| Literature DB >> 21203193 |
Haitang Du, Haijun Du, Ying An, Shengnan Li.
Abstract
In the mol-ecule of the title compound, C(19)H(18)N(4)O(3)S, the planar central heterocylic ring system is oriented with respect to the trimethoxy-phenyl and 2-methyl-phenyl rings at dihedral angles of 4.43 (3) and 4.32 (3)°, respectively. The dihedral angle between the two benzene rings is 7.65 (4)°. In the crystal structure, inter-molecular C-H⋯N hydrogen bonds link the mol-ecules into centrosymmetric R(2) (2)(18) dimers. These dimers are connected via a C-H⋯π contact between the 2-methyl-phenyl and trimethoxy-phenyl rings, and a π-π contact between the thia-diazole and trimethoxy-phenyl rings [interplanar distance 3.51 Å, dihedral angles 4.17(4)°]. An intramolecular C-H⋯N hydrogen bond is also present.Entities:
Year: 2008 PMID: 21203193 PMCID: PMC2962111 DOI: 10.1107/S160053680802062X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H18N4O3S | |
| Monoclinic, | Melting point: 435 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 4684 reflections | |
| θ = 1.9–27.9º | |
| µ = 0.22 mm−1 | |
| β = 91.88 (3)º | |
| Prism, colorless | |
| 0.24 × 0.20 × 0.16 mm |
| Rigaku Saturn CCD area-detector diffractometer | 3984 independent reflections |
| Radiation source: rotating anode | 3408 reflections with |
| Monochromator: confocal | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 27.9º |
| θmin = 1.9º | |
| ω and φ scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku/MSC, 2005) | |
| 11990 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.002 | |
| 3984 reflections | Δρmax = 0.39 e Å−3 |
| 248 parameters | Δρmin = −0.35 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.45611 (5) | 0.68554 (2) | 0.69693 (2) | 0.02005 (12) | |
| O1 | 0.04396 (14) | 0.40664 (6) | 0.30838 (7) | 0.0227 (2) | |
| O2 | 0.03955 (14) | 0.24866 (6) | 0.34593 (7) | 0.0223 (2) | |
| O3 | 0.17803 (14) | 0.18588 (6) | 0.51532 (7) | 0.0209 (2) | |
| N1 | 0.43365 (17) | 0.44321 (7) | 0.69492 (9) | 0.0208 (3) | |
| N2 | 0.48819 (18) | 0.51377 (8) | 0.74703 (9) | 0.0226 (3) | |
| N3 | 0.36258 (15) | 0.55345 (7) | 0.61030 (8) | 0.0156 (2) | |
| N4 | 0.31020 (15) | 0.61420 (7) | 0.54614 (8) | 0.0164 (2) | |
| C1 | 0.27851 (18) | 0.41101 (8) | 0.54193 (10) | 0.0162 (3) | |
| C2 | 0.20134 (19) | 0.44117 (8) | 0.45750 (10) | 0.0176 (3) | |
| H2 | 0.2018 | 0.4995 | 0.4439 | 0.021* | |
