Literature DB >> 21203207

A new polymorph of N-(prop-2-yn-yl)tricyclo-[3.3.1.1]decane-1-carbox-amide.

Wolfgang Frey, Stefanie Schetter, Frank Rominger, A Stephen K Hashmi.   

Abstract

The alkynyl bond of the title compound, C(14)H(19)NO, has a length of 1.170 (5) Å. The amide function shows a trans conformation with respect to the carbonyl group characterized by the torsion angle O-C-N-H of -176 (2)°. There is an inter-molecular N-H⋯O hydrogen bond between the amide function and the carbonyl group. In addition, weak inter-molecular hydrogen bonds stabilize the crystal structure. A comparison with a polymorphic structure shows conformational differences with regard to the orientation of the carbonyl groups with respect to the adamantyl group [O-C-C-C = 96.2 (3)° in the title compound and 123.7 (2)° in the polymorph] and the orientations of the propargyl groups in relation to the carbonyl groups [O-C-C-C = -87.7 (3) and -58.7 (2)°, respectively].

Entities:  

Year:  2008        PMID: 21203207      PMCID: PMC2962125          DOI: 10.1107/S1600536808021466

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the monoclinic polymorph, see: Hashmi et al. (2004 ▶). For gold catalysis research, see: Hashmi (2003 ▶, 2004 ▶, 2005 ▶, 2007 ▶); Hashmi & Hutchings (2006 ▶); Hashmi, Frost & Bats (2000 ▶); Hashmi, Schwarz et al. (2000 ▶); Hashmi et al. (2006 ▶). For the synthesis of heterocyclic compounds, see: Milton et al. (2004 ▶).

Experimental

Crystal data

C14H19NO M = 217.30 Orthorhombic, a = 9.862 (2) Å b = 28.095 (5) Å c = 8.664 (3) Å V = 2400.4 (10) Å3 Z = 8 Mo Kα radiation μ = 0.07 mm−1 T = 293 (2) K 0.9 × 0.4 × 0.1 mm

