| Literature DB >> 21203323 |
Abstract
In the mol-ecule of the title compound, C(17)H(15)N(5)O(3)S, the planar central heterocylic ring system is oriented at dihedral angles of 5.32 (4) and 9.41 (4)°, respectively with respect to trimethoxy-phenyl and pyridine rings. Intra-molecular C-H⋯N, C-H⋯O and C-H⋯S hydrogen bonds result in the formation of a nearly planar six-membered ring, which is oriented at a dihedral angle of 3.07 (5)° with respect to the central heterocylic ring system, and non-planar six- and five-membered rings having twist and envelope conformations, respectively. In the crystal structure, inter-molecular C-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules. There is a C-H⋯π contact between the pyridine ring and a methyl group and a π-π contact between the central heterocylic ring system and the trimethoxy-phenyl ring [centroid-centroid distance = 3.758 (1) Å].Entities:
Year: 2008 PMID: 21203323 PMCID: PMC2962241 DOI: 10.1107/S1600536808023544
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H15N5O3S | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 447 K |
| Mo | |
| Cell parameters from 2198 reflections | |
| θ = 2.5–27.5º | |
| α = 105.00 (3)º | µ = 0.22 mm−1 |
| β = 104.18 (3)º | |
| γ = 96.58 (3)º | Prism, colorless |
| 0.22 × 0.20 × 0.12 mm |
| Rigaku Saturn CCD area-detector diffractometer | 2970 independent reflections |
| Radiation source: rotating anode | 2467 reflections with |
| Monochromator: confocal | |
| θmax = 25.0º | |
| ω scans | θmin = 1.6º |
| Absorption correction: multi-scan(CrystalClear; Rigaku/MSC, 2005) | |
| 4917 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 2970 reflections | Δρmax = 0.33 e Å−3 |
| 238 parameters | Δρmin = −0.41 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.12462 (5) | 1.42520 (5) | 0.15970 (3) | 0.01718 (15) | |
| O1 | 0.42347 (15) | 0.65186 (14) | −0.05689 (9) | 0.0207 (3) | |
| O2 | 0.38351 (15) | 0.55944 (14) | −0.26365 (10) | 0.0221 (3) | |
| O3 | 0.22791 (16) | 0.72787 (15) | −0.38536 (9) | 0.0237 (3) | |
| N1 | 0.06954 (17) | 1.22162 (16) | −0.13378 (11) | 0.0173 (3) | |
| N2 | 0.04356 (18) | 1.35552 (17) | −0.06135 (11) | 0.0174 (3) | |
| N3 | 0.16107 (16) | 1.18786 (16) | 0.01937 (10) | 0.0137 (3) | |
| N4 | 0.22454 (17) | 1.14340 (16) | 0.10761 (11) | 0.0153 (3) | |