| C3 | 0.12374 (18) | 0.38475 (9) | 0.39346 (10) | 0.0173 (3) | |
| C4 | 0.12199 (18) | 0.29857 (8) | 0.41238 (10) | 0.0170 (3) | |
| C5 | 0.19617 (18) | 0.26966 (8) | 0.49906 (10) | 0.0169 (3) | |
| C6 | 0.27654 (18) | 0.32539 (8) | 0.56254 (10) | 0.0174 (3) | |
| H6 | 0.3303 | 0.3053 | 0.6201 | 0.021* | |
| C7 | 0.0480 (2) | 0.49299 (9) | 0.28278 (11) | 0.0232 (3) | |
| H7A | −0.0099 | 0.5263 | 0.3314 | 0.035* | |
| H7B | −0.0152 | 0.5009 | 0.2215 | 0.035* | |
| H7C | 0.1720 | 0.5112 | 0.2778 | 0.035* | |
| C8 | 0.1222 (2) | 0.17048 (9) | 0.32363 (12) | 0.0276 (4) | |
| H8A | 0.2513 | 0.1750 | 0.3349 | 0.041* | |
| H8B | 0.0968 | 0.1568 | 0.2568 | 0.041* | |
| H8C | 0.0751 | 0.1262 | 0.3639 | 0.041* | |
| C9 | 0.2468 (2) | 0.15402 (9) | 0.60340 (11) | 0.0247 (3) | |
| H9A | 0.3756 | 0.1639 | 0.6083 | 0.037* | |
| H9B | 0.2232 | 0.0937 | 0.6069 | 0.037* | |
| H9C | 0.1890 | 0.1826 | 0.6557 | 0.037* | |
| C10 | 0.35879 (18) | 0.46709 (8) | 0.61313 (10) | 0.0164 (3) | |
| C11 | 0.44294 (18) | 0.57788 (9) | 0.69380 (10) | 0.0182 (3) | |
| C12 | 0.35200 (18) | 0.68710 (8) | 0.58207 (9) | 0.0159 (3) | |
| C13 | 0.32100 (18) | 0.76838 (8) | 0.53561 (10) | 0.0167 (3) | |
| C14 | 0.3639 (2) | 0.84107 (9) | 0.58780 (11) | 0.0212 (3) | |
| H14 | 0.4101 | 0.8357 | 0.6510 | 0.025* | |
| C15 | 0.3405 (2) | 0.92022 (9) | 0.54955 (11) | 0.0240 (3) | |
| H15 | 0.3724 | 0.9686 | 0.5855 | 0.029* | |
| C16 | 0.2700 (2) | 0.92787 (9) | 0.45800 (11) | 0.0245 (3) | |
| H16 | 0.2521 | 0.9819 | 0.4309 | 0.029* | |
| C17 | 0.22563 (19) | 0.85687 (9) | 0.40588 (11) | 0.0210 (3) | |
| H17 | 0.1762 | 0.8634 | 0.3434 | 0.025* | |
| C18 | 0.25090 (18) | 0.77609 (9) | 0.44191 (10) | 0.0174 (3) | |
| C19 | 0.2042 (2) | 0.70232 (9) | 0.37935 (10) | 0.0206 (3) | |
| H19A | 0.1633 | 0.7224 | 0.3166 | 0.031* | |
| H19B | 0.1093 | 0.6697 | 0.4079 | 0.031* | |
| H19C | 0.3096 | 0.6669 | 0.3727 | 0.031* |
| S1 | 0.0259 (2) | 0.01750 (18) | 0.01647 (19) | −0.00076 (13) | −0.00384 (14) | −0.00149 (12) |
| O1 | 0.0347 (6) | 0.0148 (5) | 0.0181 (5) | 0.0021 (4) | −0.0071 (4) | 0.0011 (4) |
| O2 | 0.0258 (6) | 0.0165 (5) | 0.0242 (6) | 0.0014 (4) | −0.0056 (4) | −0.0036 (4) |
| O3 | 0.0278 (6) | 0.0142 (5) | 0.0203 (5) | −0.0019 (4) | −0.0035 (4) | 0.0032 (4) |
| N1 | 0.0244 (7) | 0.0189 (6) | 0.0190 (6) | 0.0012 (5) | −0.0023 (5) | −0.0002 (5) |
