| Literature DB >> 21217604 |
Valentina Stefanou1, Dimitris Matiadis, Georgia Melagraki, Antreas Afantitis, Giorgos Athanasellis, Olga Igglessi-Markopoulou, Vickie McKee, John Markopoulos.
Abstract
A novel short-step methodology for the synthesis in good yields of functionalized coumarins has been developed starting from an activated precursor, the N-hydroxysuccinimide ester of O-acetylsalicylic acid. The procedure is based on a tandem C-acylation-cyclization process under mild reaction conditions. The structure of 3-methoxycarbonyl-4-hydroxy coumarin has been established by X-ray diffraction analysis and its geometry was compared with optimized parameters by means of DFT calculations.Entities:
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Year: 2011 PMID: 21217604 PMCID: PMC6259271 DOI: 10.3390/molecules16010384
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 14-Hydroxy-3-substituted coumarins.
Figure 2ε-Hydroxy ferulenol (I) and ferulenoxyferulenol (II).
Figure 3Sesquiterpenecoumarins.
Scheme 1Synthesis of 3-functionalized-4-hydroxycoumarin-2-ones.
Crystal data and structure refinement for 4-hydroxy-3-methoxycarbonyl coumarin.
| Empirical formula | C11H8O5 |
| Formula weight | 220.17 |
| Temperature | 150(2) K |
| Wavelength | 0.71073 Å |
| Crystal system | Monoclinic |
| Space group | P2(1)/c |
| Unit cell dimensions | a = 3.802(3) Å |
| b = 21.945(15) Å; β= 90.097(10)°. | |
| c = 11.352(8) Å | |
| Volume | 947.1(11) Å3 |
| Z | 4 |
| Density (calculated) | 1.544 Mg/m3 |
| Absorption coefficient | 0.124 mm−1 |
| F(000) | 456 |
| Crystal size | 0.44 × 0.10 × 0.07 mm3 |
| Crystal description | colourless block |
| Theta range for data collection | 0.93 to 25.00°. |
| Index ranges | −4 ≤ h ≤ 4, −25 ≤ k ≤ 26, −13 ≤ l ≤ 13 |
| Reflections collected | 7326 |
| Independent reflections | 1686 [Rint = 0.0758] |
| Completeness to theta = 25.00° | 100.0% |
| Absorption correction | Semi-empirical from equivalents |
| Max. and min. transmission | 0.9914 and 0.9474 |
| Refinement method | Full-matrix least-squares on F2 |
| Data / restraints / parameters | 1686 / 0 / 149 |
| Goodness-of-fit on F2 | 1.028 |
| Final R indices [I > 2sigma(I)] | R1 = 0.0662, wR2 = 0.1633 |
| R indices (all data) | R1 = 0.0984, wR2 = 0.1897 |
| Largest diff. peak and hole | 0.348 and -0.399 × 10−3 Å |
Bond lengths [Å] and angles [°] for 3-methoxy-4-hydroxy coumarin.
| C(1)-O(1) | 1.199(4) | O(2)-C(2)-C(3) | 116.7(4) |
| C(1)-O(2) | 1.378(5) | O(2)-C(2)-C(7) | 121.9(4) |
| C(1)-C(9) | 1.450(5) | C(3)-C(2)-C(7) | 121.4(4) |
| O(2)-C(2) | 1.371(5) | C(2)-C(3)-C(4) | 118.9(4) |
| C(2)-C(3) | 1.374(6) | C(3)-C(4)-C(5) | 120.6(4) |
| C(2)-C(7) | 1.384(6) | C(6)-C(5)-C(4) | 120.5(4) |
| C(3)-C(4) | 1.376(6) | C(5)-C(6)-C(7) | 119.3(4) |
| C(4)-C(5) | 1.387(6) | C(2)-C(7)-C(6) | 119.3(4) |
| C(5)-C(6) | 1.372(6) | C(2)-C(7)-C(8) | 117.3(3) |
| C(6)-C(7) | 1.398(6) | C(6)-C(7)-C(8) | 123.4(4) |
| C(7)-C(8) | 1.435(6) | O(3)-C(8)-C(9) | 123.3(4) |
| C(8)-O(3) | 1.310(5) | O(3)-C(8)-C(7) | 115.6(3) |
| C(8)-C(9) | 1.375(5) | C(9)-C(8)-C(7) | 121.1(3) |
| C(9)-C(10) | 1.457(6) | C(8)-C(9)-C(1) | 120.0(3) |
| C(10)-O(4) | 1.232(5) | C(8)-C(9)-C(10) | 118.3(3) |
| C(10)-O(5) | 1.317(5) | C(1)-C(9)-C(10) | 121.7(3) |
| O(5)-C(11) | 1.441(5) | O(4)-C(10)-O(5) | 121.8(4) |
| O(1)-C(1)-O(2) | 115.0(3) | O(4)-C(10)-C(9) | 121.9(4) |
| O(1)-C(1)-C(9) | 127.8(4) | O(5)-C(10)-C(9) | 116.3(3) |
| O(2)-C(1)-C(9) | 117.2(3) | C(10)-O(5)-C(11) | 116.4(3) |
| C(2)-O(2)-C(1) | 122.4(3) |
Hydrogen bonds for 4-hydroxy-3-methoxycarbonyl coumarin [Å and °].
| D-H...A | d(D-H) | d(H...A) | D(D...A) | <(DHA) |
| O(3)-H(3A)...O(4) | 0.84 | 1.77 | 2.512(4) | 146.6 |
Figure 4X-ray structure and numbering scheme of compound 4a.
