Literature DB >> 21203196

trans-4-(1-Naphth-yl)-2-oxo-1,3-oxazolidine-5-carboxylic acid.

Jiao-Yan Yang, Zhi-Hui Ming, Jing An, Qiu-Lin Hua, Liang-Qiu Lu.   

Abstract

The crystal structure of the title compound, C(14)H(11)NO(4), is influenced by N-H⋯O and O-H⋯O hydrogen bonds, linking mol-ecules into one-dimensional tapes running along the [010] direction.

Entities:  

Year:  2008        PMID: 21203196      PMCID: PMC2962114          DOI: 10.1107/S1600536808019132

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general backgroud regarding the title compound, see: Lu et al. (2008 ▶). For patterns in hydrogen bonding, see: Bernstein et al. (1995 ▶). For related literature, see: Barbachyn & Ford (2003 ▶); Evans (1982 ▶); Mukhtar & Wright (2005 ▶).

Experimental

Crystal data

C14H11NO4 M = 257.24 Orthorhombic, a = 8.7159 (17) Å b = 12.817 (3) Å c = 20.737 (4) Å V = 2316.6 (8) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 292 (2) K 0.47 × 0.38 × 0.35 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: none 12484 measured reflections 2266 independent reflections 2008 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.093 S = 1.04 2266 reflections 178 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019132/bg2191sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019132/bg2191Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11NO4F000 = 1072
Mr = 257.24Dx = 1.475 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5223 reflections
a = 8.7159 (17) Åθ = 2.8–28.9º
b = 12.817 (3) ŵ = 0.11 mm1
c = 20.737 (4) ÅT = 292 (2) K
V = 2316.6 (8) Å3Block, colorless
Z = 80.47 × 0.38 × 0.35 mm
Bruker SMART 4K CCD area-detector diffractometer2008 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.016
Monochromator: graphiteθmax = 26.0º
T = 292(2) Kθmin = 3.0º
φ and ω scansh = −9→10
Absorption correction: nonek = −15→15
12484 measured reflectionsl = −25→25
2266 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.093  w = 1/[σ2(Fo2) + (0.0416P)2 + 0.7823P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2266 reflectionsΔρmax = 0.19 e Å3
178 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.10060 (15)0.89669 (10)0.40612 (6)0.0322 (3)
C20.18399 (17)0.98662 (11)0.40013 (7)0.0415 (3)
H20.19711.01590.35950.050*
C30.25014 (19)1.03567 (11)0.45381 (7)0.0474 (4)
H30.30631.09670.44840.057*
C40.23264 (17)0.99464 (12)0.51357 (7)0.0438 (4)
H40.27641.02800.54890.053*
C50.14847 (15)0.90147 (11)0.52271 (6)0.0363 (3)