| N5 | 0.3721 (2) | 1.2020 (2) | 0.49150 (12) | 0.0271 (4) | |
| C1 | 0.2006 (2) | 0.9733 (2) | −0.13125 (13) | 0.0154 (4) | |
| C2 | 0.2800 (2) | 0.8834 (2) | −0.06844 (13) | 0.0153 (4) | |
| H2 | 0.2920 | 0.9157 | 0.0027 | 0.018* | |
| C3 | 0.3410 (2) | 0.7454 (2) | −0.11299 (13) | 0.0159 (4) | |
| C4 | 0.3211 (2) | 0.6951 (2) | −0.21931 (14) | 0.0172 (4) | |
| C5 | 0.2417 (2) | 0.7869 (2) | −0.28176 (13) | 0.0183 (4) | |
| C6 | 0.1823 (2) | 0.9264 (2) | −0.23794 (13) | 0.0176 (4) | |
| H6 | 0.1308 | 0.9879 | −0.2793 | 0.021* | |
| C7 | 0.4203 (2) | 0.6867 (2) | 0.04955 (13) | 0.0197 (4) | |
| H7A | 0.4866 | 0.7948 | 0.0879 | 0.030* | |
| H7B | 0.4757 | 0.6100 | 0.0798 | 0.030* | |
| H7C | 0.2963 | 0.6786 | 0.0522 | 0.030* | |
| C8 | 0.2630 (3) | 0.4101 (2) | −0.27988 (15) | 0.0273 (4) | |
| H8A | 0.2430 | 0.4057 | −0.2148 | 0.041* | |
| H8B | 0.3168 | 0.3198 | −0.3067 | 0.041* | |
| H8C | 0.1488 | 0.4049 | −0.3290 | 0.041* | |
| C9 | 0.1605 (3) | 0.8243 (2) | −0.45012 (15) | 0.0285 (4) | |
| H9A | 0.0370 | 0.8318 | −0.4506 | 0.043* | |
| H9B | 0.1644 | 0.7747 | −0.5199 | 0.043* | |
| H9C | 0.2347 | 0.9313 | −0.4235 | 0.043* | |
| C10 | 0.1416 (2) | 1.1222 (2) | −0.08494 (13) | 0.0145 (3) | |
| C11 | 0.1006 (2) | 1.33163 (19) | 0.03000 (13) | 0.0151 (4) | |
| C12 | 0.2130 (2) | 1.2572 (2) | 0.18640 (13) | 0.0156 (4) | |
| C13 | 0.2677 (2) | 1.2409 (2) | 0.29190 (13) | 0.0163 (4) | |
| C14 | 0.2786 (2) | 1.3663 (2) | 0.37991 (14) | 0.0225 (4) | |
| H14 | 0.2510 | 1.4657 | 0.3738 | 0.027* | |
| C15 | 0.3307 (2) | 1.3421 (2) | 0.47678 (15) | 0.0265 (4) | |
| H15 | 0.3376 | 1.4276 | 0.5351 | 0.032* | |
| C16 | 0.3604 (2) | 1.0826 (2) | 0.40556 (14) | 0.0242 (4) | |
| H16 | 0.3891 | 0.9846 | 0.4138 | 0.029* | |
| C17 | 0.3089 (2) | 1.0943 (2) | 0.30574 (14) | 0.0212 (4) | |
| H17 | 0.3017 | 1.0063 | 0.2488 | 0.025* |
| S1 | 0.0206 (2) | 0.0148 (2) | 0.0170 (2) | 0.00664 (17) | 0.00523 (17) | 0.00510 (18) |
| O1 | 0.0273 (6) | 0.0190 (7) | 0.0201 (7) | 0.0131 (5) | 0.0084 (5) | 0.0081 (5) |
| O2 | 0.0265 (6) | 0.0152 (6) | 0.0284 (7) | 0.0078 (5) | 0.0154 (5) | 0.0040 (6) |
| O3 | 0.0328 (7) | 0.0239 (7) | 0.0151 (6) | 0.0079 (5) | 0.0091 (5) | 0.0039 (6) |
| N1 | 0.0198 (7) | 0.0153 (7) | 0.0182 (8) | 0.0056 (6) | 0.0056 (6) | 0.0064 (6) |
