Literature DB >> 21206015

Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis.

Takanori Miyamoto1, Yasuko Asahina, Shohei Miyazaki, Hidetoshi Shimizu, Umeharu Ohto, Shuji Noguchi, Yoshinori Satow.   

Abstract

The crystal structure of SEp22, a DNA-binding protein from starved cells from Salmonella enterica subsp. enterica serovar Enteritidis, has been determined in two forms: the native state at 1.25 Å resolution and an iron-soaked form at 1.30 Å resolution. The SEp22 protomers form a dodecameric shell with 23 symmetry and a single iron ion per protomer was found at the ferroxidase centre in the iron-soaked form. Along the threefold axes of the 23 symmetry, hydrophilic Asp channels that consist of Asp146 were found. Iron ions may flow into the cavity of the dodecameric shell through the Asp channels.

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Year:  2010        PMID: 21206015      PMCID: PMC3079963          DOI: 10.1107/S1744309110043113

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

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Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

Review 2.  Pathways of oxidative damage.

Authors:  James A Imlay
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

3.  The multi-layered structure of Dps with a novel di-nuclear ferroxidase center.

Authors:  Bin Ren; Gudrun Tibbelin; Tsutomu Kajino; Osamu Asami; Rudolf Ladenstein
Journal:  J Mol Biol       Date:  2003-06-06       Impact factor: 5.469

4.  SuperPose: a simple server for sophisticated structural superposition.

Authors:  Rajarshi Maiti; Gary H Van Domselaar; Haiyan Zhang; David S Wishart
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

6.  Antioxidant Dps protein from the thermophilic cyanobacterium Thermosynechococcus elongatus.

Authors:  Stefano Franceschini; Pierpaolo Ceci; Flaminia Alaleona; Emilia Chiancone; Andrea Ilari
Journal:  FEBS J       Date:  2006-10-03       Impact factor: 5.542

7.  Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. A ferritin-like DNA-binding protein of Escherichia coli.

Authors:  Guanghua Zhao; Pierpaolo Ceci; Andrea Ilari; Laura Giangiacomo; Thomas M Laue; Emilia Chiancone; N Dennis Chasteen
Journal:  J Biol Chem       Date:  2002-05-16       Impact factor: 5.157

8.  Iron-oxo clusters biomineralizing on protein surfaces: structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states.

Authors:  Kornelius Zeth; Stefanie Offermann; Lars-Oliver Essen; Dieter Oesterhelt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-13       Impact factor: 11.205

9.  Role of N and C-terminal tails in DNA binding and assembly in Dps: structural studies of Mycobacterium smegmatis Dps deletion mutants.

Authors:  Siddhartha Roy; Ramachandran Saraswathi; Surbhi Gupta; K Sekar; Dipankar Chatterji; M Vijayan
Journal:  J Mol Biol       Date:  2007-05-10       Impact factor: 5.469

10.  The crystal structures of Lactococcus lactis MG1363 Dps proteins reveal the presence of an N-terminal helix that is required for DNA binding.

Authors:  Timothy J Stillman; Manisha Upadhyay; Valia A Norte; Svetlana E Sedelnikova; Maria Carradus; Svetomir Tzokov; Per A Bullough; Claire A Shearman; Michael J Gasson; Colin H Williams; Peter J Artymiuk; Jeffrey Green
Journal:  Mol Microbiol       Date:  2005-08       Impact factor: 3.501

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  5 in total

1.  A new crystal lattice structure of Helicobacter pylori neutrophil-activating protein (HP-NAP).

Authors:  Osamu Tsuruta; Hideshi Yokoyama; Satoshi Fujii
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-01-25

2.  Structure of yeast Ape1 and its role in autophagic vesicle formation.

Authors:  Ming-Yuan Su; Wen-Hsin Peng; Meng-Ru Ho; Shih-Chieh Su; Yuan-Chih Chang; Guang-Chao Chen; Chung-I Chang
Journal:  Autophagy       Date:  2015       Impact factor: 16.016

3.  Loss of kallikrein-related peptidase 7 exacerbates amyloid pathology in Alzheimer's disease model mice.

Authors:  Kiwami Kidana; Takuya Tatebe; Kaori Ito; Norikazu Hara; Akiyoshi Kakita; Takashi Saito; Sho Takatori; Yasuyoshi Ouchi; Takeshi Ikeuchi; Mitsuhiro Makino; Takaomi C Saido; Masahiro Akishita; Takeshi Iwatsubo; Yukiko Hori; Taisuke Tomita
Journal:  EMBO Mol Med       Date:  2018-03       Impact factor: 12.137

4.  Crystallographic characterization of a marine invertebrate ferritin from the sea cucumber Apostichopus japonicus.

Authors:  Yan Wu; Tinghong Ming; Chunheng Huo; Xiaoting Qiu; Chang Su; Chenyang Lu; Jun Zhou; Ye Li; Xiurong Su
Journal:  FEBS Open Bio       Date:  2022-02-07       Impact factor: 2.693

Review 5.  Structures and metal-binding properties of Helicobacter pylori neutrophil-activating protein with a di-nuclear ferroxidase center.

Authors:  Hideshi Yokoyama; Satoshi Fujii
Journal:  Biomolecules       Date:  2014-06-26
  5 in total

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