| N2 | 0.0287 (7) | 0.0196 (6) | 0.0193 (6) | 0.0012 (5) | −0.0038 (5) | −0.0006 (5) |
| N3 | 0.0173 (6) | 0.0158 (5) | 0.0136 (5) | 0.0000 (4) | −0.0010 (4) | 0.0005 (4) |
| N4 | 0.0182 (6) | 0.0149 (5) | 0.0160 (6) | 0.0005 (4) | −0.0002 (4) | 0.0024 (4) |
| C1 | 0.0154 (6) | 0.0170 (6) | 0.0164 (7) | 0.0007 (5) | 0.0026 (5) | −0.0006 (5) |
| C2 | 0.0202 (7) | 0.0150 (6) | 0.0177 (7) | 0.0015 (5) | 0.0012 (5) | −0.0004 (5) |
| C3 | 0.0200 (7) | 0.0179 (7) | 0.0140 (6) | 0.0031 (5) | 0.0005 (5) | 0.0003 (5) |
| C4 | 0.0171 (7) | 0.0155 (6) | 0.0184 (7) | −0.0001 (5) | 0.0003 (5) | −0.0022 (5) |
| C5 | 0.0167 (7) | 0.0142 (6) | 0.0199 (7) | 0.0010 (5) | 0.0034 (5) | 0.0014 (5) |
| C6 | 0.0168 (7) | 0.0190 (7) | 0.0165 (7) | 0.0019 (5) | 0.0005 (5) | 0.0020 (5) |
| C7 | 0.0316 (8) | 0.0161 (7) | 0.0217 (7) | 0.0028 (6) | −0.0042 (6) | 0.0037 (5) |
| C8 | 0.0387 (9) | 0.0170 (7) | 0.0265 (8) | 0.0034 (6) | −0.0065 (7) | −0.0061 (6) |
| C9 | 0.0335 (9) | 0.0177 (7) | 0.0227 (8) | −0.0002 (6) | −0.0037 (6) | 0.0058 (6) |
| C10 | 0.0169 (7) | 0.0146 (6) | 0.0177 (7) | 0.0008 (5) | 0.0016 (5) | 0.0014 (5) |
| C11 | 0.0196 (7) | 0.0196 (6) | 0.0154 (7) | −0.0006 (5) | −0.0010 (5) | −0.0013 (5) |
| C12 | 0.0147 (6) | 0.0180 (7) | 0.0149 (7) | −0.0003 (5) | 0.0002 (5) | −0.0013 (5) |
| C13 | 0.0161 (7) | 0.0163 (6) | 0.0176 (7) | 0.0005 (5) | 0.0006 (5) | 0.0000 (5) |
| C14 | 0.0233 (7) | 0.0198 (7) | 0.0204 (7) | 0.0001 (6) | −0.0018 (6) | −0.0023 (6) |
| C15 | 0.0287 (8) | 0.0161 (6) | 0.0271 (8) | −0.0007 (6) | −0.0012 (6) | −0.0030 (6) |
| C16 | 0.0297 (8) | 0.0168 (7) | 0.0270 (8) | 0.0013 (6) | 0.0005 (6) | 0.0025 (6) |
| C17 | 0.0218 (7) | 0.0216 (7) | 0.0198 (7) | 0.0011 (6) | 0.0004 (5) | 0.0019 (5) |
| C18 | 0.0163 (7) | 0.0190 (7) | 0.0169 (7) | 0.0004 (5) | 0.0015 (5) | 0.0003 (5) |
| C19 | 0.0245 (8) | 0.0200 (7) | 0.0172 (7) | −0.0012 (6) | −0.0015 (5) | −0.0009 (5) |
| S1—C11 | 1.7205 (15) | C7—H7A | 0.9800 |
| S1—C12 | 1.7749 (15) | C7—H7B | 0.9800 |
| O1—C3 | 1.3682 (17) | C7—H7C | 0.9800 |
| O1—C7 | 1.4244 (16) | C8—H8A | 0.9800 |
| O2—C4 | 1.3625 (16) | C8—H8B | 0.9800 |
| O2—C8 | 1.4325 (17) | C8—H8C | 0.9800 |
| O3—C5 | 1.3633 (16) | C9—H9A | 0.9800 |
| O3—C9 | 1.4229 (17) | C9—H9B | 0.9800 |
| N1—C10 | 1.3221 (18) | C9—H9C | 0.9800 |
| N1—N2 | 1.3978 (17) | C12—C13 | 1.4677 (19) |
| N2—C11 | 1.3067 (18) | C13—C14 | 1.4048 (19) |