Figure 5Packing diagram of 4-hydroxy-3-methoxycarbonyl coumarin 4a.
Scheme 2Tautomeric forms of 3-substituted-4-hydroxy coumarin.
Figure 6Optimized structures for the tautomers of 3-methoxycarbonyl-4-hydroxy coumarin using DFT.
Total Energy (a.u.) and relative energy for the four tautomers.
| Total Energy (kcal/mol) | ΔΕ | |
| Tautomer a | 502236.25 | 0 |
| Tautomer b | 502222.04 | 14.21 |
| Tautomer c | 502221.33 | 14.92 |
Comparison of bond lengths and angles.
|
|
|
|
| C(1)-O(1) | 1.199 | 1.198 |
| C(8)-O(3) | 1.310 | 1.319 |
| C(10)-O(4) | 1.232 | 1.238 |
| O(2)-C(2) | 1.371 | 1.356 |
| C(10)-O(5) | 1.317 | 1.323 |
| C(1)-C(9) | 1.450 | 1.463 |
| C(9)-C(10) | 1.457 | 1.469 |
| C(8)-C(9) | 1.375 | 1.394 |
|
|
|
|
| O(1)-C(1)-O(2) | 115 | 115.9 |
| C(9)-C(10)-O(5) | 116.3 | 116.3 |
| C(10)-O(5)-C(11) | 116.3 | 116.6 |
Figure 7HOMO and LUMO orbitals of 3-methoxycarbonyl-4-hydroxy coumarin.
Orbital Energies.
| Orbital | Energy (eV) |
|---|---|
| LUMO+3 | −0.01268 |
| LUMO+2 | −0.01715 |
| LUMO+1 | −0.03766 |
| LUMO | −0.09207 |
| HOMO | −0.25767 |
| HOMO-1 | −0.27303 |
| HOMO-2 | −0.28980 |
| HOMO-3 | −0.30505 |
Total Energy and relative energy for the four tautomers after single point PCM calculations.
| Total Energy (kcal/mol) | ΔΕ | |
|---|---|---|
| Tautomer a | 502251.36 | 0 |
| Tautomer b | 502236.36 | 15.00 |
| Tautomer c | 502236.08 | 15.28 |
Figure 8HOMO (−0.25988eV) and LUMO (−0.09171eV) orbitals of 3-methoxycarbonyl-4-hydroxy coumarin after single point PCM calculations.
XYZ coordinates for tautomer a.
| Center Number | Atomic Number | Atomic Type | Coordinates (Angstroms) | ||
|---|---|---|---|---|---|
| X | Y | Z | |||
| 1 | 6 | 0 | −3.863365 | −1.026907 | 0.000004 |
| 2 | 6 | 0 | −4.135989 | 0.349539 | 0.000006 |
| 3 | 6 | 0 | −3.107716 | 1.279694 | 0.000004 |
| 4 | 6 | 0 | −1.785738 | 0.829994 | 0.000001 |
| 5 | 6 | 0 | −1.495749 | −0.540269 | −0.000001 |
| 6 | 6 | 0 | −2.552628 | −1.468517 | 0.000001 |
| 7 | 8 | 0 | −0.806136 | 1.767112 | −0.000002 |
| 8 | 6 | 0 | 0.568307 | 1.458477 | −0.000005 |
| 9 | 6 | 0 | 0.902676 | 0.034388 | −0.000002 |
| 10 | 6 | 0 | −0.105367 | −0.929393 | −0.000003 |
| 11 | 8 | 0 | 0.138342 | −2.225277 | −0.000005 |
| 12 | 6 | 0 | 2.292934 | −0.439924 | −0.000002 |
| 13 | 8 | 0 | 3.231744 | 0.492372 | 0.000011 |
| 14 | 6 | 0 | 4.599130 | 0.032938 | 0.000012 |
| 15 | 8 | 0 | 1.315559 | 2.394467 | −0.000013 |
| 16 | 8 | 0 | 2.573797 | −1.645763 | −0.000009 |
| 17 | 1 | 0 | −4.677724 | −1.740938 | 0.000006 |
| 18 | 1 | 0 | −5.163665 | 0.694595 | 0.000009 |
| 19 | 1 | 0 | −3.298328 | 2.345344 | 0.000005 |
| 20 | 1 | 0 | −2.316874 | −2.524743 | 0.000000 |
| 21 | 1 | 0 | 1.136344 | −2.329785 | −0.000006 |
| 22 | 1 | 0 | 5.197386 | 0.940375 | 0.000023 |
| 23 | 1 | 0 | 4.798717 | −0.564118 | −0.890153 |
| 24 | 1 | 0 | 4.798710 | −0.564134 | 0.890168 |
XYZ coordinates for tautomer b.