Data collection

Nicolet P3 diffractometer Absorption correction: none 13418 measured reflections 1853 independent reflections 1442 reflections with I > 2σ(I) R int = 0.084 3 standard reflections every 50 reflections intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.130 S = 1.09 1853 reflections 150 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.14 e Å−3 Data collection: P3/PC Software (Siemens, 1991 ▶); cell refinement: P3/PC Software; data reduction: XDISK in SHELXTL-Plus (Sheldrick, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus; software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808021466/bt2731sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021466/bt2731Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H19NOF000 = 944
Mr = 217.30Dx = 1.203 Mg m3
Orthorhombic, Iba2Mo Kα radiation λ = 0.71073 Å
Hall symbol: I 2 -2cCell parameters from 32 reflections
a = 9.862 (2) Åθ = 9–13º
b = 28.095 (5) ŵ = 0.08 mm1
c = 8.664 (3) ÅT = 293 (2) K
V = 2400.4 (10) Å3Plates, colourless
Z = 80.9 × 0.4 × 0.1 mm
Nicolet P3 diffractometerRint = 0.084
Radiation source: fine-focus sealed tubeθmax = 30.0º
Monochromator: graphiteθmin = 2.2º
T = 293(2) Kh = −13→13
Wyckoff ccan scansk = −39→39
Absorption correction: nonel = −12→12
13418 measured reflections3 standard reflections
1853 independent reflections every 50 reflections
1442 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.130  w = 1/[σ2(Fo2) + (0.0432P)2 + 1.5609P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
1853 reflectionsΔρmax = 0.21 e Å3
150 parametersΔρmin = −0.14 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0008 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1418 (2)0.17494 (8)0.6152 (3)0.0516 (6)
N10.0006 (3)0.18653 (8)0.8136 (3)0.0417 (5)
H1A−0.023 (3)0.1792 (9)0.906 (4)0.030 (8)*
C10.1177 (4)0.29834 (13)0.8851 (6)0.0648 (11)
H10.17460.32040.93220.078*
C20.0462 (3)0.27061 (10)0.8258 (5)0.0471 (7)
C3−0.0418 (3)0.23362 (9)0.7609 (4)0.0466 (7)
H3A−0.13480.23940.79230.056*
H3B−0.03800.23490.64910.056*
C40.1019 (3)0.16321 (9)0.7436 (3)0.0362 (6)
C50.1706 (2)0.12334 (9)0.8342 (3)0.0321 (5)
C60.2719 (3)0.14739 (9)0.9446 (4)0.0408 (7)
H6A0.33460.16690.88580.049*
H6B0.22330.16801.01550.049*
C70.3511 (3)0.10992 (10)1.0360 (4)0.0454 (7)
H70.41570.12581.10490.055*
C80.2518 (3)0.08042 (11)1.1315 (4)0.0464 (7)
H8A0.30100.05701.19160.056*
H8B0.20280.10091.20210.056*
C90.1523 (3)0.05549 (9)1.0236 (4)0.0441 (7)
H90.08890.03631.08470.053*
C100.0723 (3)0.09276 (9)0.9302 (4)0.0413 (6)
H10A0.00870.07680.86220.050*
H10B0.02130.11300.99990.050*
C110.2495 (3)0.09040 (11)0.7245 (4)0.0482 (8)
H11A0.18680.07480.65460.058*
H11B0.31240.10910.66330.058*
C120.3275 (3)0.05301 (11)0.8169 (4)0.0524 (8)
H120.37730.03230.74580.063*
C130.2292 (3)0.02307 (10)0.9121 (5)0.0527 (8)
H13A0.2788−0.00090.96960.063*
H13B0.16570.00700.84430.063*
C140.4276 (3)0.07773 (12)0.9248 (5)0.0538 (8)
H14A0.47840.05410.98240.065*
H14B0.49130.09650.86490.065*
U11U22U33U12U13U23
O10.0513 (12)0.0591 (13)0.0445 (12)0.0059 (10)0.0039 (11)0.0162 (11)
N10.0433 (12)0.0404 (11)0.0415 (14)0.0062 (11)0.0031 (12)0.0088 (12)
C10.0506 (17)0.0527 (18)0.091 (3)0.0030 (16)−0.006 (2)−0.008 (2)
C20.0398 (14)0.0402 (14)0.061 (2)0.0096 (12)0.0003 (16)0.0059 (15)
C30.0440 (15)0.0423 (14)0.0533 (19)0.0089 (12)−0.0061 (15)0.0083 (14)
C40.0355 (13)0.0356 (12)0.0376 (15)−0.0056 (10)−0.0048 (12)0.0012 (12)
C50.0320 (12)0.0327 (12)0.0316 (14)−0.0013 (9)0.0006 (11)0.0011 (11)
C60.0393 (14)0.0337 (12)0.0495 (18)−0.0075 (11)−0.0055 (14)0.0026 (13)
C70.0413 (15)0.0443 (14)0.0507 (18)−0.0048 (12)−0.0143 (15)0.0036 (15)
C80.0570 (18)0.0448 (15)0.0375 (16)0.0059 (13)−0.0032 (15)0.0103 (14)
C90.0437 (15)0.0325 (12)0.056 (2)−0.0045 (11)0.0028 (14)0.0126 (14)
C100.0340 (12)0.0351 (12)0.0550 (18)−0.0039 (10)0.0027 (14)0.0066 (14)
C110.0561 (18)0.0492 (17)0.0393 (18)0.0108 (14)0.0026 (15)−0.0028 (13)
C120.0593 (19)0.0477 (16)0.050 (2)0.0201 (14)0.0100 (17)−0.0022 (16)
C130.0624 (19)0.0313 (13)0.065 (2)0.0051 (13)−0.0091 (19)−0.0010 (15)
