Literature DB >> 21203323

6-(4-Pyrid-yl)-3-(3,4,5-trimethoxy-phen-yl)-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Hai-Tang Du, Hai-Jun Du.   

Abstract

In the mol-ecule of the title compound, C(17)H(15)N(5)O(3)S, the planar central heterocylic ring system is oriented at dihedral angles of 5.32 (4) and 9.41 (4)°, respectively with respect to trimethoxy-phenyl and pyridine rings. Intra-molecular C-H⋯N, C-H⋯O and C-H⋯S hydrogen bonds result in the formation of a nearly planar six-membered ring, which is oriented at a dihedral angle of 3.07 (5)° with respect to the central heterocylic ring system, and non-planar six- and five-membered rings having twist and envelope conformations, respectively. In the crystal structure, inter-molecular C-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules. There is a C-H⋯π contact between the pyridine ring and a methyl group and a π-π contact between the central heterocylic ring system and the trimethoxy-phenyl ring [centroid-centroid distance = 3.758 (1) Å].

Entities:  

Year:  2008        PMID: 21203323      PMCID: PMC2962241          DOI: 10.1107/S1600536808023544

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Karabasanagouda et al. (2007 ▶); Mathew et al. (2007 ▶). For ring conformation puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C17H15N5O3S M = 369.40 Triclinic, a = 7.7051 (15) Å b = 8.6684 (17) Å c = 13.851 (3) Å α = 105.00 (3)° β = 104.18 (3)° γ = 96.58 (3)° V = 850.6 (4) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 113 (2) K 0.22 × 0.20 × 0.12 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.953, T max = 0.974 4917 measured reflections 2970 independent reflections 2467 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.100 S = 1.09 2970 reflections 238 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808023544/hk2505sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023544/hk2505Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15N5O3SZ = 2
Mr = 369.40F000 = 384
Triclinic, P1Dx = 1.442 Mg m3
Hall symbol: -P 1Melting point: 447 K
a = 7.7051 (15) ÅMo Kα radiation λ = 0.71073 Å
b = 8.6684 (17) ÅCell parameters from 2198 reflections
c = 13.851 (3) Åθ = 2.5–27.5º
α = 105.00 (3)ºµ = 0.22 mm1
β = 104.18 (3)ºT = 113 (2) K
γ = 96.58 (3)ºPrism, colorless
V = 850.6 (4) Å30.22 × 0.20 × 0.12 mm
Rigaku Saturn CCD area-detector diffractometer2970 independent reflections
Radiation source: rotating anode2467 reflections with I > 2σ(I)
Monochromator: confocalRint = 0.021
T = 113(2) Kθmax = 25.0º
ω scansθmin = 1.6º
Absorption correction: multi-scan(CrystalClear; Rigaku/MSC, 2005)h = −9→8
Tmin = 0.953, Tmax = 0.974k = −5→10
4917 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.100  w = 1/[σ2(Fo2) + (0.0666P)2] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2970 reflectionsΔρmax = 0.33 e Å3
238 parametersΔρmin = −0.41 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.12462 (5)1.42520 (5)0.15970 (3)0.01718 (15)
O10.42347 (15)0.65186 (14)−0.05689 (9)0.0207 (3)
O20.38351 (15)0.55944 (14)−0.26365 (10)0.0221 (3)
O30.22791 (16)0.72787 (15)−0.38536 (9)0.0237 (3)
N10.06954 (17)1.22162 (16)−0.13378 (11)0.0173 (3)
N20.04356 (18)1.35552 (17)−0.06135 (11)0.0174 (3)
N30.16107 (16)1.18786 (16)0.01937 (10)0.0137 (3)
N40.22454 (17)1.14340 (16)0.10761 (11)0.0153 (3)