C60.13034 (17)0.85684 (12)0.58449 (7)0.0435 (4)
H60.17310.89000.62010.052*
C70.05170 (18)0.76650 (13)0.59291 (7)0.0468 (4)
H70.04240.73770.63390.056*
C8−0.01545 (17)0.71659 (12)0.53978 (7)0.0435 (3)
H8−0.06940.65480.54580.052*
C9−0.00239 (15)0.75784 (10)0.47936 (6)0.0359 (3)
H9−0.04900.72420.44480.043*
C100.08091 (14)0.85104 (10)0.46843 (6)0.0315 (3)
C110.03291 (15)0.84401 (10)0.34692 (6)0.0326 (3)
H11−0.06840.81490.35670.039*
C120.13968 (15)0.75872 (10)0.31821 (6)0.0356 (3)
H120.21500.73740.35070.043*
C130.13627 (16)0.89576 (10)0.24897 (7)0.0370 (3)
C140.05709 (17)0.66298 (10)0.29259 (6)0.0390 (3)
N10.02505 (13)0.91215 (9)0.29122 (5)0.0363 (3)
H1−0.0281 (18)0.9662 (13)0.2897 (7)0.044*
O1−0.01994 (14)0.61525 (9)0.33777 (5)0.0538 (3)
H1A−0.068 (3)0.5549 (17)0.3222 (10)0.081*
O20.0653 (2)0.63355 (10)0.23870 (5)0.0869 (5)
O30.21709 (11)0.80945 (7)0.26568 (5)0.0429 (3)
O40.17042 (13)0.94603 (8)0.20100 (5)0.0497 (3)
U11U22U33U12U13U23
C10.0341 (6)0.0298 (6)0.0328 (7)0.0010 (5)0.0002 (5)−0.0034 (5)
C20.0503 (8)0.0350 (7)0.0394 (7)−0.0056 (6)0.0002 (6)0.0012 (6)
C30.0529 (9)0.0346 (8)0.0545 (9)−0.0125 (6)−0.0010 (7)−0.0056 (6)
C40.0452 (8)0.0422 (8)0.0439 (8)−0.0054 (6)−0.0044 (6)−0.0138 (6)
C50.0358 (7)0.0378 (7)0.0353 (7)0.0037 (6)−0.0010 (5)−0.0071 (6)
C60.0452 (8)0.0538 (9)0.0316 (7)0.0033 (7)−0.0036 (6)−0.0071 (6)
C70.0544 (9)0.0542 (9)0.0319 (7)0.0063 (7)0.0019 (6)0.0065 (6)
C80.0505 (8)0.0383 (8)0.0415 (8)−0.0020 (6)0.0059 (6)0.0035 (6)
C90.0402 (7)0.0339 (7)0.0337 (7)−0.0017 (6)0.0008 (5)−0.0038 (5)
C100.0322 (6)0.0306 (6)0.0317 (6)0.0032 (5)0.0004 (5)−0.0042 (5)
C110.0363 (7)0.0314 (7)0.0302 (6)−0.0008 (5)−0.0008 (5)−0.0002 (5)
C120.0421 (7)0.0314 (7)0.0333 (7)0.0010 (6)0.0005 (6)0.0009 (5)
C130.0407 (7)0.0313 (7)0.0389 (7)0.0004 (6)0.0004 (6)0.0004 (6)
C140.0563 (9)0.0307 (7)0.0301 (7)−0.0004 (6)0.0037 (6)−0.0003 (5)
N10.0398 (6)0.0369 (6)0.0322 (6)0.0083 (5)0.0001 (5)0.0023 (5)
O10.0767 (8)0.0478 (6)0.0370 (6)−0.0233 (6)0.0127 (5)−0.0085 (5)
O20.1626 (15)0.0612 (8)0.0371 (6)−0.0509 (9)0.0266 (8)−0.0154 (6)
O30.0437 (5)0.0328 (5)0.0521 (6)0.0043 (4)0.0128 (5)0.0052 (4)
O40.0620 (7)0.0415 (6)0.0457 (6)0.0059 (5)0.0143 (5)0.0106 (5)
C1—C21.3682 (19)C8—H80.9300
C1—C101.4289 (17)C9—C101.4160 (18)
C1—C111.5202 (17)C9—H90.9300
C2—C31.403 (2)C11—N11.4497 (16)
C2—H20.9300C11—C121.5542 (18)
C3—C41.355 (2)C11—H110.9800
C3—H30.9300C12—O31.4368 (16)
C4—C51.414 (2)C12—C141.5185 (19)
C4—H40.9300C12—H120.9800
C5—C61.4117 (19)C13—O41.2220 (16)
