Literature DB >> 21204038

Integrative systems biology approaches to identify and prioritize disease and drug candidate genes.

Vivek Kaimal1, Divya Sardana, Eric E Bardes, Ranga Chandra Gudivada, Jing Chen, Anil G Jegga.   

Abstract

Although a number of computational approaches have been developed to integrate data from multiple sources for the purpose of predicting or prioritizing candidate disease genes, relatively few of them focus on identifying or ranking drug targets. To address this deficit, we have developed an approach to specifically identify and prioritize disease and drug candidate genes. In this chapter, we demonstrate the applicability of integrative systems-biology-based approaches to identify potential drug targets and candidate genes by employing information extracted from public databases. We illustrate the method in detail using examples of two neurodegenerative diseases (Alzheimer's and Parkinson's) and one neuropsychiatric disease (Schizophrenia).

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Year:  2011        PMID: 21204038     DOI: 10.1007/978-1-61737-954-3_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Applying Systems Biology Methodology To Identify Genetic Factors Possibly Associated with Recovery after Traumatic Brain Injury.

Authors:  Brad G Kurowski; Amery Treble-Barna; Alexis J Pitzer; Shari L Wade; Lisa J Martin; Ranjit S Chima; Anil Jegga
Journal:  J Neurotrauma       Date:  2017-05-03       Impact factor: 5.269

2.  Network and pathway enrichment analysis of Attention Deficit/Hyperactivity Disorder candidate genes.

Authors:  Pratichi Singh
Journal:  Indian J Psychiatry       Date:  2020-07-27       Impact factor: 1.759

3.  Sox17 regulates insulin secretion in the normal and pathologic mouse β cell.

Authors:  Diva Jonatan; Jason R Spence; Anna M Method; Matthew Kofron; Katie Sinagoga; Leena Haataja; Peter Arvan; Gail H Deutsch; James M Wells
Journal:  PLoS One       Date:  2014-08-21       Impact factor: 3.240

4.  Integrative topological analysis of mass spectrometry data reveals molecular features with clinical relevance in esophageal squamous cell carcinoma.

Authors:  She-Gan Gao; Rui-Min Liu; Yun-Gang Zhao; Pei Wang; Douglas G Ward; Guang-Chao Wang; Xiang-Qian Guo; Juan Gu; Wan-Bin Niu; Tian Zhang; Ashley Martin; Zhi-Peng Guo; Xiao-Shan Feng; Yi-Jun Qi; Yuan-Fang Ma
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

5.  Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL).

Authors:  Juliane Fluck; Sumit Madan; Sam Ansari; Alpha T Kodamullil; Reagon Karki; Majid Rastegar-Mojarad; Natalie L Catlett; William Hayes; Justyna Szostak; Julia Hoeng; Manuel Peitsch
Journal:  Database (Oxford)       Date:  2016-08-23       Impact factor: 3.451

6.  Construction of biological networks from unstructured information based on a semi-automated curation workflow.

Authors:  Justyna Szostak; Sam Ansari; Sumit Madan; Juliane Fluck; Marja Talikka; Anita Iskandar; Hector De Leon; Martin Hofmann-Apitius; Manuel C Peitsch; Julia Hoeng
Journal:  Database (Oxford)       Date:  2015-06-17       Impact factor: 3.451

7.  Integrated Network and Gene Ontology Analysis Identifies Key Genes and Pathways for Coronary Artery Diseases.

Authors:  Tejaswini Prakash; Nallur B Ramachandra
Journal:  Avicenna J Med Biotechnol       Date:  2021 Jan-Mar

8.  Systematically characterizing and prioritizing chemosensitivity related gene based on Gene Ontology and protein interaction network.

Authors:  Xin Chen; Wei Jiang; Qianghu Wang; Teng Huang; Peng Wang; Yan Li; Xiaowen Chen; Yingli Lv; Xia Li
Journal:  BMC Med Genomics       Date:  2012-10-02       Impact factor: 3.063

9.  Network analysis of inflammatory genes and their transcriptional regulators in coronary artery disease.

Authors:  Jiny Nair; Madankumar Ghatge; Vijay V Kakkar; Jayashree Shanker
Journal:  PLoS One       Date:  2014-04-15       Impact factor: 3.240

10.  Identification of novel therapeutics for complex diseases from genome-wide association data.

Authors:  Mani P Grover; Sara Ballouz; Kaavya A Mohanasundaram; Richard A George; Craig D H Sherman; Tamsyn M Crowley; Merridee A Wouters
Journal:  BMC Med Genomics       Date:  2014-05-08       Impact factor: 3.063

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