Literature DB >> 21230516

Comparison of Brownian-dynamics-based estimates of polymer tension with direct force measurements.

Mark E Arsenault1, Prashant K Purohit, Yale E Goldman, Henry Shuman, Haim H Bau.   

Abstract

With the aid of brownian dynamics models, it is possible to estimate polymer tension by monitoring polymers' transverse thermal fluctuations. To assess the precision of the approach, brownian dynamics-based tension estimates were compared with the force applied to rhodamine-phalloidin labeled actin filaments bound to polymer beads and suspended between two optical traps. The transverse thermal fluctuations of each filament were monitored with a CCD camera, and the images were analyzed to obtain the filament's transverse displacement variance as a function of position along the filament, the filament's tension, and the camera's exposure time. A linear Brownian dynamics model was used to estimate the filament's tension. The estimated force was compared and agreed within 30% (when the tension <0.1 pN ) and 70% (when the tension <1 pN ) with the applied trap force. In addition, the paper presents concise asymptotic expressions for the mechanical compliance of a system consisting of a filament attached tangentially to bead handles (dumbbell system). The techniques described here can be used for noncontact estimates of polymers' and fibers' tension.

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Year:  2010        PMID: 21230516      PMCID: PMC3639157          DOI: 10.1103/PhysRevE.82.051923

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  20 in total

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Authors:  Steven B Smith; Yujia Cui; Carlos Bustamante
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

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Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

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Authors:  Yasuharu Takagi; Earl E Homsher; Yale E Goldman; Henry Shuman
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

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Journal:  Rev Sci Instrum       Date:  2004-09       Impact factor: 1.523

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Authors:  A D Mehta; J T Finer; J A Spudich
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

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Authors:  A Ashkin; J M Dziedzic; J E Bjorkholm; S Chu
Journal:  Opt Lett       Date:  1986-05-01       Impact factor: 3.776

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Direct observation of motion of single F-actin filaments in the presence of myosin.

Authors:  T Yanagida; M Nakase; K Nishiyama; F Oosawa
Journal:  Nature       Date:  1984 Jan 5-11       Impact factor: 49.962

9.  The stiffness of rabbit skeletal actomyosin cross-bridges determined with an optical tweezers transducer.

Authors:  C Veigel; M L Bartoo; D C White; J C Sparrow; J E Molloy
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

10.  Using electrical and optical tweezers to facilitate studies of molecular motors.

Authors:  Mark E Arsenault; Yujie Sun; Haim H Bau; Yale E Goldman
Journal:  Phys Chem Chem Phys       Date:  2009-04-16       Impact factor: 3.676

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