| N2 | 0.0213 (7) | 0.0153 (7) | 0.0172 (8) | 0.0069 (6) | 0.0057 (6) | 0.0057 (6) |
| N3 | 0.0149 (7) | 0.0117 (7) | 0.0155 (7) | 0.0040 (5) | 0.0037 (5) | 0.0055 (6) |
| N4 | 0.0161 (7) | 0.0168 (7) | 0.0148 (7) | 0.0047 (6) | 0.0039 (5) | 0.0077 (6) |
| N5 | 0.0300 (8) | 0.0316 (9) | 0.0211 (9) | 0.0062 (7) | 0.0071 (7) | 0.0105 (8) |
| C1 | 0.0126 (8) | 0.0155 (9) | 0.0177 (9) | 0.0019 (6) | 0.0043 (6) | 0.0048 (7) |
| C2 | 0.0151 (8) | 0.0146 (8) | 0.0161 (9) | 0.0027 (6) | 0.0048 (6) | 0.0039 (7) |
| C3 | 0.0127 (8) | 0.0150 (9) | 0.0206 (9) | 0.0033 (6) | 0.0045 (6) | 0.0064 (7) |
| C4 | 0.0164 (8) | 0.0128 (8) | 0.0229 (9) | 0.0025 (7) | 0.0089 (7) | 0.0030 (7) |
| C5 | 0.0169 (8) | 0.0203 (9) | 0.0169 (9) | 0.0006 (7) | 0.0061 (7) | 0.0040 (8) |
| C6 | 0.0164 (8) | 0.0181 (9) | 0.0193 (9) | 0.0048 (7) | 0.0041 (7) | 0.0074 (8) |
| C7 | 0.0232 (9) | 0.0184 (9) | 0.0204 (9) | 0.0080 (7) | 0.0050 (7) | 0.0097 (8) |
| C8 | 0.0395 (11) | 0.0180 (9) | 0.0270 (10) | 0.0051 (8) | 0.0160 (8) | 0.0050 (8) |
| C9 | 0.0341 (10) | 0.0347 (11) | 0.0181 (10) | 0.0075 (9) | 0.0088 (8) | 0.0088 (9) |
| C10 | 0.0130 (7) | 0.0151 (8) | 0.0150 (8) | 0.0003 (6) | 0.0034 (6) | 0.0052 (7) |
| C11 | 0.0131 (8) | 0.0122 (8) | 0.0212 (9) | 0.0042 (6) | 0.0059 (7) | 0.0055 (7) |
| C12 | 0.0127 (8) | 0.0147 (8) | 0.0197 (9) | 0.0027 (6) | 0.0040 (6) | 0.0057 (7) |
| C13 | 0.0124 (8) | 0.0203 (9) | 0.0166 (9) | 0.0026 (7) | 0.0036 (6) | 0.0069 (7) |
| C14 | 0.0272 (9) | 0.0187 (9) | 0.0218 (10) | 0.0048 (8) | 0.0083 (7) | 0.0050 (8) |
| C15 | 0.0314 (10) | 0.0268 (11) | 0.0191 (10) | 0.0016 (8) | 0.0086 (8) | 0.0035 (8) |
| C16 | 0.0273 (9) | 0.0259 (10) | 0.0227 (10) | 0.0085 (8) | 0.0070 (7) | 0.0114 (8) |
| C17 | 0.0224 (9) | 0.0214 (9) | 0.0203 (9) | 0.0076 (7) | 0.0047 (7) | 0.0070 (8) |
| S1—C11 | 1.7226 (18) | C3—C4 | 1.387 (2) |
| S1—C12 | 1.7615 (17) | C4—C5 | 1.402 (2) |
| O1—C3 | 1.3664 (19) | C5—C6 | 1.387 (2) |
| O1—C7 | 1.433 (2) | C6—H6 | 0.9300 |
| O2—C4 | 1.376 (2) | C7—H7A | 0.9600 |
| O2—C8 | 1.435 (2) | C7—H7B | 0.9600 |
| O3—C5 | 1.366 (2) | C7—H7C | 0.9600 |
| O3—C9 | 1.426 (2) | C8—H8A | 0.9600 |
| N1—C10 | 1.317 (2) | C8—H8B | 0.9600 |
| N1—N2 | 1.394 (2) | C8—H8C | 0.9600 |
| N2—C11 | 1.312 (2) | C9—H9A | 0.9600 |
| N3—C11 | 1.365 (2) | C9—H9B | 0.9600 |