C5—C101.4253 (18)C13—N11.3233 (18)
C6—C71.357 (2)C13—O31.3565 (16)
C6—H60.9300C14—O21.1817 (17)
C7—C81.402 (2)C14—O11.3049 (17)
C7—H70.9300N1—H10.834 (17)
C8—C91.3647 (19)O1—H1A0.94 (2)
C2—C1—C10119.40 (12)C9—C10—C5117.90 (12)
C2—C1—C11120.46 (12)C9—C10—C1123.49 (11)
C10—C1—C11120.12 (11)C5—C10—C1118.61 (12)
C1—C2—C3121.59 (13)N1—C11—C1113.21 (11)
C1—C2—H2119.2N1—C11—C1298.44 (10)
C3—C2—H2119.2C1—C11—C12112.92 (11)
C4—C3—C2120.38 (13)N1—C11—H11110.6
C4—C3—H3119.8C1—C11—H11110.6
C2—C3—H3119.8C12—C11—H11110.6
C3—C4—C5120.58 (13)O3—C12—C14108.85 (10)
C3—C4—H4119.7O3—C12—C11104.67 (10)
C5—C4—H4119.7C14—C12—C11114.74 (11)
C6—C5—C4121.45 (13)O3—C12—H12109.5
C6—C5—C10119.12 (13)C14—C12—H12109.5
C4—C5—C10119.43 (12)C11—C12—H12109.5
C7—C6—C5121.27 (13)O4—C13—N1129.31 (13)
C7—C6—H6119.4O4—C13—O3120.76 (12)
C5—C6—H6119.4N1—C13—O3109.92 (12)
C6—C7—C8119.93 (13)O2—C14—O1124.10 (14)
C6—C7—H7120.0O2—C14—C12124.05 (13)
C8—C7—H7120.0O1—C14—C12111.81 (11)
C9—C8—C7120.66 (14)C13—N1—C11113.40 (11)
C9—C8—H8119.7C13—N1—H1120.9 (11)
C7—C8—H8119.7C11—N1—H1123.9 (11)
C8—C9—C10121.10 (12)C14—O1—H1A111.7 (13)
C8—C9—H9119.5C13—O3—C12108.59 (10)
C10—C9—H9119.5
C10—C1—C2—C3−0.4 (2)C2—C1—C11—N1−17.73 (18)
C11—C1—C2—C3−178.76 (13)C10—C1—C11—N1163.91 (11)
C1—C2—C3—C40.0 (2)C2—C1—C11—C1293.05 (15)
C2—C3—C4—C50.4 (2)C10—C1—C11—C12−85.31 (14)
C3—C4—C5—C6179.30 (15)N1—C11—C12—O321.29 (12)
C3—C4—C5—C10−0.4 (2)C1—C11—C12—O3−98.41 (12)
C4—C5—C6—C7−178.87 (14)N1—C11—C12—C14−97.95 (12)
C10—C5—C6—C70.8 (2)C1—C11—C12—C14142.36 (11)
C5—C6—C7—C8−1.0 (2)O3—C12—C14—O24.2 (2)
C6—C7—C8—C90.1 (2)C11—C12—C14—O2121.12 (18)
C7—C8—C9—C100.9 (2)O3—C12—C14—O1−177.87 (12)
C8—C9—C10—C5−1.09 (19)C11—C12—C14—O1−61.00 (16)
C8—C9—C10—C1178.86 (13)O4—C13—N1—C11−171.98 (14)
C6—C5—C10—C90.22 (19)O3—C13—N1—C117.85 (16)
C4—C5—C10—C9179.92 (12)C1—C11—N1—C13101.23 (13)
C6—C5—C10—C1−179.73 (12)C12—C11—N1—C13−18.24 (14)
C4—C5—C10—C1−0.03 (19)O4—C13—O3—C12−172.25 (13)
C2—C1—C10—C9−179.53 (13)N1—C13—O3—C127.90 (15)
C11—C1—C10—C9−1.16 (19)C14—C12—O3—C13104.23 (12)
C2—C1—C10—C50.42 (19)C11—C12—O3—C13−18.91 (13)
C11—C1—C10—C5178.79 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O4i0.94 (2)1.72 (2)2.6591 (15)174 (2)
N1—H1···O2ii0.834 (17)2.247 (17)3.0097 (18)152.0 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O4i0.94 (2)1.72 (2)2.6591 (15)174 (2)
N1—H1⋯O2ii0.834 (17)2.247 (17)3.0097 (18)152.0 (15)

Symmetry codes: (i) ; (ii) .

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