N50.3721 (2)1.2020 (2)0.49150 (12)0.0271 (4)
C10.2006 (2)0.9733 (2)−0.13125 (13)0.0154 (4)
C20.2800 (2)0.8834 (2)−0.06844 (13)0.0153 (4)
H20.29200.91570.00270.018*
C30.3410 (2)0.7454 (2)−0.11299 (13)0.0159 (4)
C40.3211 (2)0.6951 (2)−0.21931 (14)0.0172 (4)
C50.2417 (2)0.7869 (2)−0.28176 (13)0.0183 (4)
C60.1823 (2)0.9264 (2)−0.23794 (13)0.0176 (4)
H60.13080.9879−0.27930.021*
C70.4203 (2)0.6867 (2)0.04955 (13)0.0197 (4)
H7A0.48660.79480.08790.030*
H7B0.47570.61000.07980.030*
H7C0.29630.67860.05220.030*
C80.2630 (3)0.4101 (2)−0.27988 (15)0.0273 (4)
H8A0.24300.4057−0.21480.041*
H8B0.31680.3198−0.30670.041*
H8C0.14880.4049−0.32900.041*
C90.1605 (3)0.8243 (2)−0.45012 (15)0.0285 (4)
H9A0.03700.8318−0.45060.043*
H9B0.16440.7747−0.51990.043*
H9C0.23470.9313−0.42350.043*
C100.1416 (2)1.1222 (2)−0.08494 (13)0.0145 (3)
C110.1006 (2)1.33163 (19)0.03000 (13)0.0151 (4)
C120.2130 (2)1.2572 (2)0.18640 (13)0.0156 (4)
C130.2677 (2)1.2409 (2)0.29190 (13)0.0163 (4)
C140.2786 (2)1.3663 (2)0.37991 (14)0.0225 (4)
H140.25101.46570.37380.027*
C150.3307 (2)1.3421 (2)0.47678 (15)0.0265 (4)
H150.33761.42760.53510.032*
C160.3604 (2)1.0826 (2)0.40556 (14)0.0242 (4)
H160.38910.98460.41380.029*
C170.3089 (2)1.0943 (2)0.30574 (14)0.0212 (4)
H170.30171.00630.24880.025*
U11U22U33U12U13U23
S10.0206 (2)0.0148 (2)0.0170 (2)0.00664 (17)0.00523 (17)0.00510 (18)
O10.0273 (6)0.0190 (7)0.0201 (7)0.0131 (5)0.0084 (5)0.0081 (5)
O20.0265 (6)0.0152 (6)0.0284 (7)0.0078 (5)0.0154 (5)0.0040 (6)
O30.0328 (7)0.0239 (7)0.0151 (6)0.0079 (5)0.0091 (5)0.0039 (6)
N10.0198 (7)0.0153 (7)0.0182 (8)0.0056 (6)0.0056 (6)0.0064 (6)
N20.0213 (7)0.0153 (7)0.0172 (8)0.0069 (6)0.0057 (6)0.0057 (6)
N30.0149 (7)0.0117 (7)0.0155 (7)0.0040 (5)0.0037 (5)0.0055 (6)
N40.0161 (7)0.0168 (7)0.0148 (7)0.0047 (6)0.0039 (5)0.0077 (6)
N50.0300 (8)0.0316 (9)0.0211 (9)0.0062 (7)0.0071 (7)0.0105 (8)
C10.0126 (8)0.0155 (9)0.0177 (9)0.0019 (6)0.0043 (6)0.0048 (7)
C20.0151 (8)0.0146 (8)0.0161 (9)0.0027 (6)0.0048 (6)0.0039 (7)
C30.0127 (8)0.0150 (9)0.0206 (9)0.0033 (6)0.0045 (6)0.0064 (7)
C40.0164 (8)0.0128 (8)0.0229 (9)0.0025 (7)0.0089 (7)0.0030 (7)
C50.0169 (8)0.0203 (9)0.0169 (9)0.0006 (7)0.0061 (7)0.0040 (8)
C60.0164 (8)0.0181 (9)0.0193 (9)0.0048 (7)0.0041 (7)0.0074 (8)
C70.0232 (9)0.0184 (9)0.0204 (9)0.0080 (7)0.0050 (7)0.0097 (8)
C80.0395 (11)0.0180 (9)0.0270 (10)0.0051 (8)0.0160 (8)0.0050 (8)
C90.0341 (10)0.0347 (11)0.0181 (10)0.0075 (9)0.0088 (8)0.0088 (9)
C100.0130 (7)0.0151 (8)0.0150 (8)0.0003 (6)0.0034 (6)0.0052 (7)
C110.0131 (8)0.0122 (8)0.0212 (9)0.0042 (6)0.0059 (7)0.0055 (7)
C120.0127 (8)0.0147 (8)0.0197 (9)0.0027 (6)0.0040 (6)0.0057 (7)
C130.0124 (8)0.0203 (9)0.0166 (9)0.0026 (7)0.0036 (6)0.0069 (7)
C140.0272 (9)0.0187 (9)0.0218 (10)0.0048 (8)0.0083 (7)0.0050 (8)
C150.0314 (10)0.0268 (11)0.0191 (10)0.0016 (8)0.0086 (8)0.0035 (8)
C160.0273 (9)0.0259 (10)0.0227 (10)0.0085 (8)0.0070 (7)0.0114 (8)
C170.0224 (9)0.0214 (9)0.0203 (9)0.0076 (7)0.0047 (7)0.0070 (8)
S1—C111.7226 (18)C3—C41.387 (2)
S1—C121.7615 (17)C4—C51.402 (2)
O1—C31.3664 (19)C5—C61.387 (2)
O1—C71.433 (2)C6—H60.9300
O2—C41.376 (2)C7—H7A0.9600
O2—C81.435 (2)C7—H7B0.9600
O3—C51.366 (2)C7—H7C0.9600
O3—C91.426 (2)C8—H8A0.9600
N1—C101.317 (2)C8—H8B0.9600
N1—N21.394 (2)C8—H8C0.9600
N2—C111.312 (2)C9—H9A0.9600
N3—C111.365 (2)C9—H9B0.9600
N3—N41.3694 (18)C9—H9C0.9600
N3—C101.372 (2)C12—C131.467 (2)