C140.0365 (14)0.0611 (18)0.064 (2)0.0086 (13)0.0026 (16)0.0153 (19)
O1—C41.225 (4)C8—C91.525 (4)
N1—C41.340 (4)C8—H8A0.9700
N1—C31.461 (3)C8—H8B0.9700
N1—H1A0.86 (3)C9—C131.529 (5)
C1—C21.170 (5)C9—C101.541 (4)
C1—H10.9300C9—H90.9800
C2—C31.466 (4)C10—H10A0.9700
C3—H3A0.9700C10—H10B0.9700
C3—H3B0.9700C11—C121.529 (4)
C4—C51.526 (4)C11—H11A0.9700
C5—C111.538 (4)C11—H11B0.9700
C5—C101.539 (4)C12—C131.526 (5)
C5—C61.540 (4)C12—C141.527 (5)
C6—C71.531 (4)C12—H120.9800
C6—H6A0.9700C13—H13A0.9700
C6—H6B0.9700C13—H13B0.9700
C7—C141.521 (5)C14—H14A0.9700
C7—C81.527 (4)C14—H14B0.9700
C7—H70.9800
C4—N1—C3121.0 (3)H8A—C8—H8B108.3
C4—N1—H1A120.7 (19)C8—C9—C13110.0 (3)
C3—N1—H1A115.4 (19)C8—C9—C10109.8 (2)
C2—C1—H1180.0C13—C9—C10109.1 (3)
C1—C2—C3175.9 (4)C8—C9—H9109.3
N1—C3—C2110.7 (2)C13—C9—H9109.3
N1—C3—H3A109.5C10—C9—H9109.3
C2—C3—H3A109.5C5—C10—C9109.9 (2)
N1—C3—H3B109.5C5—C10—H10A109.7
C2—C3—H3B109.5C9—C10—H10A109.7
H3A—C3—H3B108.1C5—C10—H10B109.7
O1—C4—N1121.3 (3)C9—C10—H10B109.7
O1—C4—C5121.5 (3)H10A—C10—H10B108.2
N1—C4—C5117.2 (2)C12—C11—C5110.1 (3)
C4—C5—C11110.4 (2)C12—C11—H11A109.6
C4—C5—C10114.1 (2)C5—C11—H11A109.6
C11—C5—C10108.5 (2)C12—C11—H11B109.6
C4—C5—C6106.6 (2)C5—C11—H11B109.6
C11—C5—C6108.7 (2)H11A—C11—H11B108.1
C10—C5—C6108.5 (2)C13—C12—C11110.0 (3)
C7—C6—C5110.5 (2)C13—C12—C14109.3 (3)
C7—C6—H6A109.5C11—C12—C14109.5 (3)
C5—C6—H6A109.5C13—C12—H12109.3
C7—C6—H6B109.5C11—C12—H12109.3
C5—C6—H6B109.5C14—C12—H12109.3
H6A—C6—H6B108.1C12—C13—C9109.1 (2)
C14—C7—C8109.8 (2)C12—C13—H13A109.9
C14—C7—C6109.5 (3)C9—C13—H13A109.9
C8—C7—C6109.0 (2)C12—C13—H13B109.9
C14—C7—H7109.5C9—C13—H13B109.9
C8—C7—H7109.5H13A—C13—H13B108.3
C6—C7—H7109.5C7—C14—C12109.7 (2)
C9—C8—C7109.3 (3)C7—C14—H14A109.7
C9—C8—H8A109.8C12—C14—H14A109.7
C7—C8—H8A109.8C7—C14—H14B109.7
C9—C8—H8B109.8C12—C14—H14B109.7
C7—C8—H8B109.8H14A—C14—H14B108.2
C4—N1—C3—C2−82.6 (4)C8—C9—C10—C559.7 (3)
C3—N1—C4—O1−16.5 (4)C13—C9—C10—C5−60.9 (3)
C3—N1—C4—C5160.2 (3)C4—C5—C11—C12175.3 (3)
O1—C4—C5—C11−21.6 (4)C10—C5—C11—C12−59.0 (3)
N1—C4—C5—C11161.8 (3)C6—C5—C11—C1258.8 (3)
O1—C4—C5—C10−144.0 (3)C5—C11—C12—C1360.0 (4)
N1—C4—C5—C1039.4 (3)C5—C11—C12—C14−60.2 (3)
O1—C4—C5—C696.2 (3)C11—C12—C13—C9−60.3 (4)
N1—C4—C5—C6−80.4 (3)C14—C12—C13—C960.0 (3)
C4—C5—C6—C7−177.4 (2)C8—C9—C13—C12−60.1 (3)
C11—C5—C6—C7−58.4 (3)C10—C9—C13—C1260.4 (3)
C10—C5—C6—C759.3 (3)C8—C7—C14—C1259.9 (3)
C5—C6—C7—C1459.4 (3)C6—C7—C14—C12−59.8 (3)
C5—C6—C7—C8−60.8 (3)C13—C12—C14—C7−60.2 (3)
C14—C7—C8—C9−59.3 (3)C11—C12—C14—C760.4 (3)
C6—C7—C8—C960.7 (3)O1—C4—C3—C2−87.7 (3)
C7—C8—C9—C1359.5 (3)C4—N1—C3—C2−82.6 (4)
C7—C8—C9—C10−60.5 (3)O1—C4—N1—H1A−176 (2)
C4—C5—C10—C9−176.9 (2)H1A—N1—C3—C278 (2)
C11—C5—C10—C959.6 (3)O1—C4—C5—C696.2 (3)
C6—C5—C10—C9−58.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.86 (3)2.16 (4)2.984 (4)161 (3)
C1—H1···O1ii0.932.413.188 (5)141
C10—H10B···O1i0.972.573.515 (4)164
C3—H3A···X1iii0.972.933.833157
C3—H3B···X1iv0.972.933.813151
C6—H6A···X1v0.972.813.689151
Table 1

Hydrogen-bond geometry (Å, °)

X1 is the midpoint of the alkynyl bond.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.86 (3)2.16 (4)2.984 (4)161 (3)
C1—H1⋯O1ii0.932.413.188 (5)141
C10—H10B⋯O1i0.972.573.515 (4)164
C3—H3AX1iii0.972.933.833157
C3—H3BX1iv0.972.933.813151
C6—H6AX1v0.972.813.689151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A New Gold-Catalyzed C-C Bond Formation This work was supported by the Deutsche Forschungsgemeinschaft (Ha 1932/5-1, Ha 1932/6-1) and the Fonds der Chemischen Industrie. Gold salts were donated by Degussa-Hüls AG. A.S.K.H. is indebted to Prof. M. Göbel for laboratory space.

Authors: 
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Journal:  Chem Commun (Camb)       Date:  2004-10-13       Impact factor: 6.222

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Authors:  A Stephen K Hashmi; Jan P Weyrauch; Wolfgang Frey; Jan W Bats
Journal:  Org Lett       Date:  2004-11-11       Impact factor: 6.005

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