Literature DB >> 21224223

'Systems biology' in human exercise physiology: is it something different from integrative physiology?

Paul L Greenhaff1, Mark Hargreaves.   

Abstract

On first impression the 'whole-istic approach to understanding biology' that has been used to describe Systems Biology bears a striking resemblance to what many of us know as Integrative Physiology. However, closer scrutiny reveals that at the present time Systems Biology is rooted in processes operating at a cellular level ('the study of an organism, viewed as an integrated and interacting network of genes, proteins and biochemical reactions which give rise to life ultimately responsible for an organism's form and functions'; http://www.systemsbiology.org), and appears to have evolved as a direct result of advances in high throughput molecular biology platforms (and associated bioinformatics) over the past decade. The Systems Biology approach is in many ways laudable, but it will be immediately apparent to most exercise or integrative physiologists that the challenge of understanding the whole-animal response to exercise as a network of integrated and interacting genes, proteins and biochemical reactions is unlikely to be realized in the near future. This short review will attempt to clarify conceptual inconsistencies between the fields of Systems Biology and Integrative Physiology in the context of exercise science, and will attempt to identify the challenges to whole-body physiologists wishing to harness the tools of Systems Biology.

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Year:  2011        PMID: 21224223      PMCID: PMC3060583          DOI: 10.1113/jphysiol.2010.201525

Source DB:  PubMed          Journal:  J Physiol        ISSN: 0022-3751            Impact factor:   5.182


  26 in total

Review 1.  Individual differences in response to regular physical activity.

Authors:  C Bouchard; T Rankinen
Journal:  Med Sci Sports Exerc       Date:  2001-06       Impact factor: 5.411

Review 2.  Systems biology: an approach.

Authors:  P Kohl; E J Crampin; T A Quinn; D Noble
Journal:  Clin Pharmacol Ther       Date:  2010-06-09       Impact factor: 6.875

3.  Metabolic signatures of exercise in human plasma.

Authors:  Gregory D Lewis; Laurie Farrell; Malissa J Wood; Maryann Martinovic; Zoltan Arany; Glenn C Rowe; Amanda Souza; Susan Cheng; Elizabeth L McCabe; Elaine Yang; Xu Shi; Rahul Deo; Frederick P Roth; Aarti Asnani; Eugene P Rhee; David M Systrom; Marc J Semigran; Ramachandran S Vasan; Steven A Carr; Thomas J Wang; Marc S Sabatine; Clary B Clish; Robert E Gerszten
Journal:  Sci Transl Med       Date:  2010-05-26       Impact factor: 17.956

4.  Global gene expression in skeletal muscle from well-trained strength and endurance athletes.

Authors:  Nigel K Stepto; Vernon G Coffey; Andrew L Carey; Anna P Ponnampalam; Benedict J Canny; David Powell; John A Hawley
Journal:  Med Sci Sports Exerc       Date:  2009-03       Impact factor: 5.411

5.  Using molecular classification to predict gains in maximal aerobic capacity following endurance exercise training in humans.

Authors:  James A Timmons; Steen Knudsen; Tuomo Rankinen; Lauren G Koch; Mark Sarzynski; Thomas Jensen; Pernille Keller; Camilla Scheele; Niels B J Vollaard; Søren Nielsen; Thorbjörn Akerström; Ormond A MacDougald; Eva Jansson; Paul L Greenhaff; Mark A Tarnopolsky; Luc J C van Loon; Bente K Pedersen; Carl Johan Sundberg; Claes Wahlestedt; Steven L Britton; Claude Bouchard
Journal:  J Appl Physiol (1985)       Date:  2010-02-04

6.  Effect of sepsis on eIE4E availability in skeletal muscle.

Authors:  T C Vary; S R Kimball
Journal:  Am J Physiol Endocrinol Metab       Date:  2000-11       Impact factor: 4.310

7.  A transcriptional map of the impact of endurance exercise training on skeletal muscle phenotype.

Authors:  Pernille Keller; Niels B J Vollaard; Thomas Gustafsson; Iain J Gallagher; Carl Johan Sundberg; Tuomo Rankinen; Steven L Britton; Claude Bouchard; Lauren G Koch; James A Timmons
Journal:  J Appl Physiol (1985)       Date:  2010-10-07

Review 8.  Human genetic variation and its contribution to complex traits.

Authors:  Kelly A Frazer; Sarah S Murray; Nicholas J Schork; Eric J Topol
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

9.  Molecular responses of human muscle to eccentric exercise.

Authors:  Yi-Wen Chen; Monica J Hubal; Eric P Hoffman; Paul D Thompson; Priscilla M Clarkson
Journal:  J Appl Physiol (1985)       Date:  2003-08-22

10.  Opioid-mediated muscle afferents inhibit central motor drive and limit peripheral muscle fatigue development in humans.

Authors:  Markus Amann; Lester T Proctor; Joshua J Sebranek; David F Pegelow; Jerome A Dempsey
Journal:  J Physiol       Date:  2008-11-17       Impact factor: 5.182

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  12 in total

Review 1.  Giant sucking sound: can physiology fill the intellectual void left by the reductionists?

Authors:  Michael J Joyner
Journal:  J Appl Physiol (1985)       Date:  2011-06-02

2.  Physiology: alone at the bottom, alone at the top.

Authors:  Michael J Joyner
Journal:  J Physiol       Date:  2011-03-01       Impact factor: 5.182

3.  "A Changing of the Guard" revisited.

Authors:  Susan A Ward
Journal:  Eur J Appl Physiol       Date:  2013-03-08       Impact factor: 3.078

Review 4.  Exercise-dependent regulation of the tumour microenvironment.

Authors:  Graeme J Koelwyn; Daniela F Quail; Xiang Zhang; Richard M White; Lee W Jones
Journal:  Nat Rev Cancer       Date:  2017-09-25       Impact factor: 60.716

Review 5.  Lack of exercise is a major cause of chronic diseases.

Authors:  Frank W Booth; Christian K Roberts; Matthew J Laye
Journal:  Compr Physiol       Date:  2012-04       Impact factor: 9.090

6.  The Proteome of a Healthy Human during Physical Activity under Extreme Conditions.

Authors:  I M Larina; V A Ivanisenko; E N Nikolaev; A I Grigorev
Journal:  Acta Naturae       Date:  2014-07       Impact factor: 1.845

7.  Applying systems biology methods to the study of human physiology in extreme environments.

Authors:  Lindsay M Edwards; Ines Thiele
Journal:  Extrem Physiol Med       Date:  2013-03-22

8.  Integrative physiology and systems biology: reductionism, emergence and causality.

Authors:  Michael P W Grocott
Journal:  Extrem Physiol Med       Date:  2013-03-22

9.  Whole blood transcriptomics and urinary metabolomics to define adaptive biochemical pathways of high-intensity exercise in 50-60 year old masters athletes.

Authors:  Kamalika Mukherjee; Brittany A Edgett; Harrison W Burrows; Cecilia Castro; Julian L Griffin; Adel Giaid Schwertani; Brendon J Gurd; Colin D Funk
Journal:  PLoS One       Date:  2014-03-18       Impact factor: 3.240

Review 10.  Beyond obesity and lifestyle: a review of 21st century chronic disease determinants.

Authors:  Garry Egger; John Dixon
Journal:  Biomed Res Int       Date:  2014-04-07       Impact factor: 3.411

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