Literature DB >> 21203174

(S)-1-Methoxy-carbonyl-2-(4-nitro-phen-yl)ethanaminium chloride.

Xiao-Chun Wen1.   

Abstract

The title compound, C(10)H(13)N(2)O(4) (+)·Cl(-), comprises a Cl(-) anion and a protonated aminium cation. The crystal packing is stabilized by cation-anion N-H⋯Cl hydrogen bonds and N-H⋯O hydrogen bonds, building an infinite two-dimensional network parallel to the (001) plane. The S absolute configuration at the chiral center was deduced from the synthetic pathway and confirmed by the X-ray analysis.

Entities:  

Year:  2008        PMID: 21203174      PMCID: PMC2962090          DOI: 10.1107/S1600536808020874

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of α-amino acid derivatives as precursors for the synthesis of novel biologically active compounds, see: Lucchese et al. (2007 ▶); Arki et al. (2004 ▶); Hauck et al. (2006 ▶); Dai et al. (2008 ▶); Azim et al. (2006 ▶).

Experimental

Crystal data

C10H13N2O4 +·Cl− M = 260.67 Monoclinic, a = 4.825 (3) Å b = 8.426 (3) Å c = 15.111 (9) Å β = 95.64 (4)° V = 611.4 (6) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 298 (2) K 0.25 × 0.18 × 0.17 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.931, T max = 0.942 6215 measured reflections 2751 independent reflections 2077 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.112 S = 1.03 2751 reflections 154 parameters 1 restraint H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 1259 Friedel pairs Flack parameter: −0.03 (9) Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808020874/dn2364sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808020874/dn2364Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13N2O4+·ClF000 = 272
Mr = 260.67Dx = 1.416 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1445 reflections
a = 4.825 (3) Åθ = 2.4–27.5º
b = 8.426 (3) ŵ = 0.32 mm1
c = 15.111 (9) ÅT = 298 (2) K
β = 95.64 (4)ºBlock, colourless
V = 611.4 (6) Å30.25 × 0.18 × 0.17 mm
Z = 2
Rigaku Mercury2 diffractometer2751 independent reflections
Radiation source: fine-focus sealed tube2077 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.038
Detector resolution: 13.6612 pixels mm-1θmax = 27.4º
T = 298(2) Kθmin = 2.7º
ω scansh = −6→6
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.931, Tmax = 0.942l = −19→19
6215 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.048  w = 1/[σ2(Fo2) + (0.0476P)2 + 0.0855P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.112(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.30 e Å3
2751 reflectionsΔρmin = −0.17 e Å3
154 parametersExtinction correction: none
1 restraintAbsolute structure: Flack (1983), 1259 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.03 (9)
Secondary atom site location: difference Fourier map
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.98552 (15)0.75535 (11)0.54873 (5)0.0499 (2)
O30.8079 (4)0.7690 (3)0.30131 (12)0.0483 (5)
C90.6109 (5)0.7495 (4)0.35535 (16)0.0362 (6)
O40.4684 (5)0.8525 (3)0.38126 (14)0.0498 (6)
C80.5762 (6)0.5766 (3)0.37686 (18)0.0353 (6)
H8A0.75840.52430.38030.042*
N20.4629 (6)0.5646 (3)0.46458 (15)0.0448 (6)
H11A0.57880.61200.50580.067*
H11B0.44470.46290.47870.067*
