Literature DB >> 21215676

Redefining plant systems biology: from cell to ecosystem.

Joost J B Keurentjes1, Gerco C Angenent, Marcel Dicke, Vítor A P Martins Dos Santos, Jaap Molenaar, Wim H van der Putten, Peter C de Ruiter, Paul C Struik, Bart P H J Thomma.   

Abstract

Molecular biologists typically restrict systems biology to cellular levels. By contrast, ecologists define biological systems as communities of interacting individuals at different trophic levels that process energy, nutrient and information flows. Modern plant breeding needs to increase agricultural productivity while decreasing the ecological footprint. This requires a holistic systems biology approach that couples different aggregation levels while considering the variables that affect these biological systems from cell to community. The challenge is to generate accurate experimental data that can be used together with modelling concepts and techniques that allow experimentally verifying in silico predictions. The coupling of aggregation levels in plant sciences, termed Integral Quantification of Biological Organization (IQ(BiO)), might enhance our abilities to generate new desired plant phenotypes.
Copyright © 2010 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 21215676     DOI: 10.1016/j.tplants.2010.12.002

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  17 in total

Review 1.  Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Sanjay Mohan Gupta; Vikram Singh Gaur; Dinesh Pandey
Journal:  OMICS       Date:  2015-10

Review 2.  Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

Authors:  Kambiz Baghalian; Mohammad-Reza Hajirezaei; Falk Schreiber
Journal:  Plant Cell       Date:  2014-10-24       Impact factor: 11.277

Review 3.  Plant systems biology: insights, advances and challenges.

Authors:  Bhavisha P Sheth; Vrinda S Thaker
Journal:  Planta       Date:  2014-03-27       Impact factor: 4.116

4.  In Silico Analysis of the Regulation of the Photosynthetic Electron Transport Chain in C3 Plants.

Authors:  Alejandro Morales; Xinyou Yin; Jeremy Harbinson; Steven M Driever; Jaap Molenaar; David M Kramer; Paul C Struik
Journal:  Plant Physiol       Date:  2017-09-18       Impact factor: 8.340

5.  Optimized cultivar deployment improves the efficiency and stability of sunflower crop production at national scale.

Authors:  Pierre Casadebaig; Arnaud Gauffreteau; Amélia Landré; Nicolas B Langlade; Emmanuelle Mestries; Julien Sarron; Ronan Trépos; Patrick Vincourt; Philippe Debaeke
Journal:  Theor Appl Genet       Date:  2022-03-16       Impact factor: 5.699

6.  Mathematical Modeling Reveals That Sucrose Regulates Leaf Senescence via Dynamic Sugar Signaling Pathways.

Authors:  Muhammad Asim; Quaid Hussain; Xiaolin Wang; Yanguo Sun; Haiwei Liu; Rayyan Khan; Shasha Du; Yi Shi; Yan Zhang
Journal:  Int J Mol Sci       Date:  2022-06-10       Impact factor: 6.208

7.  Network inference via adaptive optimal design.

Authors:  Johannes D Stigter; Jaap Molenaar
Journal:  BMC Res Notes       Date:  2012-09-24

8.  A holistic approach to marine eco-systems biology.

Authors:  Eric Karsenti; Silvia G Acinas; Peer Bork; Chris Bowler; Colomban De Vargas; Jeroen Raes; Matthew Sullivan; Detlev Arendt; Francesca Benzoni; Jean-Michel Claverie; Mick Follows; Gaby Gorsky; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Stéphane Pesant; Emmanuel Georges Reynaud; Christian Sardet; Michael E Sieracki; Sabrina Speich; Didier Velayoudon; Jean Weissenbach; Patrick Wincker
Journal:  PLoS Biol       Date:  2011-10-18       Impact factor: 8.029

9.  Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches.

Authors:  Camila Caldana; Alisdair R Fernie; Lothar Willmitzer; Dirk Steinhauser
Journal:  Front Plant Sci       Date:  2012-12-05       Impact factor: 5.753

Review 10.  Integrated -omics: a powerful approach to understanding the heterogeneous lignification of fibre crops.

Authors:  Gea Guerriero; Kjell Sergeant; Jean-François Hausman
Journal:  Int J Mol Sci       Date:  2013-05-24       Impact factor: 5.923

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