Literature DB >> 21243036

Epigenetics: Tools and Technologies.

William P Janzen1, Tim J Wigle, Jian Jin, Stephen V Frye.   

Abstract

Epigenetics refers to heritable changes that control how the genome is accessed in different cell-types and during development and differentiation. Even though each cell contains essentially the same genetic code, epigenetic mechanisms permit specialization of function between cells. The state of chromatin, the complex of histone proteins, RNA and DNA that efficiently package the genome, is largely regulated by specific modifications to histone proteins and DNA, and the recognition of these marks by other proteins and protein complexes. The enzymes that produce these modifications (the 'writers'), the proteins that recognize them (the 'readers'), and the enzymes that remove them (the 'erasers') are critical targets for manipulation in order to further understand the histone code and its role in biology and human disease.

Entities:  

Year:  2010        PMID: 21243036      PMCID: PMC3018755          DOI: 10.1016/j.ddtec.2010.07.004

Source DB:  PubMed          Journal:  Drug Discov Today Technol        ISSN: 1740-6749


  76 in total

Review 1.  Reading protein modifications with interaction domains.

Authors:  Bruce T Seet; Ivan Dikic; Ming-Ming Zhou; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

2.  Screening for inhibitors of low-affinity epigenetic peptide-protein interactions: an AlphaScreen-based assay for antagonists of methyl-lysine binding proteins.

Authors:  Tim J Wigle; J Martin Herold; Guillermo A Senisterra; Masoud Vedadi; Dmitri B Kireev; Cheryl H Arrowsmith; Stephen V Frye; William P Janzen
Journal:  J Biomol Screen       Date:  2009-12-11

Review 3.  Dimethyl sulfoxide to vorinostat: development of this histone deacetylase inhibitor as an anticancer drug.

Authors:  Paul A Marks; Ronald Breslow
Journal:  Nat Biotechnol       Date:  2007-01       Impact factor: 54.908

4.  Accessing protein methyltransferase and demethylase enzymology using microfluidic capillary electrophoresis.

Authors:  Tim J Wigle; Laurel M Provencher; Jacqueline L Norris; Jian Jin; Peter J Brown; Stephen V Frye; William P Janzen
Journal:  Chem Biol       Date:  2010-07-30

5.  Mechanism of human SIRT1 activation by resveratrol.

Authors:  Margie T Borra; Brian C Smith; John M Denu
Journal:  J Biol Chem       Date:  2005-03-04       Impact factor: 5.157

6.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

7.  Combinatorial profiling of chromatin binding modules reveals multisite discrimination.

Authors:  Adam L Garske; Samuel S Oliver; Elise K Wagner; Catherine A Musselman; Gary LeRoy; Benjamin A Garcia; Tatiana G Kutateladze; John M Denu
Journal:  Nat Chem Biol       Date:  2010-02-28       Impact factor: 15.040

8.  An enzyme-coupled colorimetric assay for S-adenosylmethionine-dependent methyltransferases.

Authors:  Cheryl L Hendricks; Jeannine R Ross; Eran Pichersky; Joseph P Noel; Zhaohui Sunny Zhou
Journal:  Anal Biochem       Date:  2004-03-01       Impact factor: 3.365

Review 9.  Histone deacetylases.

Authors:  Paul A Marks; Thomas Miller; Victoria M Richon
Journal:  Curr Opin Pharmacol       Date:  2003-08       Impact factor: 5.547

10.  Structural basis for G9a-like protein lysine methyltransferase inhibition by BIX-01294.

Authors:  Yanqi Chang; Xing Zhang; John R Horton; Anup K Upadhyay; Astrid Spannhoff; Jin Liu; James P Snyder; Mark T Bedford; Xiaodong Cheng
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

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  11 in total

1.  Development and validation of a generic fluorescent methyltransferase activity assay based on the transcreener AMP/GMP assay.

Authors:  Tony A Klink; Matt Staeben; Kim Twesten; Andrew L Kopp; Meera Kumar; Rebecca Schall Dunn; Cori A Pinchard; Karen M Kleman-Leyer; Martin Klumpp; Robert G Lowery
Journal:  J Biomol Screen       Date:  2011-09-28

Review 2.  Epigenetics and autism spectrum disorder: A report of an autism case with mutation in H1 linker histone HIST1H1E and literature review.

Authors:  Lara J Duffney; Purnima Valdez; Martine W Tremblay; Xinyu Cao; Sarah Montgomery; Allyn McConkie-Rosell; Yong-Hui Jiang
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2018-04-27       Impact factor: 3.568

Review 3.  Biological function and histone recognition of family IV bromodomain-containing proteins.

Authors:  Jonathan T Lloyd; Karen C Glass
Journal:  J Cell Physiol       Date:  2017-06-13       Impact factor: 6.384

4.  LSD1/CoREST is an allosteric nanoscale clamp regulated by H3-histone-tail molecular recognition.

Authors:  Riccardo Baron; Nadeem A Vellore
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

5.  A TR-FRET-based functional assay for screening activators of CARM1.

Authors:  Hao Zeng; Jiacai Wu; Mark T Bedford; Gianluca Sbardella; F Michael Hoffmann; Kun Bi; Wei Xu
Journal:  Chembiochem       Date:  2013-04-12       Impact factor: 3.164

Review 6.  Kabuki syndrome: review of the clinical features, diagnosis and epigenetic mechanisms.

Authors:  Yi-Rou Wang; Nai-Xin Xu; Jian Wang; Xiu-Min Wang
Journal:  World J Pediatr       Date:  2019-10-05       Impact factor: 2.764

Review 7.  Mechanistic homeostasis of vitamin D metabolism in the kidney through reciprocal modulation of Cyp27b1 and Cyp24a1 expression.

Authors:  Mark B Meyer; J Wesley Pike
Journal:  J Steroid Biochem Mol Biol       Date:  2019-10-16       Impact factor: 4.292

Review 8.  Computer-aided Molecular Design of Compounds Targeting Histone Modifying Enzymes.

Authors:  Federico Andreoli; Alberto Del Rio
Journal:  Comput Struct Biotechnol J       Date:  2015-05-07       Impact factor: 7.271

Review 9.  Ubiquitin Regulation: The Histone Modifying Enzyme's Story.

Authors:  Jianlin Wang; Zhaoping Qiu; Yadi Wu
Journal:  Cells       Date:  2018-08-27       Impact factor: 6.600

10.  Global Chromatin Changes Resulting from Single-Gene Inactivation-The Role of SMARCB1 in Malignant Rhabdoid Tumor.

Authors:  Colin Kenny; Elaine O'Meara; Mevlüt Ulaş; Karsten Hokamp; Maureen J O'Sullivan
Journal:  Cancers (Basel)       Date:  2021-05-23       Impact factor: 6.639

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