| Center Number | Atomic Number | Atomic Type | Coordinates (Angstroms) | ||
|---|---|---|---|---|---|
| X | Y | Z | |||
| 1 | 6 | 0 | −3.618148 | −1.245874 | −0.007977 |
| 2 | 6 | 0 | −3.998088 | 0.078140 | 0.245068 |
| 3 | 6 | 0 | −3.047740 | 1.089629 | 0.295254 |
| 4 | 6 | 0 | −1.709017 | 0.761144 | 0.096863 |
| 5 | 6 | 0 | −1.304270 | −0.549857 | −0.147866 |
| 6 | 6 | 0 | −2.281357 | −1.553277 | −0.207628 |
| 7 | 8 | 0 | −0.810933 | 1.805230 | 0.121572 |
| 8 | 6 | 0 | 0.524803 | 1.604765 | −0.018278 |
| 9 | 6 | 0 | 1.041859 | 0.251884 | −0.085742 |
| 10 | 6 | 0 | 0.131388 | −0.866082 | −0.340040 |
| 11 | 8 | 0 | 0.488894 | −1.980777 | −0.710457 |
| 12 | 6 | 0 | 2.457879 | 0.140135 | −0.089479 |
| 13 | 8 | 0 | 3.172725 | −0.945992 | 0.051319 |
| 14 | 8 | 0 | 3.217744 | 1.187155 | −0.227783 |
| 15 | 6 | 0 | 2.764139 | −2.092598 | 0.836929 |
| 16 | 8 | 0 | 1.214329 | 2.624762 | −0.071247 |
| 17 | 1 | 0 | −4.368400 | −2.026310 | −0.049685 |
| 18 | 1 | 0 | −5.042901 | 0.322058 | 0.399237 |
| 19 | 1 | 0 | −3.318669 | 2.122060 | 0.476953 |
| 20 | 1 | 0 | −1.954487 | −2.565527 | −0.411849 |
| 21 | 1 | 0 | 2.597225 | 1.992583 | −0.271100 |
| 22 | 1 | 0 | 3.683895 | −2.441204 | 1.303092 |
| 23 | 1 | 0 | 2.043747 | −1.791336 | 1.597193 |
| 24 | 1 | 0 | 2.328808 | −2.843394 | 0.186302 |
XYZ coordinates for tautomer c.
| Center Number | Atomic Number | Atomic Type | Coordinates (Angstroms) | ||
|---|---|---|---|---|---|
| X | Y | Z | |||
| 1 | 6 | 0 | 3.625545 | −1.219490 | −0.028375 |
| 2 | 6 | 0 | 3.991918 | 0.105914 | 0.240048 |
| 3 | 6 | 0 | 3.030236 | 1.105326 | 0.304629 |
| 4 | 6 | 0 | 1.698956 | 0.755070 | 0.102571 |
| 5 | 6 | 0 | 1.303332 | −0.553836 | −0.159337 |
| 6 | 6 | 0 | 2.293164 | −1.543919 | −0.230248 |
| 7 | 8 | 0 | 0.776087 | 1.783523 | 0.141362 |
| 8 | 6 | 0 | −0.522396 | 1.518830 | 0.014305 |
| 9 | 6 | 0 | −1.048824 | 0.229110 | −0.096703 |
| 10 | 6 | 0 | −0.132598 | −0.880766 | −0.357093 |
| 11 | 8 | 0 | −0.480906 | −1.995785 | −0.729157 |
| 12 | 6 | 0 | −2.523855 | 0.155251 | −0.147462 |
| 13 | 8 | 0 | −3.193606 | 1.163428 | −0.399711 |
| 14 | 8 | 0 | −1.227759 | 2.608730 | 0.006259 |
| 15 | 8 | 0 | −3.196434 | −0.963313 | 0.091663 |
| 16 | 6 | 0 | −2.723093 | −2.031505 | 0.940363 |
| 17 | 1 | 0 | 4.385801 | −1.989630 | −0.080094 |
| 18 | 1 | 0 | 5.034104 | 0.359492 | 0.394986 |
| 19 | 1 | 0 | 3.287543 | 2.138811 | 0.499467 |
| 20 | 1 | 0 | 1.978969 | −2.557818 | −0.445769 |
| 21 | 1 | 0 | −2.176000 | 2.299376 | −0.206636 |
| 22 | 1 | 0 | −3.600399 | −2.352457 | 1.500562 |
| 23 | 1 | 0 | −1.956518 | −1.673761 | 1.628696 |
| 24 | 1 | 0 | −2.326874 | −2.836595 | 0.329283 |