Literature DB >> 21221126

Genome-wide association study of serious blistering skin rash caused by drugs.

Y Shen1, P Nicoletti, A Floratos, M Pirmohamed, M Molokhia, P Geppetti, S Benemei, B Giomi, D Schena, A Vultaggio, R Stern, M J Daly, S John, M R Nelson, I Pe'er.   

Abstract

Stevens-Johnson syndrome (SJS) and toxic epidermal necrolysis (TEN) are rare but severe, potentially life threatening adverse drug reactions characterized by skin blistering. Previous studies have identified drug-specific and population-specific genetic risk factors with large effects. In this study, we report the first genome-wide association study (GWAS) of SJS/TEN induced by a variety of drugs. Our aim was to identify common genetic risk factors with large effects on SJS/TEN risk. We conducted a genome-wide analysis of 96 retrospective cases and 198 controls with a panel of over one million single-nucleotide polymorphisms (SNPs). We further improved power with about 4000 additional controls from publicly available datasets. No genome-wide significant associations with SNPs or copy number variants were observed, although several genomic regions were suggested that may have a role in predisposing to drug-induced SJS/TEN. Our GWAS did not find common, highly penetrant genetic risk factors responsible for SJS/TEN events in the cases selected.

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Year:  2011        PMID: 21221126     DOI: 10.1038/tpj.2010.84

Source DB:  PubMed          Journal:  Pharmacogenomics J        ISSN: 1470-269X            Impact factor:   3.550


  12 in total

1.  A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury.

Authors:  Casey Lynnette Overby; Jyotishman Pathak; Omri Gottesman; Krystl Haerian; Adler Perotte; Sean Murphy; Kevin Bruce; Stephanie Johnson; Jayant Talwalkar; Yufeng Shen; Steve Ellis; Iftikhar Kullo; Christopher Chute; Carol Friedman; Erwin Bottinger; George Hripcsak; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-07-09       Impact factor: 4.497

Review 2.  Clinical association between pharmacogenomics and adverse drug reactions.

Authors:  Zhi-Wei Zhou; Xiao-Wu Chen; Kevin B Sneed; Yin-Xue Yang; Xueji Zhang; Zhi-Xu He; Kevin Chow; Tianxin Yang; Wei Duan; Shu-Feng Zhou
Journal:  Drugs       Date:  2015-04       Impact factor: 9.546

3.  The International Serious Adverse Events Consortium's data sharing model.

Authors:  Jorge L Contreras; Aris Floratos; Arthur L Holden
Journal:  Nat Biotechnol       Date:  2013-01       Impact factor: 54.908

4.  Genomewide pharmacogenetics of bisphosphonate-induced osteonecrosis of the jaw: the role of RBMS3.

Authors:  Paola Nicoletti; Vassiliki M Cartsos; Penelope K Palaska; Yufeng Shen; Aris Floratos; Athanasios I Zavras
Journal:  Oncologist       Date:  2012-01-20

Review 5.  Systems biology data analysis methodology in pharmacogenomics.

Authors:  Andrei S Rodin; Grigoriy Gogoshin; Eric Boerwinkle
Journal:  Pharmacogenomics       Date:  2011-09       Impact factor: 2.533

6.  Real-time clinical note monitoring to detect conditions for rapid follow-up: A case study of clinical trial enrollment in drug-induced torsades de pointes and Stevens-Johnson syndrome.

Authors:  Sarah DeLozier; Peter Speltz; Jason Brito; Leigh Anne Tang; Janey Wang; Joshua C Smith; Dario Giuse; Elizabeth Phillips; Kristina Williams; Teresa Strickland; Giovanni Davogustto; Dan Roden; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2021-01-15       Impact factor: 4.497

Review 7.  Pharmacogenomics of adverse drug reactions.

Authors:  Ann K Daly
Journal:  Genome Med       Date:  2013-01-29       Impact factor: 11.117

8.  Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.

Authors:  Paola Nicoletti; Guruprasad P Aithal; Einar S Bjornsson; Raul J Andrade; Ashley Sawle; Marco Arrese; Huiman X Barnhart; Emmanuelle Bondon-Guitton; Paul H Hayashi; Fernando Bessone; Alfonso Carvajal; Ingolf Cascorbi; Elizabeth T Cirulli; Naga Chalasani; Anita Conforti; Sally A Coulthard; Mark J Daly; Christopher P Day; John F Dillon; Robert J Fontana; Jane I Grove; Pär Hallberg; Nelia Hernández; Luisa Ibáñez; Gerd A Kullak-Ublick; Tarja Laitinen; Dominique Larrey; M Isabel Lucena; Anke H Maitland-van der Zee; Jennifer H Martin; Mariam Molokhia; Munir Pirmohamed; Elizabeth E Powell; Shengying Qin; Jose Serrano; Camilla Stephens; Andrew Stolz; Mia Wadelius; Paul B Watkins; Aris Floratos; Yufeng Shen; Matthew R Nelson; Thomas J Urban; Ann K Daly
Journal:  Gastroenterology       Date:  2016-12-30       Impact factor: 22.682

9.  ABC transporters and the proteasome complex are implicated in susceptibility to Stevens-Johnson syndrome and toxic epidermal necrolysis across multiple drugs.

Authors:  Paola Nicoletti; Mukesh Bansal; Celine Lefebvre; Paolo Guarnieri; Yufeng Shen; Itsik Pe'er; Andrea Califano; Aris Floratos
Journal:  PLoS One       Date:  2015-06-25       Impact factor: 3.240

10.  Beta-lactam-induced immediate hypersensitivity reactions: A genome-wide association study of a deeply phenotyped cohort.

Authors:  Paola Nicoletti; Daniel F Carr; Sarah Barrett; Laurence McEvoy; Peter S Friedmann; Neil H Shear; Matthew R Nelson; Anca M Chiriac; Natalia Blanca-López; José A Cornejo-García; Francesco Gaeta; Alla Nakonechna; Maria J Torres; Cristiano Caruso; Rocco L Valluzzi; Aris Floratos; Yufeng Shen; Rebecca K Pavlos; Elizabeth J Phillips; Pascal Demoly; Antonino Romano; Miguel Blanca; Munir Pirmohamed
Journal:  J Allergy Clin Immunol       Date:  2020-10-13       Impact factor: 10.793

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