 983 (166 albuminuria cases) and non-diabetic blacks N = 1,520 (126 albuminuria cases) and blacks with type 2 diabetes N = 415 (100 albuminuria cases).
Among European Americans, P-values estimating interaction between GLUT Enh2 and diabetes were not significant for the outcomes of albuminuria (P-interaction = 0.064), microalbuminuria (P-interaction = 0.071), and macroalbuminuria (P-interaction = 0.730). Among blacks, P-values estimating interaction between GLUT Enh2 and diabetes were not significant for the outcomes of albuminuria (P-interaction = 0.86), microalbuminuria (P-interaction = 0.96).
Unadjusted and multivariate linear regression of ln (ACR) and serum creatinine for Enh 2 in all genotyped European Americans, by type 2 diabetes status.
| Regression coefficient for | ||||
|---|---|---|---|---|
| | ||||
| Unadjusted | 0.26 (-0.17 - 0.69) | 0.240 | 0.06 (-0.00 - 0.13) | 0.069 |
| Model 1 | 0.27 (-0.14 - 0.68) | 0.196 | 0.02 (-0.04 - 0.09) | 0.446 |
| Model 2 | 0.28 (-0.13 - 0.68) | 0.185 | 0.02 (-0.04 - 0.09) | 0.446 |
| | ||||
| Unadjusted | -0.02 (-0.12 - 0.09) | 0.737 | -0.01 (-0.04 - 0.01) | 0.189 |
| Model 1 | -0.02 (-0.12 - 0.08) | 0.702 | -0.01 (-0.03 - 0.01) | 0.146 |
| Model 2 | -0.02 (-0.12 - 0.08) | 0.667 | -0.01 (-0.03 - 0.00) | 0.143 |
Model 1 includes age, sex, systolic blood pressure, diastolic blood pressure and hypertension medication use.
Model 2 includes Model 1 covariates and BMI and estimated glomerular filtration rate for the outcome ln (ACR). For the outcome of serum creatinine, model 2 includes Model 1 covariates and BMI.
Figure 2Macroalbuminuria, . *P < 0.05. Among non-diabetic European Americans with fasting insulin, the risk of macroalbuminuria associated with the GLUT1 Enh2 TT risk genotype was 1.84, 95% CI: 0.71 - 4.77, P = 0.210, adjusting for age, gender, hypertension status, BMI, and GFR. For individuals in the upper quartile of insulin concentrations, the Enh2 TT genotype was associated with macroalbuminuria (OR 4.08, 95% CI: 1.06 - 15.61, p = 0.040) while it was not associated among those in the lower three quartiles (OR 1.00, 95% CI: 0.23 - 4.28, P = 0.995). There was no significant interaction between high concentrations of insulin and Enh2 TT genotypes on macroalbuminuria risk (P-interaction = 0.163).