Literature DB >> 21214377

Clinical evaluation of the potential utility of computational modeling as an HIV treatment selection tool by physicians with considerable HIV experience.

Brendan A Larder1, Andrew Revell, Joann M Mican, Brian K Agan, Marianne Harris, Carlo Torti, Ilaria Izzo, Julia A Metcalf, Migdalia Rivera-Goba, Vincent C Marconi, Dechao Wang, Daniel Coe, Brian Gazzard, Julio Montaner, H Clifford Lane.   

Abstract

The HIV Resistance Response Database Initiative (RDI), which comprises a small research team in the United Kingdom and collaborating clinical centers in more than 15 countries, has used antiretroviral treatment and response data from thousands of patients around the world to develop computational models that are highly predictive of virologic response. The potential utility of such models as a tool for assisting treatment selection was assessed in two clinical pilot studies: a prospective study in Canada and Italy, which was terminated early because of the availability of new drugs not covered by the system, and a retrospective study in the United States. For these studies, a Web-based user interface was constructed to provide access to the models. Participating physicians entered baseline data for cases of treatment failure and then registered their treatment intention. They then received a report listing the five alternative regimens that the models predicted would be most effective plus their own selection, ranked in order of predicted virologic response. The physicians then entered their final treatment decision. Twenty-three physicians entered 114 cases (75 unique cases with 39 entered twice by different physicians). Overall, 33% of treatment decisions were changed following review of the report. The final treatment decisions and the best of the RDI alternatives were predicted to produce greater virologic responses and involve fewer drugs than the original selections. Most physicians found the system easy to use and understand. All but one indicated they would use the system if it were available, particularly for highly treatment-experienced cases with challenging resistance profiles. Despite limitations, the first clinical evaluation of this approach by physicians with substantial HIV-experience suggests that it has the potential to deliver clinical and economic benefits.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21214377      PMCID: PMC3030912          DOI: 10.1089/apc.2010.0254

Source DB:  PubMed          Journal:  AIDS Patient Care STDS        ISSN: 1087-2914            Impact factor:   5.078


  13 in total

Review 1.  Variety of interpretation systems for human immunodeficiency virus type 1 genotyping: confirmatory information or additional confusion?

Authors:  M Stürmer; H W Doerr; W Preiser
Journal:  Curr Drug Targets Infect Disord       Date:  2003-12

2.  Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes.

Authors:  Niko Beerenwinkel; Martin Däumer; Mark Oette; Klaus Korn; Daniel Hoffmann; Rolf Kaiser; Thomas Lengauer; Joachim Selbig; Hauke Walter
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 3.  Computational methods for the design of effective therapies against drug resistant HIV strains.

Authors:  Niko Beerenwinkel; Tobias Sing; Thomas Lengauer; Jörg Rahnenführer; Kirsten Roomp; Igor Savenkov; Roman Fischer; Daniel Hoffmann; Joachim Selbig; Klaus Korn; Hauke Walter; Thomas Berg; Patrick Braun; Gerd Fätkenheuer; Mark Oette; Jürgen Rockstroh; Bernd Kupfer; Rolf Kaiser; Martin Däumer
Journal:  Bioinformatics       Date:  2005-09-06       Impact factor: 6.937

4.  The development of artificial neural networks to predict virological response to combination HIV therapy.

Authors:  Brendan Larder; Dechao Wang; Andrew Revell; Julio Montaner; Richard Harrigan; Frank De Wolf; Joep Lange; Scott Wegner; Lidia Ruiz; Maria Jésus Pérez-Elías; Sean Emery; Jose Gatell; Antonella D'Arminio Monforte; Carlo Torti; Maurizio Zazzi; Clifford Lane
Journal:  Antivir Ther       Date:  2007

5.  Variable prediction of antiretroviral treatment outcome by different systems for interpreting genotypic human immunodeficiency virus type 1 drug resistance.

Authors:  Andrea De Luca; Antonella Cingolani; Simona Di Giambenedetto; Maria Paola Trotta; Francesco Baldini; Maria Gabriella Rizzo; Ada Bertoli; Giuseppina Liuzzi; Pasquale Narciso; Rita Murri; Adriana Ammassari; Carlo Federico Perno; Andrea Antinori
Journal:  J Infect Dis       Date:  2003-05-22       Impact factor: 5.226

6.  Antiretroviral treatment of adult HIV infection: 2010 recommendations of the International AIDS Society-USA panel.

Authors:  Melanie A Thompson; Judith A Aberg; Pedro Cahn; Julio S G Montaner; Giuliano Rizzardini; Amalio Telenti; José M Gatell; Huldrych F Günthard; Scott M Hammer; Martin S Hirsch; Donna M Jacobsen; Peter Reiss; Douglas D Richman; Paul A Volberding; Patrick Yeni; Robert T Schooley
Journal:  JAMA       Date:  2010-07-21       Impact factor: 56.272

7.  Comparison between rules-based human immunodeficiency virus type 1 genotype interpretations and real or virtual phenotype: concordance analysis and correlation with clinical outcome in heavily treated patients.

Authors:  Carlo Torti; Eugenia Quiros-Roldan; Wilco Keulen; Luigia Scudeller; Sergio Lo Caputo; Charles Boucher; Francesco Castelli; Francesco Mazzotta; Piera Pierotti; Anne Mieke Been-Tiktak; Giovanni Buccoliero; Michele De Gennaro; Giampiero Carosi; Carmine Tinelli
Journal:  J Infect Dis       Date:  2003-07-01       Impact factor: 5.226

8.  Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel.