| N3—N4 | 1.3694 (18) | C9—H9C | 0.9600 |
| N3—C10 | 1.372 (2) | C12—C13 | 1.467 (2) |
| N4—C12 | 1.297 (2) | C13—C14 | 1.385 (2) |
| N5—C16 | 1.336 (2) | C13—C17 | 1.393 (2) |
| N5—C15 | 1.343 (2) | C14—C15 | 1.381 (2) |
| C1—C2 | 1.392 (2) | C14—H14 | 0.9300 |
| C1—C6 | 1.394 (2) | C15—H15 | 0.9300 |
| C1—C10 | 1.460 (2) | C16—C17 | 1.376 (2) |
| C2—C3 | 1.387 (2) | C16—H16 | 0.9300 |
| C2—H2 | 0.9300 | C17—H17 | 0.9300 |
| C11—S1—C12 | 87.35 (8) | O2—C8—H8B | 109.5 |
| C3—O1—C7 | 116.86 (13) | H8A—C8—H8B | 109.5 |
| C4—O2—C8 | 113.05 (12) | O2—C8—H8C | 109.5 |
| C5—O3—C9 | 116.86 (14) | H8A—C8—H8C | 109.5 |
| C10—N1—N2 | 109.38 (13) | H8B—C8—H8C | 109.5 |
| C11—N2—N1 | 106.05 (13) | O3—C9—H9A | 109.5 |
| C11—N3—N4 | 117.95 (14) | O3—C9—H9B | 109.5 |
| C11—N3—C10 | 106.53 (13) | H9A—C9—H9B | 109.5 |
| N4—N3—C10 | 135.51 (13) | O3—C9—H9C | 109.5 |
| C12—N4—N3 | 107.80 (13) | H9A—C9—H9C | 109.5 |
| C16—N5—C15 | 116.09 (16) | H9B—C9—H9C | 109.5 |
| C2—C1—C6 | 120.81 (15) | N1—C10—N3 | 107.71 (14) |
| C2—C1—C10 | 120.03 (15) | N1—C10—C1 | 126.81 (15) |
| C6—C1—C10 | 119.11 (15) | N3—C10—C1 | 125.40 (14) |
| C3—C2—C1 | 119.36 (16) | N2—C11—N3 | 110.32 (15) |
| C3—C2—H2 | 120.3 | N2—C11—S1 | 139.95 (13) |
| C1—C2—H2 | 120.3 | N3—C11—S1 | 109.73 (12) |
| O1—C3—C2 | 123.22 (15) | N4—C12—C13 | 120.08 (15) |
| O1—C3—C4 | 116.10 (14) | N4—C12—S1 | 117.15 (12) |
| C2—C3—C4 | 120.68 (15) | C13—C12—S1 | 122.75 (13) |
| O2—C4—C3 | 120.89 (15) | C14—C13—C17 | 117.81 (16) |
| O2—C4—C5 | 119.60 (15) | C14—C13—C12 | 122.40 (16) |
| C3—C4—C5 | 119.48 (15) | C17—C13—C12 | 119.78 (16) |
| O3—C5—C6 | 124.38 (15) | C15—C14—C13 | 119.24 (17) |
| O3—C5—C4 | 115.23 (15) | C15—C14—H14 | 120.4 |
| C6—C5—C4 | 120.39 (15) | C13—C14—H14 | 120.4 |
| C5—C6—C1 | 119.26 (15) | N5—C15—C14 | 123.67 (18) |
| C5—C6—H6 | 120.4 | N5—C15—H15 | 118.2 |
| C1—C6—H6 | 120.4 | C14—C15—H15 | 118.2 |
| O1—C7—H7A | 109.5 | N5—C16—C17 | 124.66 (17) |
| O1—C7—H7B | 109.5 | N5—C16—H16 | 117.7 |
| H7A—C7—H7B | 109.5 | C17—C16—H16 | 117.7 |
| O1—C7—H7C | 109.5 | C16—C17—C13 | 118.51 (18) |
| H7A—C7—H7C | 109.5 | C16—C17—H17 | 120.7 |
| H7B—C7—H7C | 109.5 | C13—C17—H17 | 120.7 |
| O2—C8—H8A | 109.5 | ||
| C10—N1—N2—C11 | −0.40 (17) | N4—N3—C10—C1 | −3.7 (3) |
| C11—N3—N4—C12 | −0.60 (19) | C2—C1—C10—N1 | 177.96 (15) |
