Literature DB >> 21204261

PRIDEViewer: a novel user-friendly interface to visualize PRIDE XML files.

J Alberto Medina-Aunon1, José M Carazo, Juan Pablo Albar.   

Abstract

Current standardization initiatives have greatly contributed to share the information derived by proteomics experiments. One of these initiatives is the XML-based repository PRIDE (PRoteomics IDEntification database), although an XML-based document does not appear to present a user-friendly view at the first glance. PRIDEViewer is a novel Java-based application that presents the information available in a PRIDE XML file in a user-friendly manner, facilitating the interaction among end users as well as the understanding and evaluation of the compiled information. PRIDEViewer is freely available at: http://proteo.cnb.csic.es/prideviewer/.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Mesh:

Year:  2010        PMID: 21204261     DOI: 10.1002/pmic.201000448

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  4 in total

1.  The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards.

Authors:  J Alberto Medina-Aunon; Salvador Martínez-Bartolomé; Miguel A López-García; Emilio Salazar; Rosana Navajas; Andrew R Jones; Alberto Paradela; Juan P Albar
Journal:  Mol Cell Proteomics       Date:  2011-10       Impact factor: 5.911

2.  Access guide to human proteinpedia.

Authors:  Babylakshmi Muthusamy; Joji Kurian Thomas; T S Keshava Prasad; Akhilesh Pandey
Journal:  Curr Protoc Bioinformatics       Date:  2013-03

3.  A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics.

Authors:  Jenna Kenyani; J Alberto Medina-Aunon; Salvador Martinez-Bartolomé; Juan-Pablo Albar; Jonathan M Wastling; Andrew R Jones
Journal:  BMC Res Notes       Date:  2011-03-28

4.  PRIDE Inspector: a tool to visualize and validate MS proteomics data.

Authors:  Rui Wang; Antonio Fabregat; Daniel Ríos; David Ovelleiro; Joseph M Foster; Richard G Côté; Johannes Griss; Attila Csordas; Yasset Perez-Riverol; Florian Reisinger; Henning Hermjakob; Lennart Martens; Juan Antonio Vizcaíno
Journal:  Nat Biotechnol       Date:  2012-02-08       Impact factor: 54.908

  4 in total

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