Literature DB >> 21230647

Time, temperature, and data cloud geometry.

Hsieh Fushing1, Michael P McAssey.   

Abstract

We demonstrate that the geometry of a data cloud is computable on multiple scales without prior knowledge about its structure. We show that the concepts of "time" and "temperature" are beneficial for constructing a hierarchical geometry based on local information provided by a similarity measure. We design two devices for construction of this hierarchy. Along the time axis, a regulated random walk incorporated with recurrence-time dynamics detects information about the number of clusters and the corresponding cluster membership of individual data nodes. Along the temperature axis we build the geometric hierarchy of a data cloud, which consists of only a few phase transitions. The base level of the hierarchy especially exhibits the intrinsic data structure. At each chosen temperature, we form an ensemble matrix that summarizes information extracted from many regulated random walks. This device constitutes the basis for constructing one corresponding level of the hierarchy by means of spectral clustering. We illustrate the construction of such geometric hierarchies using simulated and real data.

Mesh:

Year:  2010        PMID: 21230647     DOI: 10.1103/PhysRevE.82.061110

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  15 in total

1.  Unravelling the geometry of data matrices: effects of water stress regimes on winemaking.

Authors:  Hsieh Fushing; Chih-Hsin Hsueh; Constantin Heitkamp; Mark A Matthews; Patrice Koehl
Journal:  J R Soc Interface       Date:  2015-10-06       Impact factor: 4.118

Review 2.  Acoustic sequences in non-human animals: a tutorial review and prospectus.

Authors:  Arik Kershenbaum; Daniel T Blumstein; Marie A Roch; Çağlar Akçay; Gregory Backus; Mark A Bee; Kirsten Bohn; Yan Cao; Gerald Carter; Cristiane Cäsar; Michael Coen; Stacy L DeRuiter; Laurance Doyle; Shimon Edelman; Ramon Ferrer-i-Cancho; Todd M Freeberg; Ellen C Garland; Morgan Gustison; Heidi E Harley; Chloé Huetz; Melissa Hughes; Julia Hyland Bruno; Amiyaal Ilany; Dezhe Z Jin; Michael Johnson; Chenghui Ju; Jeremy Karnowski; Bernard Lohr; Marta B Manser; Brenda McCowan; Eduardo Mercado; Peter M Narins; Alex Piel; Megan Rice; Roberta Salmi; Kazutoshi Sasahara; Laela Sayigh; Yu Shiu; Charles Taylor; Edgar E Vallejo; Sara Waller; Veronica Zamora-Gutierrez
Journal:  Biol Rev Camb Philos Soc       Date:  2014-11-26

3.  Bootstrapping on undirected binary networks via statistical mechanics.

Authors:  Hsieh Fushing; Chen Chen; Shan-Yu Liu; Patrice Koehl
Journal:  J Stat Phys       Date:  2014-09-01       Impact factor: 1.548

4.  Identification of Longitudinal Sensory Subtypes in Typical Development and Autism Spectrum Development Using Growth Mixture Modelling.

Authors:  Patrick Dwyer; Clifford D Saron; Susan M Rivera
Journal:  Res Autism Spectr Disord       Date:  2020-08-27

5.  Extracting multiscale pattern information of fMRI based functional brain connectivity with application on classification of autism spectrum disorders.

Authors:  Hui Wang; Chen Chen; Hsieh Fushing
Journal:  PLoS One       Date:  2012-10-08       Impact factor: 3.240

6.  Lewis Carroll's Doublets net of English words: network heterogeneity in a complex system.

Authors:  Hsieh Fushing; Chen Chen; Yin-Chen Hsieh; Patrick Farrell
Journal:  PLoS One       Date:  2014-12-17       Impact factor: 3.240

7.  biDCG: a new method for discovering global features of DNA microarray data via an iterative re-clustering procedure.

Authors:  Chia-Pei Chen; Hsieh Fushing; Rob Atwill; Patrice Koehl
Journal:  PLoS One       Date:  2014-07-21       Impact factor: 3.240

8.  Multi-scale clustering by building a robust and self correcting ultrametric topology on data points.

Authors:  Hsieh Fushing; Hui Wang; Kimberly Vanderwaal; Brenda McCowan; Patrice Koehl
Journal:  PLoS One       Date:  2013-02-12       Impact factor: 3.240

9.  Connections Matter: Social Networks and Lifespan Health in Primate Translational Models.

Authors:  Brenda McCowan; Brianne Beisner; Eliza Bliss-Moreau; Jessica Vandeleest; Jian Jin; Darcy Hannibal; Fushing Hsieh
Journal:  Front Psychol       Date:  2016-04-22

10.  Integrative Inferences on Pattern Geometries of Grapes Grown under Water Stress and Their Resulting Wines.

Authors:  Fushing Hsieh; Chih-Hsin Hsueh; Constantin Heitkamp; Mark Matthews
Journal:  PLoS One       Date:  2016-08-10       Impact factor: 3.240

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