Literature DB >> 21208983

Wave-spec: a preprocessing package for mass spectrometry data.

Ming Li1, Shuo Chen, Joan Zhang, Heidi Chen, Yu Shyr.   

Abstract

UNLABELLED: Wave-spec is a pre-processing package for mass spectrometry (MS) data. The package includes several novel algorithms that overcome conventional difficulties with the pre-processing of such data. In this application note, we demonstrate step-by-step use of this package on a real-world MALDI dataset. AVAILABILITY: The package can be downloaded at http://www.vicc.org/biostatistics/supp.php. A shared mailbox (wave-spec@vanderbilt.edu) also is available for questions regarding application of the package.

Mesh:

Year:  2011        PMID: 21208983      PMCID: PMC3105479          DOI: 10.1093/bioinformatics/btq724

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  A novel comprehensive wave-form MS data processing method.

Authors:  Shuo Chen; Ming Li; Don Hong; Dean Billheimer; Huiming Li; Baogang J Xu; Yu Shyr
Journal:  Bioinformatics       Date:  2009-01-28       Impact factor: 6.937

2.  Mass spectrometry to classify non-small-cell lung cancer patients for clinical outcome after treatment with epidermal growth factor receptor tyrosine kinase inhibitors: a multicohort cross-institutional study.

Authors:  Fumiko Taguchi; Benjamin Solomon; Vanesa Gregorc; Heinrich Roder; Robert Gray; Kazuo Kasahara; Makoto Nishio; Julie Brahmer; Anna Spreafico; Vienna Ludovini; Pierre P Massion; Rafal Dziadziuszko; Joan Schiller; Julia Grigorieva; Maxim Tsypin; Stephen W Hunsucker; Richard Caprioli; Mark W Duncan; Fred R Hirsch; Paul A Bunn; David P Carbone
Journal:  J Natl Cancer Inst       Date:  2007-06-06       Impact factor: 13.506

  2 in total
  1 in total

1.  Informed baseline subtraction of proteomic mass spectrometry data aided by a novel sliding window algorithm.

Authors:  Tyman E Stanford; Christopher J Bagley; Patty J Solomon
Journal:  Proteome Sci       Date:  2016-12-07       Impact factor: 2.480

  1 in total

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