Literature DB >> 21206054

The mimivirus R355 gene product: preliminary crystallographic analysis of a putative ubiquitin-like protein-specific protease.

Sandra Jeudy1, Audrey Lartigue, Pascal Mansuelle, Yuki Ogata, Chantal Abergel.   

Abstract

The complete genome sequence of the largest known double-stranded DNA virus, mimivirus, reveals the presence of a gene (denoted R355) that potentially encodes a cysteine protease that is expressed late (after 6 h) in the infectious cycle of the virus. In order to verify a sequence-based functional prediction and understand its role during the infectious process, the R355 protein was produced to assay its proteolytic activity and solve its three-dimensional structure. Here, the preliminary crystallographic analysis of the recombinant viral protein is reported. The crystals belonged to the orthorhombic space group P2(1)2(1)2(1), with a monomer in the asymmetric unit. A MAD data set was used for preliminary phasing using the selenium signal from a selenomethionine-substituted protein crystal.

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Year:  2010        PMID: 21206054      PMCID: PMC3080002          DOI: 10.1107/S1744309110050785

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets.

Authors:  Chantal Abergel; Bruno Coutard; Deborah Byrne; Sabine Chenivesse; Jean-Baptiste Claude; Céline Deregnaucourt; Thierry Fricaux; Celine Gianesini-Boutreux; Sandra Jeudy; Régine Lebrun; Caroline Maza; Cédric Notredame; Olivier Poirot; Karsten Suhre; Majorie Varagnol; Jean-Michel Claverie
Journal:  J Struct Funct Genomics       Date:  2003

2.  The 1.2-megabase genome sequence of Mimivirus.

Authors:  Didier Raoult; Stéphane Audic; Catherine Robert; Chantal Abergel; Patricia Renesto; Hiroyuki Ogata; Bernard La Scola; Marie Suzan; Jean-Michel Claverie
Journal:  Science       Date:  2004-10-14       Impact factor: 47.728

3.  Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products.

Authors:  Patricia Renesto; Chantal Abergel; Philippe Decloquement; Danielle Moinier; Saïd Azza; Hiroyuki Ogata; Patrick Fourquet; Jean-Pierre Gorvel; Jean-Michel Claverie
Journal:  J Virol       Date:  2006-09-13       Impact factor: 5.103

4.  mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus.

Authors:  Matthieu Legendre; Stéphane Audic; Olivier Poirot; Pascal Hingamp; Virginie Seltzer; Deborah Byrne; Audrey Lartigue; Magali Lescot; Alain Bernadac; Julie Poulain; Chantal Abergel; Jean-Michel Claverie
Journal:  Genome Res       Date:  2010-04-01       Impact factor: 9.043

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  African Swine Fever virus proteinase is essential for core maturation and infectivity.

Authors:  Alí Alejo; Germán Andrés; María L Salas
Journal:  J Virol       Date:  2003-05       Impact factor: 5.103

7.  African swine fever virus protease, a new viral member of the SUMO-1-specific protease family.

Authors:  G Andrés; A Alejo; C Simón-Mateo; M L Salas
Journal:  J Biol Chem       Date:  2001-01-05       Impact factor: 5.157

8.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

9.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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