| Literature DB >> 21234329 |
Chia-Chao Wu1, Jin-Shuen Chen, Ching-Feng Huang, Chun-Chi Chen, Kuo-Chen Lu, Pauling Chu, Huey-Kang Sytwu, Yuh-Feng Lin.
Abstract
BACKGROUND: Membranous glomerulonephropathy (MN) is the most prevalent cause of nephrotic syndrome in adult humans. However, the specific biomarkers of MN have not been fully elucidated. We examined the alterations in gene expression associated with the development of MN.Entities:
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Year: 2010 PMID: 21234329 PMCID: PMC3018661 DOI: 10.1155/2011/581928
Source DB: PubMed Journal: J Biomed Biotechnol ISSN: 1110-7243
The 175 genes with significantly different expressions in the MN kidneys compared with the normal kidneys.
| Increased expression | |
|---|---|
| Adamts1: a disintegrin and metalloproteinase with thrombospondin motif type 1 | Ly6a: lymphocyte antigen 6 complex, locus A |
| Akr1b3: aldo-keto reductase family 1, B3 | Ly6e: lymphocyte antigen 6 complex,, locus E |
| Aldo: aldolase 1, A isoform | Lyzs: lysozyme |
| Anxa2: annexin A2 | Macs: myristoylated alanine rich protein |
| Anxa5: annexin A5 | Mglap: matrix gamma-carboxyglutamate (gla) protein |
| Arbp: acidic ribosomal phosphoprotein | Morc3: MORC family CW-type zinc finger 3 |
| Arpclb: actin-related protein | Mpz: myelin protein zero |
| Axl: AXL receptor tyrosine kinase | Mrgpre: MAS-related GPR, member E |
| Bgn: biglycan | Mrp63: mitochondrial ribosomal protein 63 |
| C1ga: complement component C1ga | Mrps6: mitochondrial ribosomal protein S6 |
| C1gc: complement component C1gc | Mt1: metallothionein 1 |
| C3: complement component 3 | Mt2: metallothionein 2 |
| Calbl: calbindin-28K | Muc1: mucin 1, cell surface associated |
| Cap 1: adenylyl cyclase-associated protein 1 | Muc1: mucin 1, transmembrane |
| Capg: capping protein (actin filament) | Nes: nestin |
| Cd24a: CD24a antigen | Nfkbia: nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha |
| Cd9: CD9 antigen | Nid1: nidogen 1 |
| Cldn7: claudin 7 | Npnt: nephronectin |
| Clic1: chloride intracellular channel | Pcolce: procollagen C-proteinase enhancer |
| Clu: clusterin | Pctp1: phosphatidylcholine transfer protein |
| Cmkbr2: chemokine (C-C) receptor 2 | Plat: plasminogen activator, tissue |
| Col 3a1: procollagen, type III, alpha 1 | Prdx6: peroxiredoxin 6 |
| Col4a1: procollagen, type IV, alpha 1 | Prkab1: protein kinase, AMP-activated, beta 1 noncatalytic subunit |
| Col4a2: procollagen, type IV, alpha 2 | Ptma: prothymosin alpha |
| Colla2: procollagen, type I, alpha 2 | Rab31: member RAS oncogene family |
| Collal: procollagen, type I, alpha 1 | Raph1: Ras association and pleckstrin homology domains 1 |
| Cox7a3: cytochrome c oxidase, subunit 7a3 | Rbm3: RNA binding motif protein 3 |
| Csnkld: casein kinase 1 delta | Rbm5: RNA binding motif protein 5 |
| Csrp: cysteine rich protein | Rhoc: ras homolog gene family, member C |
| Cst3: cystatin C | Rpia: ribose 5-phosphate isomerase A |
| Ctsc: cathepsin C | Rpl12: ribosomal protein L12 |
| Ctsd: cathepsin D | Rpl29: ribosomal protein L29 |
| Dbh: dopamine beta-hydroxylase | Rpl3: ribosomal protein L3 |
| Dgcr: DiGeorge syndrome critical region | Rpl31: ribosomal protein L31 |
| Dgk1: diacylglycerol kinase 1 | Rpl36: ribosomal protein L36 |
| Dok7: docking protein 7 | Rpl37a: ribosomal protein L37a |