| N3—C11 | 1.3619 (18) | C13—C18 | 1.411 (2) |
| N3—N4 | 1.3742 (16) | C14—C15 | 1.382 (2) |
| N3—C10 | 1.3783 (17) | C14—H14 | 0.9500 |
| N4—C12 | 1.3026 (17) | C15—C16 | 1.384 (2) |
| C1—C2 | 1.392 (2) | C15—H15 | 0.9500 |
| C1—C6 | 1.3964 (19) | C16—C17 | 1.385 (2) |
| C1—C10 | 1.4600 (19) | C16—H16 | 0.9500 |
| C2—C3 | 1.3893 (19) | C17—C18 | 1.3956 (19) |
| C2—H2 | 0.9500 | C17—H17 | 0.9500 |
| C3—C4 | 1.4003 (19) | C18—C19 | 1.5050 (19) |
| C4—C5 | 1.404 (2) | C19—H19A | 0.9800 |
| C5—C6 | 1.3855 (19) | C19—H19B | 0.9800 |
| C6—H6 | 0.9500 | C19—H19C | 0.9800 |
| C11—S1—C12 | 88.13 (6) | O3—C9—H9A | 109.5 |
| C3—O1—C7 | 117.15 (11) | O3—C9—H9B | 109.5 |
| C4—O2—C8 | 117.97 (11) | H9A—C9—H9B | 109.5 |
| C5—O3—C9 | 117.47 (11) | O3—C9—H9C | 109.5 |
| C10—N1—N2 | 109.59 (11) | H9A—C9—H9C | 109.5 |
| C11—N2—N1 | 105.19 (12) | H9B—C9—H9C | 109.5 |
| C11—N3—N4 | 118.44 (11) | N1—C10—N3 | 107.73 (12) |
| C11—N3—C10 | 105.66 (11) | N1—C10—C1 | 125.26 (12) |
| N4—N3—C10 | 135.89 (12) | N3—C10—C1 | 126.93 (12) |
| C12—N4—N3 | 108.26 (11) | N2—C11—N3 | 111.83 (13) |
| C2—C1—C6 | 120.59 (13) | N2—C11—S1 | 138.82 (11) |
| C2—C1—C10 | 121.79 (12) | N3—C11—S1 | 109.35 (10) |
| C6—C1—C10 | 117.59 (12) | N4—C12—C13 | 125.61 (13) |
| C3—C2—C1 | 119.05 (13) | N4—C12—S1 | 115.82 (10) |
| C3—C2—H2 | 120.5 | C13—C12—S1 | 118.57 (10) |
| C1—C2—H2 | 120.5 | C14—C13—C18 | 119.37 (13) |
| O1—C3—C2 | 124.52 (12) | C14—C13—C12 | 117.71 (13) |
| O1—C3—C4 | 114.26 (12) | C18—C13—C12 | 122.93 (12) |
| C2—C3—C4 | 121.23 (13) | C15—C14—C13 | 121.71 (14) |
| O2—C4—C3 | 116.72 (12) | C15—C14—H14 | 119.1 |
| O2—C4—C5 | 124.38 (12) | C13—C14—H14 | 119.1 |
| C3—C4—C5 | 118.83 (12) | C14—C15—C16 | 118.96 (14) |
| O3—C5—C6 | 124.34 (13) | C14—C15—H15 | 120.5 |
| O3—C5—C4 | 115.42 (12) | C16—C15—H15 | 120.5 |
| C6—C5—C4 | 120.22 (12) | C15—C16—C17 | 120.04 (14) |
| C5—C6—C1 | 120.03 (13) | C15—C16—H16 | 120.0 |
| C5—C6—H6 | 120.0 | C17—C16—H16 | 120.0 |
| C1—C6—H6 | 120.0 | C16—C17—C18 | 122.30 (14) |
| O1—C7—H7A | 109.5 | C16—C17—H17 | 118.8 |
| O1—C7—H7B | 109.5 | C18—C17—H17 | 118.8 |
| H7A—C7—H7B | 109.5 | C17—C18—C13 | 117.60 (13) |
| O1—C7—H7C | 109.5 | C17—C18—C19 | 118.83 (13) |
| H7A—C7—H7C | 109.5 | C13—C18—C19 | 123.57 (12) |
| H7B—C7—H7C | 109.5 | C18—C19—H19A | 109.5 |
| O2—C8—H8A | 109.5 | C18—C19—H19B | 109.5 |
| O2—C8—H8B | 109.5 | H19A—C19—H19B | 109.5 |
