Literature DB >> 21218176

Unifying Biological Image Formats with HDF5.

Matthew T Dougherty1, Michael J Folk, Erez Zadok, Herbert J Bernstein, Frances C Bernstein, Kevin W Eliceiri, Werner Benger, Christoph Best.   

Abstract

Entities:  

Year:  2009        PMID： 21218176      PMCID： PMC3016045          DOI： 10.1145/1562764.1562781

Source DB:  PubMed          Journal:  Commun ACM        ISSN： 0001-0782            Impact factor:   4.654


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  2 in total

1.  Integrating Digital Imaging and Communications in Medicine (DICOM)-structured reporting into the hospital environment.

Authors:  D Csipo; R E Dayhoff; P M Kuzmak
Journal:  J Digit Imaging       Date:  2001-06       Impact factor: 4.056

2.  Trends in the Electron Microscopy Data Bank (EMDB).

Authors:  Ardan Patwardhan
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-04-20       Impact factor: 7.652
  2 in total
  7 in total

1.  mz5: space- and time-efficient storage of mass spectrometry data sets.

Authors:  Mathias Wilhelm; Marc Kirchner; Judith A J Steen; Hanno Steen
Journal:  Mol Cell Proteomics       Date:  2011-09-29       Impact factor: 5.911

2.  Cooler: scalable storage for Hi-C data and other genomically labeled arrays.

Authors:  Nezar Abdennur; Leonid A Mirny
Journal:  Bioinformatics       Date:  2020-01-01       Impact factor: 6.937

3.  A quick guide to large-scale genomic data mining.

Authors:  Curtis Huttenhower; Oliver Hofmann
Journal:  PLoS Comput Biol       Date:  2010-05-27       Impact factor: 4.475

4.  OMERO: flexible, model-driven data management for experimental biology.

Authors:  Chris Allan; Jean-Marie Burel; Josh Moore; Colin Blackburn; Melissa Linkert; Scott Loynton; Donald Macdonald; William J Moore; Carlos Neves; Andrew Patterson; Michael Porter; Aleksandra Tarkowska; Brian Loranger; Jerome Avondo; Ingvar Lagerstedt; Luca Lianas; Simone Leo; Katherine Hands; Ron T Hay; Ardan Patwardhan; Christoph Best; Gerard J Kleywegt; Gianluigi Zanetti; Jason R Swedlow
Journal:  Nat Methods       Date:  2012-02-28       Impact factor: 28.547

5.  Adaptive informatics for multifactorial and high-content biological data.

Authors:  Bjorn L Millard; Mario Niepel; Michael P Menden; Jeremy L Muhlich; Peter K Sorger
Journal:  Nat Methods       Date:  2011-04-24       Impact factor: 28.547

6.  A Bit-Encoding Based New Data Structure for Time and Memory Efficient Handling of Spike Times in an Electrophysiological Setup.

Authors:  Bengt Ljungquist; Per Petersson; Anders J Johansson; Jens Schouenborg; Martin Garwicz
Journal:  Neuroinformatics       Date:  2018-04

7.  Towards an advanced testing strategy for genotoxicity using image-based 2D and 3D HepG2 DNA damage response fluorescent protein reporters.

Authors:  Bas Ter Braak; Marije Niemeijer; Liesanne Wolters; Sylvia Le Dévédec; Peter Bouwman; Bob van de Water
Journal:  Mutagenesis       Date:  2022-05-04       Impact factor: 3.000
  7 in total

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