| Dppa2: developmental pluripotency associated 2 | Rpl41: ribosomal protein L41 |
| Dtx1: deltex homolog 1 (Drosophila) | Rpl5: ribosomal protein L5 |
| Eef1a1: eukaryotic translation elongation factor 1 alpha 1 | Rpl7: ribosomal protein L7 |
| Eif3d: eukaryotic translation initiation factor 3, subunit D | Rplp1: ribosomal protein, large, P1 |
| Elk1: member of ETS oncogene family | Rps15: ribosomal protein S15 |
| Eras: ES cell expressed Ras | Rps15: ribosomal protein S15 |
| F2r: coagulation factor II (thrombin) | Rps16: ribosomal protein S16 |
| F9: coagulation factor IX | Rps20: ribosomal protein S20 |
| Fau: Finkel-Biskis-Reilly murine sarcoma | Rps3a: ribosomal protein S3a |
| Fcerlg: Fc receptor, IgE high affinity | Rps4x: ribosomal protein S4, X-linked |
| Fkbp5: FK506 binding protein 5 | Rps6: ribosomal protein S6 |
| Fn1: fibronectin 1 | Rrm2: ribonucleotide reductase M2 |
| Fn14: fibroblast growth factor-inducible 14 | Rsbn1: round spermatid basic protein 1 |
| Fstl: follistatin-like protein | Rundc3a: RUN domain containing 3A |
| Ft11: ferritin light chain 1 | S100a6: S100 calcium binding protein A |
| Gnb211: guanine nucleotide binding protein | Sam68: Src-associated in mitosis, 68kDa |
| Gpr56: G protein-coupled receptor 56 | Sdc4: syndecan 4 |
| H2-Ebl: histocompatibility 2, class 1E beta | Serpinb6: serpin peptidase inhibitor, B6 |
| Hcfc1: host cell factor C1 | Serping1: serpin peptidase inhibitor, G1 |
| Hdc-c: histidine decarboxylase | Serpinh1: serpin peptidase inhibitor, H1 |
| Hmga1: high mobility group A1 | Sh3bgrl3: SH3 domain binding glutamic acid-rich protein like 3 |
| Hmgb2: high mobility group box 2 | Sparc: secreted protein acidic and rich in cysteine |
| Hmgn2: high mobility group nucleosomal binding domain 2 | Spp1: secreted phosphoprotein 1 |
| Hn1: hematological and neurological expressed protein 1 | Star: steroidogenic acute regulatory protein |
| Hnrp1: heterogeneous nuclear ribonucleoprotein A1 | Syn1: synapsin 1 |
| Hsp25: heat shock protein, 25 kDa | Tbst1: protein-tyrosine sulfotransferase 1 |
| Hsp84-1: heat shock protein, 84 kDa 1 | Tgfb1i4: transforming growth factor beta 1 induced transcript 4 |
| Idb2: inhibitor of DNA binding 2 | Tip39: tuftelin-interacting protein 33 |
| Klhl2: kelch-like 2, Mayven (Drosophila) | Tmsb10: thymosin, beta 10 |
| Krt2-8: keratin complex 2, basic, gene 8 | Tmsb4x: thymosin, beta 4, X chromosome |
| Lamr1: laminin receptor 1 | Tpi: triose phosphate isomerase |
| Laptm5: lysosomal associated protein multispanning transmembrane 5 | Tspan2: tetraspanin 2 |
| Lcn2: lipocalin 2 | Tuba2: tubulin, alpha 2 |
| Lcn7: lipocalin 7 | Tubb5: tubulin, beta 5 |
| Ldh1: lactate dehydroaenase 1 | Ubc: ubiquitin C |
| Lgals3: lectin, galactoside-binding, soluble, 3 | Uchrb: Ubiquitin c-terminal hydrolase |
| Litaf: LPS-induced TNF-alpha factor | Ucp2: uncoupling protein 2 |
| Lrat: lecithin retinol acyltransferase | Wisp2: WNT1 inducible signaling pathway protein 2 |
| Lu: Lutheran blood group glycoprotein | |
| Decreased expression | |
| Ak4: adenylate kinase 4 | Lrp2: low density lipoprotein receptor-related protein 2 |
| Bhmt2: betaine-homocysteine methyltransferase 2 | Mad1l1: mitotic arrest deficient-like 1 |
| Bid: BH3 interacting domain death agonist | Map4: microtubule-associated protein 4 |
| Ccnc: cyclin C | Med28: mediator complex subunit 28 |