| H8A—C8—H8B | 109.5 | C18—C19—H19C | 109.5 |
| O2—C8—H8C | 109.5 | H19A—C19—H19C | 109.5 |
| H8A—C8—H8C | 109.5 | H19B—C19—H19C | 109.5 |
| H8B—C8—H8C | 109.5 | ||
| C10—N1—N2—C11 | 0.13 (16) | C2—C1—C10—N1 | 179.68 (13) |
| C11—N3—N4—C12 | −0.04 (16) | C6—C1—C10—N1 | 1.6 (2) |
| C10—N3—N4—C12 | −178.51 (15) | C2—C1—C10—N3 | 3.3 (2) |
| C6—C1—C2—C3 | −0.6 (2) | C6—C1—C10—N3 | −174.73 (13) |
| C10—C1—C2—C3 | −178.64 (13) | N1—N2—C11—N3 | −0.07 (16) |
| C7—O1—C3—C2 | 2.7 (2) | N1—N2—C11—S1 | −179.34 (13) |
| C7—O1—C3—C4 | −177.29 (12) | N4—N3—C11—N2 | −178.90 (12) |
| C1—C2—C3—O1 | −179.99 (13) | C10—N3—C11—N2 | −0.01 (16) |
| C1—C2—C3—C4 | 0.0 (2) | N4—N3—C11—S1 | 0.58 (15) |
| C8—O2—C4—C3 | 138.95 (14) | C10—N3—C11—S1 | 179.48 (9) |
| C8—O2—C4—C5 | −44.2 (2) | C12—S1—C11—N2 | 178.60 (18) |
| O1—C3—C4—O2 | −1.28 (18) | C12—S1—C11—N3 | −0.68 (10) |
| C2—C3—C4—O2 | 178.74 (12) | N3—N4—C12—C13 | 179.15 (12) |
| O1—C3—C4—C5 | −178.28 (12) | N3—N4—C12—S1 | −0.53 (14) |
| C2—C3—C4—C5 | 1.7 (2) | C11—S1—C12—N4 | 0.74 (11) |
| C9—O3—C5—C6 | −0.1 (2) | C11—S1—C12—C13 | −178.97 (11) |
| C9—O3—C5—C4 | −178.32 (12) | N4—C12—C13—C14 | 175.74 (13) |
| O2—C4—C5—O3 | −1.3 (2) | S1—C12—C13—C14 | −4.59 (17) |
| C3—C4—C5—O3 | 175.43 (12) | N4—C12—C13—C18 | −4.3 (2) |
| O2—C4—C5—C6 | −179.60 (13) | S1—C12—C13—C18 | 175.39 (11) |
| C3—C4—C5—C6 | −2.9 (2) | C18—C13—C14—C15 | −0.5 (2) |
| O3—C5—C6—C1 | −175.88 (13) | C12—C13—C14—C15 | 179.46 (13) |
| C4—C5—C6—C1 | 2.2 (2) | C13—C14—C15—C16 | 1.2 (2) |
| C2—C1—C6—C5 | −0.5 (2) | C14—C15—C16—C17 | −0.6 (2) |
| C10—C1—C6—C5 | 177.61 (12) | C15—C16—C17—C18 | −0.7 (2) |
| N2—N1—C10—N3 | −0.13 (15) | C16—C17—C18—C13 | 1.3 (2) |
| N2—N1—C10—C1 | −177.07 (12) | C16—C17—C18—C19 | −178.14 (14) |
| C11—N3—C10—N1 | 0.09 (15) | C14—C13—C18—C17 | −0.7 (2) |
| N4—N3—C10—N1 | 178.69 (14) | C12—C13—C18—C17 | 179.32 (13) |
| C11—N3—C10—C1 | 176.96 (13) | C14—C13—C18—C19 | 178.70 (13) |
| N4—N3—C10—C1 | −4.4 (3) | C12—C13—C18—C19 | −1.3 (2) |
| H··· | ||||
| C2—H2···N4 | 0.95 | 2.45 | 3.127 (3) | 128 |
| C7—H7C···N2i | 0.98 | 2.62 | 3.524 (3) | 154 |
| C19—H19B···CgAii | 0.98 | 2.90 | 3.808 (3) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯N4 | 0.95 | 2.45 | 3.127 (3) | 128 |
| C7—H7 | 0.98 | 2.62 | 3.524 (3) | 154 |
| C19—H19 | 0.98 | 2.90 | 3.808 (3) | 155 |
Symmetry codes: (i) ; (ii) . CgA is the centroid of the trimethoxyphenyl ring.