Literature DB >> 21203913

Human gut microbiome: the second genome of human body.

Baoli Zhu1, Xin Wang, Lanjuan Li.   

Abstract

The human body is actually a super-organism that is composed of 10 times more microbial cells than our body cells. Metagenomic study of the human microbiome has demonstrated that there are 3.3 million unique genes in human gut, 150 times more genes than our own genome, and the bacterial diversity analysis showed that about 1000 bacterial species are living in our gut and a majority of them belongs to the divisions of Firmicutes and Bacteriodetes. In addition, most people share a core microbiota that comprises 50-100 bacterial species when the frequency of abundance at phylotype level is not considered, and a core microbiome harboring more than 6000 functional gene groups is present in the majority of human gut surveyed till now. Gut bacteria are not only critical for regulating gut metabolism, but also important for host immune system as revealed by animal studies.

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Mesh:

Year:  2010        PMID: 21203913      PMCID: PMC4875195          DOI: 10.1007/s13238-010-0093-z

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  46 in total

1.  In a map for human life, count the microbes, too.

Authors:  J Davies
Journal:  Science       Date:  2001-03-23       Impact factor: 47.728

Review 2.  Metagenomics: application of genomics to uncultured microorganisms.

Authors:  Jo Handelsman
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

3.  Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species.

Authors:  D Nichols; N Cahoon; E M Trakhtenberg; L Pham; A Mehta; A Belanger; T Kanigan; K Lewis; S S Epstein
Journal:  Appl Environ Microbiol       Date:  2010-02-19       Impact factor: 4.792

4.  Studies on the effect of system retention time on bacterial populations colonizing a three-stage continuous culture model of the human large gut using FISH techniques.

Authors:  Matthew W Child; Aileen Kennedy; Alan W Walker; Bahram Bahrami; Sandra Macfarlane; George T Macfarlane
Journal:  FEMS Microbiol Ecol       Date:  2006-02       Impact factor: 4.194

5.  Metagenomic analysis of the human distal gut microbiome.

Authors:  Steven R Gill; Mihai Pop; Robert T Deboy; Paul B Eckburg; Peter J Turnbaugh; Buck S Samuel; Jeffrey I Gordon; David A Relman; Claire M Fraser-Liggett; Karen E Nelson
Journal:  Science       Date:  2006-06-02       Impact factor: 47.728

6.  Comparison of fermentation reactions in different regions of the human colon.

Authors:  G T Macfarlane; G R Gibson; J H Cummings
Journal:  J Appl Bacteriol       Date:  1992-01

7.  Towards the human intestinal microbiota phylogenetic core.

Authors:  Julien Tap; Stanislas Mondot; Florence Levenez; Eric Pelletier; Christophe Caron; Jean-Pierre Furet; Edgardo Ugarte; Rafael Muñoz-Tamayo; Denis L E Paslier; Renaud Nalin; Joel Dore; Marion Leclerc
Journal:  Environ Microbiol       Date:  2009-07-06       Impact factor: 5.491

8.  Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis.

Authors:  X Wang; S P Heazlewood; D O Krause; T H J Florin
Journal:  J Appl Microbiol       Date:  2003       Impact factor: 3.772

9.  Hollow-fiber membrane chamber as a device for in situ environmental cultivation.

Authors:  Yoshiteru Aoi; Tomoyuki Kinoshita; Toru Hata; Hiroaki Ohta; Haruko Obokata; Satoshi Tsuneda
Journal:  Appl Environ Microbiol       Date:  2009-03-27       Impact factor: 4.792

10.  Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.

Authors:  Ken Kurokawa; Takehiko Itoh; Tomomi Kuwahara; Kenshiro Oshima; Hidehiro Toh; Atsushi Toyoda; Hideto Takami; Hidetoshi Morita; Vineet K Sharma; Tulika P Srivastava; Todd D Taylor; Hideki Noguchi; Hiroshi Mori; Yoshitoshi Ogura; Dusko S Ehrlich; Kikuji Itoh; Toshihisa Takagi; Yoshiyuki Sakaki; Tetsuya Hayashi; Masahira Hattori
Journal:  DNA Res       Date:  2007-10-03       Impact factor: 4.458

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  86 in total

1.  Assessment of the human faecal microbiota: I. Measurement and reproducibility of selected enzymatic activities.

Authors:  Roberto Flores; Jianxin Shi; Mitchell H Gail; Jacques Ravel; James J Goedert
Journal:  Eur J Clin Invest       Date:  2012-03-13       Impact factor: 4.686

Review 2.  Maternal Microbiome and Pregnancy Outcomes That Impact Infant Health: A Review.

Authors:  Anne L Dunlop; Jennifer G Mulle; Erin P Ferranti; Sara Edwards; Alexis B Dunn; Elizabeth J Corwin
Journal:  Adv Neonatal Care       Date:  2015-12       Impact factor: 1.968

3.  Arsenic exposure and toxicology: a historical perspective.

Authors:  Michael F Hughes; Barbara D Beck; Yu Chen; Ari S Lewis; David J Thomas
Journal:  Toxicol Sci       Date:  2011-07-12       Impact factor: 4.849

4.  Complete genome sequence of acetate-producing Klebsiella pneumoniae L5-2 isolated from infant feces.

Authors:  Yong-Soo Park; Jisu Kang; Jung-Hoon Yoon; Dong-Ho Seo; Won-Hyong Chung; Mi Young Lim; Myung-Ji Seo; Young-Do Nam
Journal:  3 Biotech       Date:  2019-02-15       Impact factor: 2.406

5.  Bacterial components plus vitamin D: the ultimate solution to the asthma (autoimmune disease) epidemic?

Authors:  Scott T Weiss
Journal:  J Allergy Clin Immunol       Date:  2011-03-16       Impact factor: 10.793

6.  Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences.

Authors:  Roberto Flores; Jianxin Shi; Mitchell H Gail; Pawel Gajer; Jacques Ravel; James J Goedert
Journal:  Eur J Clin Invest       Date:  2012-03-03       Impact factor: 4.686

7.  A concurrent subtractive assembly approach for identification of disease associated sub-metagenomes.

Authors:  Wontack Han; Mingjie Wang; Yuzhen Ye
Journal:  Res Comput Mol Biol       Date:  2017-04-12

Review 8.  The Interactions between Polyphenols and Microorganisms, Especially Gut Microbiota.

Authors:  Małgorzata Makarewicz; Iwona Drożdż; Tomasz Tarko; Aleksandra Duda-Chodak
Journal:  Antioxidants (Basel)       Date:  2021-01-28

Review 9.  The impact of Helicobacter pylori infection on gut microbiota-endocrine system axis; modulation of metabolic hormone levels and energy homeostasis.

Authors:  Samaneh Ostad Mohammadi; Abbas Yadegar; Mohammad Kargar; Hamed Mirjalali; Farshid Kafilzadeh
Journal:  J Diabetes Metab Disord       Date:  2020-08-11

Review 10.  Natural products from anaerobes.

Authors:  Jeffrey S Li; Colin Charles Barber; Wenjun Zhang
Journal:  J Ind Microbiol Biotechnol       Date:  2018-10-03       Impact factor: 3.346

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