| Cdc2a: cell division cycle 2 homolog A | Megf10: multiple EGF-like-domains 10 |
| Degs2: degenerative spermatocyte homolog 2 | Narg1: NMDA receptor regulated 1 |
| Emp3: epithelial membrane protein 3 | Prlr: prolactin receptor |
| Ensa: endosulfine alpha | Rac GAP: Rac GTPase activating protein 1 |
| Epha2: Eph receptor A2 | Rhd: Rh blood group, D antigen |
| Evi5: ecotropic viral integration site 5 | Rhov: ras homolog gene family, member V |
| Fignl1: fidgetin-like 1 | Slc15a2: solute carrier family 15, member 2 |
| Hmgcs2: 3-hydroxy-3-methylglutaryl CoA synthase 2 | Ttr: Transthyretin |
| Hsd3b: 3-hydroxysteroid dehydrogenase type 2 | Xnp: X-linked nuclear protein |
Figure 1Clinical manifestations in mice with MN. The biochemical findings in MN mice revealed normal renal function (a), hypoalbuminemia (b), hypercholesterolemia (c), and overt proteinuria (d). *P < .05.
Figure 2Renal histopathology in mice with MN. Histopathology revealed findings characteristic of diffuse basement membrane thickening, as observed in the (a) hematoxylin and eosin staining, (b) positive granular immunofluorescent staining for IgG, (c) positive granular immunofluorescent staining for C3, and (d) subepithelial deposition (asterisk). NC: normal control; MN: membranous nephropathy; G: glomerular basement membrane; L: lumen of capillary; U: urinary space.
Figure 3Dendrogram of microarray results from MN kidneys which revealed 175 genes with significantly different expressions compared with normal kidneys.
PCR gene sequences in four candidate genes and housekeeping genes.
| Name | Forward | Reverse | Product (bp) |
|---|---|---|---|
| Ly6e | 5′agtcttcctgcctgtgctgttg3′ | 5′cgccacaccgagattgagattg3′ | 253 |
| Lamr-1 | 5′ctcttatgtcaacctgcccacc3′ | 5′tgctcctccttctcaatctcctc3′ | 221 |
| CtsD | 5′agctgtcctacctgaacgtcac3′ | 5′tgtctttccaccctgcgatacc3′ | 287 |
| Mt-1 | 5′tcaacgtcctgagtaccttctcc3′ | 5′tgaagacctctgcttcctgtcc3′ | 397 |
| GAPDH | 5′tccgccccttctgccgatc3′ | 5′cacggaaggccatgccagtga3′ | 354 |
Ly6e: lymphocyte antigen 6 complex, Lamr-1: laminin receptor-1 (67kDa), CtsD: cathepsin D, Mt-1: metallothionein-1, GAPDH: housekeeping gene, bp: base pair.
Figure 4Candidate genes mRNA expression levels. Four candidate genes RNA were prepared from the kidney cortices of NC and MN mice, and the levels of mRNA expression were determined by RT-PCR (n = 3). *P < .05.
Figure 5Confirmation of candidate protein expressions based on the microarray results by Western blot of kidney protein extraction. NC: normal control; MN: membranous nephropathy; Mt-1: metallothionein-1; CtsD: cathepsin D; Lamr-1: laminin receptor-1; Ly6e: lymphocyte antigen 6 complex (n = 3). *P < .05.
Figure 6Renal immunohistochemistry of candidate proteins in mice kidneys. Kidneys from mice of the normal control group ((a), (c), and (e)) and membranous nephropathy group ((b), (d), and (f)) were stained for CtsD ((a) and (b)), Lamr-1 ((c) and (d)), and Mt-1 ((e) and (f)). All images are at 400× magnification. CtsD: cathepsin D; Lamr-1: laminin receptor-1; Mt-1: metallothionein-1.
Figure 7Renal immunohistochemistry of candidate proteins in human kidneys. Kidneys from humans of the normal control group (a and c) and membranous nephropathy group (b and d) were stained for CtsD (a and b) and Lamr-1 (c and d). All images are at 400x magnification. CtsD: cathepsin D; Lamr-1: laminin receptor-1.