N4—C121.297 (2)C13—C141.385 (2)
N5—C161.336 (2)C13—C171.393 (2)
N5—C151.343 (2)C14—C151.381 (2)
C1—C21.392 (2)C14—H140.9300
C1—C61.394 (2)C15—H150.9300
C1—C101.460 (2)C16—C171.376 (2)
C2—C31.387 (2)C16—H160.9300
C2—H20.9300C17—H170.9300
C11—S1—C1287.35 (8)O2—C8—H8B109.5
C3—O1—C7116.86 (13)H8A—C8—H8B109.5
C4—O2—C8113.05 (12)O2—C8—H8C109.5
C5—O3—C9116.86 (14)H8A—C8—H8C109.5
C10—N1—N2109.38 (13)H8B—C8—H8C109.5
C11—N2—N1106.05 (13)O3—C9—H9A109.5
C11—N3—N4117.95 (14)O3—C9—H9B109.5
C11—N3—C10106.53 (13)H9A—C9—H9B109.5
N4—N3—C10135.51 (13)O3—C9—H9C109.5
C12—N4—N3107.80 (13)H9A—C9—H9C109.5
C16—N5—C15116.09 (16)H9B—C9—H9C109.5
C2—C1—C6120.81 (15)N1—C10—N3107.71 (14)
C2—C1—C10120.03 (15)N1—C10—C1126.81 (15)
C6—C1—C10119.11 (15)N3—C10—C1125.40 (14)
C3—C2—C1119.36 (16)N2—C11—N3110.32 (15)
C3—C2—H2120.3N2—C11—S1139.95 (13)
C1—C2—H2120.3N3—C11—S1109.73 (12)
O1—C3—C2123.22 (15)N4—C12—C13120.08 (15)
O1—C3—C4116.10 (14)N4—C12—S1117.15 (12)
C2—C3—C4120.68 (15)C13—C12—S1122.75 (13)
O2—C4—C3120.89 (15)C14—C13—C17117.81 (16)
O2—C4—C5119.60 (15)C14—C13—C12122.40 (16)
C3—C4—C5119.48 (15)C17—C13—C12119.78 (16)
O3—C5—C6124.38 (15)C15—C14—C13119.24 (17)
O3—C5—C4115.23 (15)C15—C14—H14120.4
C6—C5—C4120.39 (15)C13—C14—H14120.4
C5—C6—C1119.26 (15)N5—C15—C14123.67 (18)
C5—C6—H6120.4N5—C15—H15118.2
C1—C6—H6120.4C14—C15—H15118.2
O1—C7—H7A109.5N5—C16—C17124.66 (17)
O1—C7—H7B109.5N5—C16—H16117.7
H7A—C7—H7B109.5C17—C16—H16117.7
O1—C7—H7C109.5C16—C17—C13118.51 (18)
H7A—C7—H7C109.5C16—C17—H17120.7
H7B—C7—H7C109.5C13—C17—H17120.7
O2—C8—H8A109.5
C10—N1—N2—C11−0.40 (17)N4—N3—C10—C1−3.7 (3)
C11—N3—N4—C12−0.60 (19)C2—C1—C10—N1177.96 (15)
C10—N3—N4—C12178.75 (15)C6—C1—C10—N10.3 (2)
C6—C1—C2—C3−0.1 (2)C2—C1—C10—N31.7 (2)
C10—C1—C2—C3−177.80 (14)C6—C1—C10—N3−176.04 (13)
C7—O1—C3—C29.6 (2)N1—N2—C11—N3−0.34 (17)
C7—O1—C3—C4−170.70 (13)N1—N2—C11—S1179.14 (15)
C1—C2—C3—O1178.75 (13)N4—N3—C11—N2−179.55 (12)
C1—C2—C3—C4−1.0 (2)C10—N3—C11—N20.92 (17)
C8—O2—C4—C379.22 (19)N4—N3—C11—S10.80 (17)
C8—O2—C4—C5−102.87 (18)C10—N3—C11—S1−178.73 (9)
O1—C3—C4—O2−0.6 (2)C12—S1—C11—N2179.97 (19)
C2—C3—C4—O2179.15 (14)C12—S1—C11—N3−0.55 (11)
O1—C3—C4—C5−178.51 (14)N3—N4—C12—C13178.53 (13)
C2—C3—C4—C51.2 (2)N3—N4—C12—S10.12 (16)
C9—O3—C5—C65.0 (2)C11—S1—C12—N40.26 (13)
C9—O3—C5—C4−175.42 (14)C11—S1—C12—C13−178.10 (13)
O2—C4—C5—O32.1 (2)N4—C12—C13—C14172.23 (15)
C3—C4—C5—O3180.00 (13)S1—C12—C13—C14−9.5 (2)
O2—C4—C5—C6−178.33 (14)N4—C12—C13—C17−8.5 (2)
C3—C4—C5—C6−0.4 (2)S1—C12—C13—C17169.79 (12)
O3—C5—C6—C1178.88 (14)C17—C13—C14—C150.6 (2)
C4—C5—C6—C1−0.7 (2)C12—C13—C14—C15179.86 (14)
C2—C1—C6—C51.0 (2)C16—N5—C15—C140.0 (3)
C10—C1—C6—C5178.66 (14)C13—C14—C15—N5−0.1 (3)
N2—N1—C10—N30.96 (17)C15—N5—C16—C17−0.4 (3)
N2—N1—C10—C1−175.87 (14)N5—C16—C17—C130.8 (3)
C11—N3—C10—N1−1.14 (17)C14—C13—C17—C16−0.9 (2)
N4—N3—C10—N1179.45 (15)C12—C13—C17—C16179.80 (14)
C11—N3—C10—C1175.75 (14)
D—H···AD—HH···AD···AD—H···A
C2—H2···N40.932.323.016 (3)131
C7—H7B···O1i0.962.453.313 (3)149
C8—H8A···O10.962.593.106 (3)114
C8—H8A···N1ii0.962.603.409 (3)142
C14—H14···S10.932.803.185 (3)106
C9—H9A···Cg3iii0.963.073.974 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯N40.932.323.016 (3)131
C7—H7B⋯O1i0.962.453.313 (3)149
C8—H8A⋯O10.962.593.106 (3)114
C8—H8A⋯N1ii0.962.603.409 (3)142
C14—H14⋯S10.932.803.185 (3)106
C9—H9ACg3iii0.963.073.974 (3)157