| C10—N3—N4—C12 | 178.75 (15) | C6—C1—C10—N1 | 0.3 (2) |
| C6—C1—C2—C3 | −0.1 (2) | C2—C1—C10—N3 | 1.7 (2) |
| C10—C1—C2—C3 | −177.80 (14) | C6—C1—C10—N3 | −176.04 (13) |
| C7—O1—C3—C2 | 9.6 (2) | N1—N2—C11—N3 | −0.34 (17) |
| C7—O1—C3—C4 | −170.70 (13) | N1—N2—C11—S1 | 179.14 (15) |
| C1—C2—C3—O1 | 178.75 (13) | N4—N3—C11—N2 | −179.55 (12) |
| C1—C2—C3—C4 | −1.0 (2) | C10—N3—C11—N2 | 0.92 (17) |
| C8—O2—C4—C3 | 79.22 (19) | N4—N3—C11—S1 | 0.80 (17) |
| C8—O2—C4—C5 | −102.87 (18) | C10—N3—C11—S1 | −178.73 (9) |
| O1—C3—C4—O2 | −0.6 (2) | C12—S1—C11—N2 | 179.97 (19) |
| C2—C3—C4—O2 | 179.15 (14) | C12—S1—C11—N3 | −0.55 (11) |
| O1—C3—C4—C5 | −178.51 (14) | N3—N4—C12—C13 | 178.53 (13) |
| C2—C3—C4—C5 | 1.2 (2) | N3—N4—C12—S1 | 0.12 (16) |
| C9—O3—C5—C6 | 5.0 (2) | C11—S1—C12—N4 | 0.26 (13) |
| C9—O3—C5—C4 | −175.42 (14) | C11—S1—C12—C13 | −178.10 (13) |
| O2—C4—C5—O3 | 2.1 (2) | N4—C12—C13—C14 | 172.23 (15) |
| C3—C4—C5—O3 | 180.00 (13) | S1—C12—C13—C14 | −9.5 (2) |
| O2—C4—C5—C6 | −178.33 (14) | N4—C12—C13—C17 | −8.5 (2) |
| C3—C4—C5—C6 | −0.4 (2) | S1—C12—C13—C17 | 169.79 (12) |
| O3—C5—C6—C1 | 178.88 (14) | C17—C13—C14—C15 | 0.6 (2) |
| C4—C5—C6—C1 | −0.7 (2) | C12—C13—C14—C15 | 179.86 (14) |
| C2—C1—C6—C5 | 1.0 (2) | C16—N5—C15—C14 | 0.0 (3) |
| C10—C1—C6—C5 | 178.66 (14) | C13—C14—C15—N5 | −0.1 (3) |
| N2—N1—C10—N3 | 0.96 (17) | C15—N5—C16—C17 | −0.4 (3) |
| N2—N1—C10—C1 | −175.87 (14) | N5—C16—C17—C13 | 0.8 (3) |
| C11—N3—C10—N1 | −1.14 (17) | C14—C13—C17—C16 | −0.9 (2) |
| N4—N3—C10—N1 | 179.45 (15) | C12—C13—C17—C16 | 179.80 (14) |
| C11—N3—C10—C1 | 175.75 (14) |
| H··· | ||||
| C2—H2···N4 | 0.93 | 2.32 | 3.016 (3) | 131 |
| C7—H7B···O1i | 0.96 | 2.45 | 3.313 (3) | 149 |
| C8—H8A···O1 | 0.96 | 2.59 | 3.106 (3) | 114 |
| C8—H8A···N1ii | 0.96 | 2.60 | 3.409 (3) | 142 |
| C14—H14···S1 | 0.93 | 2.80 | 3.185 (3) | 106 |
| C9—H9A···Cg3iii | 0.96 | 3.07 | 3.974 (3) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯N4 | 0.93 | 2.32 | 3.016 (3) | 131 |
| C7—H7 | 0.96 | 2.45 | 3.313 (3) | 149 |
| C8—H8 | 0.96 | 2.59 | 3.106 (3) | 114 |
| C8—H8 | 0.96 | 2.60 | 3.409 (3) | 142 |
| C14—H14⋯S1 | 0.93 | 2.80 | 3.185 (3) | 106 |
| C9—H9 | 0.96 | 3.07 | 3.974 (3) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg3 is the centroid of the N5/C13–C17 pyridine ring.