Authors:  Martin S Hirsch; Huldrych F Günthard; Jonathan M Schapiro; Françoise Brun-Vézinet; Bonaventura Clotet; Scott M Hammer; Victoria A Johnson; Daniel R Kuritzkes; John W Mellors; Deenan Pillay; Patrick G Yeni; Donna M Jacobsen; Douglas D Richman
Journal:  Clin Infect Dis       Date:  2008-07-15       Impact factor: 9.079

9.  Comparison of nine resistance interpretation systems for HIV-1 genotyping.

Authors:  Martin Stürmer; Hans Wilhelm Doerr; Schlomo Staszewski; Wolfgang Preiser
Journal:  Antivir Ther       Date:  2003-06

10.  The relation between baseline HIV drug resistance and response to antiretroviral therapy: re-analysis of retrospective and prospective studies using a standardized data analysis plan.

Authors:  V DeGruttola; L Dix; R D'Aquila; D Holder; A Phillips; M Ait-Khaled; J Baxter; P Clevenbergh; S Hammer; R Harrigan; D Katzenstein; R Lanier; M Miller; M Para; S Yerly; A Zolopa; J Murray; A Patick; V Miller; S Castillo; L Pedneault; J Mellors
Journal:  Antivir Ther       Date:  2000-03
View more
  8 in total

1.  2018 update to the HIV-TRePS system: the development of new computational models to predict HIV treatment outcomes, with or without a genotype, with enhanced usability for low-income settings.

Authors:  Andrew D Revell; Dechao Wang; Maria-Jesus Perez-Elias; Robin Wood; Dolphina Cogill; Hugo Tempelman; Raph L Hamers; Peter Reiss; Ard I van Sighem; Catherine A Rehm; Anton Pozniak; Julio S G Montaner; H Clifford Lane; Brendan A Larder
Journal:  J Antimicrob Chemother       Date:  2018-08-01       Impact factor: 5.790

2.  Computational models can predict response to HIV therapy without a genotype and may reduce treatment failure in different resource-limited settings.

Authors:  A D Revell; D Wang; R Wood; C Morrow; H Tempelman; R L Hamers; G Alvarez-Uria; A Streinu-Cercel; L Ene; A M J Wensing; F DeWolf; M Nelson; J S Montaner; H C Lane; B A Larder
Journal:  J Antimicrob Chemother       Date:  2013-03-13       Impact factor: 5.790

3.  An update to the HIV-TRePS system: the development and evaluation of new global and local computational models to predict HIV treatment outcomes, with or without a genotype.

Authors:  Andrew D Revell; Dechao Wang; Robin Wood; Carl Morrow; Hugo Tempelman; Raph L Hamers; Peter Reiss; Ard I van Sighem; Mark Nelson; Julio S G Montaner; H Clifford Lane; Brendan A Larder
Journal:  J Antimicrob Chemother       Date:  2016-06-20       Impact factor: 5.790

4.  An update to the HIV-TRePS system: the development of new computational models that do not require a genotype to predict HIV treatment outcomes.

Authors:  Andrew D Revell; Dechao Wang; Robin Wood; Carl Morrow; Hugo Tempelman; Raph Hamers; Gerardo Alvarez-Uria; Adrian Streinu-Cercel; Luminita Ene; Annemarie Wensing; Peter Reiss; Ard I van Sighem; Mark Nelson; Sean Emery; Julio S G Montaner; H Clifford Lane; Brendan A Larder
Journal:  J Antimicrob Chemother       Date:  2013-11-24       Impact factor: 5.790

5.  Predictors of first-line antiretroviral therapy discontinuation due to drug-related adverse events in HIV-infected patients: a retrospective cohort study.

Authors:  Mattia C F Prosperi; Massimiliano Fabbiani; Iuri Fanti; Mauro Zaccarelli; Manuela Colafigli; Annalisa Mondi; Alessandro D'Avino; Alberto Borghetti; Roberto Cauda; Simona Di Giambenedetto
Journal:  BMC Infect Dis       Date:  2012-11-12       Impact factor: 3.090

6.  Potential impact of a free online HIV treatment response prediction system for reducing virological failures and drug costs after antiretroviral therapy failure in a resource-limited setting.

Authors:  Andrew D Revell; Gerardo Alvarez-Uria; Dechao Wang; Anton Pozniak; Julio S Montaner; H Clifford Lane; Brendan A Larder
Journal:  Biomed Res Int       Date:  2013-09-24       Impact factor: 3.411

7.  Computational models as predictors of HIV treatment outcomes for the Phidisa cohort in South Africa.

Authors:  Andrew Revell; Paul Khabo; Lotty Ledwaba; Sean Emery; Dechao Wang; Robin Wood; Carl Morrow; Hugo Tempelman; Raph L Hamers; Peter Reiss; Ard van Sighem; Anton Pozniak; Julio Montaner; H Clifford Lane; Brendan Larder
Journal:  South Afr J HIV Med       Date:  2016-06-30       Impact factor: 2.744

8.  2021 update to HIV-TRePS: a highly flexible and accurate system for the prediction of treatment response from incomplete baseline information in different healthcare settings.

Authors:  Andrew D Revell; Dechao Wang; Maria-Jesus Perez-Elias; Robin Wood; Dolphina Cogill; Hugo Tempelman; Raph L Hamers; Peter Reiss; Ard van Sighem; Catherine A Rehm; Brian Agan; Gerardo Alvarez-Uria; Julio S G Montaner; H Clifford Lane; Brendan A Larder
Journal:  J Antimicrob Chemother       Date:  2021-06-18       Impact factor: 5.790

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.