Symmetry codes: (i) ; (ii) ; (iii) . Cg3 is the centroid of the N5/C13–C17 pyridine ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Studies on synthesis and pharmacological activities of 3,6-disubstituted-1,2,4-triazolo[3,4-b]-1,3,4-thiadiazoles and their dihydro analogues.

Authors:  Vinod Mathew; J Keshavayya; V P Vaidya; D Giles
Journal:  Eur J Med Chem       Date:  2007-01-09       Impact factor: 6.514

3.  Synthesis and antimicrobial activities of some novel 1,2,4-triazolo[3,4-b]-1,3,4-thiadiazoles and 1,2,4-triazolo[3,4-b]-1,3,4-thiadiazines carrying thioalkyl and sulphonyl phenoxy moieties.

Authors:  T Karabasanagouda; Airody Vasudeva Adhikari; N Suchetha Shetty
Journal:  Eur J Med Chem       Date:  2006-12-06       Impact factor: 6.514

  3 in total
  1 in total

1.  Structural and Energetic Properties of Weak Noncovalent Interactions in Two Closely Related 3,6-Disubstituted-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazole Derivatives: In Vitro Cyclooxygenase Activity, Crystallography, and Computational Investigations.

Authors:  Lamya H Al-Wahaibi; Sekar Karthikeyan; Olivier Blacque; Amal A El-Masry; Hanan M Hassan; M Judith Percino; Ali A El-Emam; Subbiah Thamotharan
Journal:  ACS Omega       Date:  2022-09-16
  1 in total

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