Literature DB >> 21209661

Sensing the anomeric effect in a solvent-free environment.

Emilio J Cocinero1, Pierre Carçabal, Timothy D Vaden, John P Simons, Benjamin G Davis.   

Abstract

The anomeric effect is a chemical phenomenon that refers to an observed stabilization of six-membered carbohydrate rings when they contain an electronegative substituent at the C1 position of the ring. This stereoelectronic effect influences the three-dimensional shapes of many biological molecules. It can be manifested not only in this classical manner involving interaction of the endocyclic oxygen atom (O5) found in such sugars with the C1 substituent (endo-anomeric effect) but also through a corresponding interaction of the electronegative exocyclic substituent with O5 (exo-anomeric effect). However, the underlying physical origin(s) of this phenomenon is still not clear. Here we show, using a combination of laser spectroscopy and computational analysis, that a truncated peptide motif can engage the two anomers of an isolated sugar in the gas phase, an environment lacking extraneous factors which could confound the analysis. (Anomers are isomers that differ in the orientation of the substituent at C1.) Complexes formed between the peptide and the α- or β-anomers of d-galactose are nearly identical structurally; however, the strength of the polarization of their interactions with the peptide differs greatly. Natural bond order calculations support this observation, and together they reveal the dominance of the exo- over the endo-anomeric effect. As interactions between oxygen atoms at positions C1 and C2 (O1 and O2, respectively) on the pyranose ring can alter the exo/endo ratio of a carbohydrate, our results suggest that it will be important to re-evaluate the influence, and biological effects, of substituents at position C2 in sugars.

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Year:  2011        PMID: 21209661     DOI: 10.1038/nature09693

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  4 in total

1.  Computational evidence that hyperconjugative interactions are not responsible for the anomeric effect.

Authors:  Yirong Mo
Journal:  Nat Chem       Date:  2010-07-04       Impact factor: 24.427

2.  Atoms in molecules interpretation of the anomeric effect in the O--C--O unit.

Authors:  Antonio Vila; Ricardo A Mosquera
Journal:  J Comput Chem       Date:  2007-07-15       Impact factor: 3.376

3.  Ligand close packing, molecular compactness, the methyl tilt, molecular conformations, and a new model for the anomeric effect.

Authors:  Ronald J Gillespie; Edward A Robinson; Julien Pilmé
Journal:  Chemistry       Date:  2010-03-22       Impact factor: 5.236

4.  The anomeric effect revisited. A possible role of the CH/n hydrogen bond.

Authors:  Osamu Takahashi; Katsuyoshi Yamasaki; Yuji Kohno; Ryuta Ohtaki; Kazuyoshi Ueda; Hiroko Suezawa; Yoji Umezawa; Motohiro Nishio
Journal:  Carbohydr Res       Date:  2007-03-02       Impact factor: 2.104

  4 in total
  11 in total

1.  Biologically-inspired peptide reagents for enhancing IMS-MS analysis of carbohydrates.

Authors:  Brian C Bohrer; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-01       Impact factor: 3.109

2.  IR-IR Conformation Specific Spectroscopy of Na+(Glucose) Adducts.

Authors:  Jonathan M Voss; Steven J Kregel; Kaitlyn C Fischer; Etienne Garand
Journal:  J Am Soc Mass Spectrom       Date:  2017-09-27       Impact factor: 3.109

3.  Ground-state destabilization in orotate phosphoribosyltransferases by binding isotope effects.

Authors:  Yong Zhang; Vern L Schramm
Journal:  Biochemistry       Date:  2011-05-06       Impact factor: 3.162

4.  Anomeric memory of the glycosidic bond upon fragmentation and its consequences for carbohydrate sequencing.

Authors:  Baptiste Schindler; Loïc Barnes; Gina Renois; Christopher Gray; Stéphane Chambert; Sébastien Fort; Sabine Flitsch; Claire Loison; Abdul-Rahman Allouche; Isabelle Compagnon
Journal:  Nat Commun       Date:  2017-10-17       Impact factor: 14.919

5.  Direct Experimental Characterization of Glycosyl Cations by Infrared Ion Spectroscopy.

Authors:  Hidde Elferink; Marion E Severijnen; Jonathan Martens; Rens A Mensink; Giel Berden; Jos Oomens; Floris P J T Rutjes; Anouk M Rijs; Thomas J Boltje
Journal:  J Am Chem Soc       Date:  2018-05-07       Impact factor: 15.419

6.  Modulation of Conformational Preferences of Heteroaromatic Ethers and Amides through Protonation and Ionization: Charge Effect.

Authors:  Wenshuai Dai; Zhe Zhang; Yikui Du
Journal:  ChemistryOpen       Date:  2019-06-11       Impact factor: 2.911

7.  Observation of the Unbiased Conformers of Putative DNA-Scaffold Ribosugars.

Authors:  Camilla Calabrese; Iciar Uriarte; Aran Insausti; Montserrat Vallejo-López; Francisco J Basterretxea; Stephen A Cochrane; Benjamin G Davis; Francisco Corzana; Emilio J Cocinero
Journal:  ACS Cent Sci       Date:  2020-02-18       Impact factor: 14.553

Review 8.  Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain.

Authors:  Sjors Bakels; Marie-Pierre Gaigeot; Anouk M Rijs
Journal:  Chem Rev       Date:  2020-02-19       Impact factor: 60.622

9.  High conductance values in π-folded molecular junctions.

Authors:  Marco Carini; Marta P Ruiz; Imanol Usabiaga; José A Fernández; Emilio J Cocinero; Manuel Melle-Franco; Ismael Diez-Perez; Aurelio Mateo-Alonso
Journal:  Nat Commun       Date:  2017-05-18       Impact factor: 14.919

10.  Fluorine-Induced Pseudo-Anomeric Effects in Methoxycyclohexanes through Electrostatic 1,3-Diaxial Interactions.

Authors:  Bruno A Piscelli; William Sanders; Cihang Yu; Nawaf Al Maharik; Thomas Lebl; Rodrigo A Cormanich; David O'Hagan
Journal:  Chemistry       Date:  2020-08-18       Impact factor: 5.020

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