Literature DB >> 21230311

Correcting mean-field approximations for birth-death-movement processes.

Ruth E Baker1, Matthew J Simpson.   

Abstract

On the microscale, migration, proliferation and death are crucial in the development, homeostasis and repair of an organism; on the macroscale, such effects are important in the sustainability of a population in its environment. Dependent on the relative rates of migration, proliferation and death, spatial heterogeneity may arise within an initially uniform field; this leads to the formation of spatial correlations and can have a negative impact upon population growth. Usually, such effects are neglected in modeling studies and simple phenomenological descriptions, such as the logistic model, are used to model population growth. In this work we outline some methods for analyzing exclusion processes which include agent proliferation, death and motility in two and three spatial dimensions with spatially homogeneous initial conditions. The mean-field description for these types of processes is of logistic form; we show that, under certain parameter conditions, such systems may display large deviations from the mean field, and suggest computationally tractable methods to correct the logistic-type description.

Entities:  

Mesh:

Year:  2010        PMID: 21230311     DOI: 10.1103/PhysRevE.82.041905

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  19 in total

1.  Models of collective cell behaviour with crowding effects: comparing lattice-based and lattice-free approaches.

Authors:  Michael J Plank; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2012-06-13       Impact factor: 4.118

2.  The importance of volume exclusion in modelling cellular migration.

Authors:  Louise Dyson; Ruth E Baker
Journal:  J Math Biol       Date:  2014-09-28       Impact factor: 2.259

3.  Predicting population extinction in lattice-based birth-death-movement models.

Authors:  Stuart T Johnston; Matthew J Simpson; Edmund J Crampin
Journal:  Proc Math Phys Eng Sci       Date:  2020-06-03       Impact factor: 2.704

Review 4.  Multi-scale modeling in biology: how to bridge the gaps between scales?

Authors:  Zhilin Qu; Alan Garfinkel; James N Weiss; Melissa Nivala
Journal:  Prog Biophys Mol Biol       Date:  2011-06-23       Impact factor: 3.667

5.  Accurate and efficient discretizations for stochastic models providing near agent-based spatial resolution at low computational cost.

Authors:  Nabil T Fadai; Ruth E Baker; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2019-10-23       Impact factor: 4.118

6.  Exact Equations for SIR Epidemics on Tree Graphs.

Authors:  K J Sharkey; I Z Kiss; R R Wilkinson; P L Simon
Journal:  Bull Math Biol       Date:  2013-12-18       Impact factor: 1.758

7.  Synchronized oscillations in growing cell populations are explained by demographic noise.

Authors:  Enrico Gavagnin; Sean T Vittadello; Gency Gunasingh; Nikolas K Haass; Matthew J Simpson; Tim Rogers; Christian A Yates
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

8.  Assessing the role of spatial correlations during collective cell spreading.

Authors:  Katrina K Treloar; Matthew J Simpson; Benjamin J Binder; D L Sean McElwain; Ruth E Baker
Journal:  Sci Rep       Date:  2014-07-16       Impact factor: 4.379

9.  Learning differential equation models from stochastic agent-based model simulations.

Authors:  John T Nardini; Ruth E Baker; Matthew J Simpson; Kevin B Flores
Journal:  J R Soc Interface       Date:  2021-03-17       Impact factor: 4.118

10.  Do pioneer cells exist?

Authors:  Matthew J Simpson; Parvathi Haridas; D L Sean McElwain
Journal:  PLoS One       Date:  2014-01-21       Impact factor: 3.240

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