Literature DB >> 21219139

Probing free-energy surfaces with differential scanning calorimetry.

Jose M Sanchez-Ruiz1.   

Abstract

Many aspects of protein folding can be understood in terms of projections of the highly dimensional energy landscape onto a few (or even only one) particularly relevant coordinates. These free-energy surfaces can be probed conveniently from experimental differential scanning calorimetry (DSC) thermograms, as DSC provides a direct relation with the protein partition function. Free-energy surfaces thus obtained are consistent with two fundamental scenarios predicted by the energy-landscape perspective: (a) well-defined macrostates separated by significant free-energy barriers, in some cases, and, in many other cases, (b) marginal or even vanishingly small barriers, which furthermore show a good correlation with kinetics for fast- and ultrafast-folding proteins. Overall, the potential of DSC to assess free-energy surfaces for a wide variety of proteins makes it possible to address fundamental issues, such as the molecular basis of the barrier modulations produced by natural selection in response to functional requirements or to ensure kinetic stability.

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Year:  2011        PMID: 21219139     DOI: 10.1146/annurev-physchem-032210-103504

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  6 in total

1.  Irreversible denaturation of maltodextrin glucosidase studied by differential scanning calorimetry, circular dichroism, and turbidity measurements.

Authors:  Megha Goyal; Tapan K Chaudhuri; Kunihiro Kuwajima
Journal:  PLoS One       Date:  2014-12-30       Impact factor: 3.240

2.  Substitution of the Native Zn(II) with Cd(II), Co(II) and Ni(II) Changes the Downhill Unfolding Mechanism of Ros87 to a Completely Different Scenario.

Authors:  Rinaldo Grazioso; Sara García-Viñuales; Luigi Russo; Gianluca D'Abrosca; Sabrina Esposito; Laura Zaccaro; Rosa Iacovino; Danilo Milardi; Roberto Fattorusso; Gaetano Malgieri; Carla Isernia
Journal:  Int J Mol Sci       Date:  2020-11-05       Impact factor: 5.923

3.  Structural characterization of the thermal unfolding pathway of human VEGFR1 D2 domain.

Authors:  Donatella Diana; Rossella Di Stasi; Sara García-Viñuales; Lucia De Rosa; Carla Isernia; Gaetano Malgieri; Danilo Milardi; Luca D D'Andrea; Roberto Fattorusso
Journal:  FEBS J       Date:  2021-11-18       Impact factor: 5.622

Review 4.  Mechanisms of promiscuity among drug metabolizing enzymes and drug transporters.

Authors:  William M Atkins
Journal:  FEBS J       Date:  2019-11-12       Impact factor: 5.542

5.  Slow Folding of a Helical Protein: Large Barriers, Strong Internal Friction, or a Shallow, Bumpy Landscape?

Authors:  Sandhyaa Subramanian; Hemashree Golla; Kalivarathan Divakar; Adithi Kannan; David de Sancho; Athi N Naganathan
Journal:  J Phys Chem B       Date:  2020-10-02       Impact factor: 2.991

6.  Switching Protein Conformational Substates by Protonation and Mutation.

Authors:  Abhishek Narayan; Athi N Naganathan
Journal:  J Phys Chem B       Date:  2018-08-10       Impact factor: 2.991

  6 in total

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