H11C0.29730.61190.46170.067*
C40.4967 (6)0.4821 (4)0.21766 (19)0.0400 (7)
C70.3780 (7)0.4943 (4)0.3058 (2)0.0439 (7)
H7A0.33690.38850.32620.053*
H7B0.20440.55300.29800.053*
C10.7171 (8)0.4557 (4)0.0577 (2)0.0493 (8)
C20.8081 (8)0.3560 (5)0.1245 (2)0.0576 (9)
H2C0.94400.28050.11650.069*
C30.6962 (7)0.3682 (4)0.2046 (2)0.0512 (8)
H3A0.75510.29910.25060.061*
C50.4107 (7)0.5812 (4)0.1485 (2)0.0530 (9)
H5A0.27610.65760.15610.064*
C60.5198 (8)0.5697 (5)0.0674 (2)0.0612 (10)
H6A0.46090.63750.02070.073*
N10.8330 (9)0.4439 (5)−0.0288 (2)0.0722 (10)
O11.0166 (8)0.3463 (5)−0.0366 (2)0.1027 (12)
O20.7365 (9)0.5296 (5)−0.0890 (2)0.1057 (12)
C100.8487 (10)0.9318 (4)0.2717 (3)0.0691 (11)
H10A0.99510.93400.23310.104*
H10B0.89840.99830.32240.104*
H10C0.67940.97020.24020.104*
U11U22U33U12U13U23
Cl10.0520 (4)0.0476 (4)0.0505 (4)0.0037 (4)0.0075 (3)−0.0092 (4)
O30.0588 (12)0.0420 (12)0.0475 (11)−0.0084 (12)0.0217 (10)0.0009 (12)
C90.0410 (14)0.0359 (14)0.0315 (12)−0.0017 (16)0.0027 (11)−0.0029 (15)
O40.0582 (14)0.0403 (12)0.0521 (13)0.0093 (11)0.0123 (11)0.0021 (11)
C80.0429 (16)0.0342 (15)0.0303 (14)0.0008 (13)0.0109 (12)0.0018 (12)
N20.0599 (17)0.0372 (14)0.0390 (14)−0.0001 (13)0.0135 (12)0.0005 (12)
C40.0466 (17)0.0353 (15)0.0389 (16)−0.0111 (13)0.0074 (14)−0.0071 (13)
C70.0428 (17)0.0444 (18)0.0460 (17)−0.0076 (14)0.0114 (14)−0.0031 (15)
C10.058 (2)0.056 (2)0.0364 (17)−0.0125 (17)0.0129 (15)−0.0138 (15)
C20.060 (2)0.062 (2)0.052 (2)0.0040 (19)0.0099 (17)−0.0160 (19)
C30.067 (2)0.0434 (18)0.0431 (18)−0.0007 (17)0.0073 (16)−0.0024 (15)
C50.060 (2)0.053 (2)0.0465 (19)0.0070 (17)0.0083 (16)0.0000 (17)
C60.078 (3)0.064 (2)0.0403 (19)−0.006 (2)0.0023 (18)0.0038 (18)
N10.085 (3)0.089 (3)0.0451 (19)−0.023 (2)0.0180 (17)−0.021 (2)
O10.094 (2)0.141 (3)0.078 (2)0.008 (2)0.0345 (19)−0.035 (2)
O20.155 (3)0.121 (3)0.0465 (16)−0.005 (3)0.0353 (19)0.0011 (19)
C100.090 (3)0.052 (2)0.068 (2)−0.011 (2)0.022 (2)0.013 (2)
O3—C91.323 (3)C1—C21.353 (5)
O3—C101.462 (4)C1—C61.371 (5)
C9—O41.196 (4)C1—N11.475 (4)
C9—C81.506 (4)C2—C31.377 (4)
C8—N21.486 (3)C2—H2C0.9300
C8—C71.532 (4)C3—H3A0.9300
C8—H8A0.9800C5—C61.384 (5)
N2—H11A0.8900C5—H5A0.9300
N2—H11B0.8900C6—H6A0.9300
N2—H11C0.8900N1—O21.217 (5)
C4—C51.370 (4)N1—O11.223 (5)
C4—C31.387 (5)C10—H10A0.9600
C4—C71.505 (4)C10—H10B0.9600
C7—H7A0.9700C10—H10C0.9600
C7—H7B0.9700
C9—O3—C10115.6 (3)C2—C1—C6122.2 (3)
O4—C9—O3125.7 (3)C2—C1—N1119.8 (4)
O4—C9—C8123.5 (3)C6—C1—N1118.0 (4)
O3—C9—C8110.8 (3)C1—C2—C3118.9 (3)
N2—C8—C9108.4 (2)C1—C2—H2C120.6
N2—C8—C7109.6 (2)C3—C2—H2C120.6
C9—C8—C7111.2 (2)C2—C3—C4121.0 (3)
N2—C8—H8A109.2C2—C3—H3A119.5
C9—C8—H8A109.2C4—C3—H3A119.5
C7—C8—H8A109.2C4—C5—C6121.4 (3)
C8—N2—H11A109.5C4—C5—H5A119.3
C8—N2—H11B109.5C6—C5—H5A119.3
H11A—N2—H11B109.5C1—C6—C5118.2 (3)
C8—N2—H11C109.5C1—C6—H6A120.9
H11A—N2—H11C109.5C5—C6—H6A120.9
H11B—N2—H11C109.5O2—N1—O1123.7 (4)
C5—C4—C3118.4 (3)O2—N1—C1118.1 (4)
C5—C4—C7121.4 (3)O1—N1—C1118.2 (4)
C3—C4—C7120.2 (3)O3—C10—H10A109.5
C4—C7—C8112.7 (3)O3—C10—H10B109.5
C4—C7—H7A109.1H10A—C10—H10B109.5
C8—C7—H7A109.1O3—C10—H10C109.5
C4—C7—H7B109.1H10A—C10—H10C109.5
C8—C7—H7B109.1H10B—C10—H10C109.5
H7A—C7—H7B107.8
C10—O3—C9—O4−0.3 (4)C1—C2—C3—C4−1.1 (5)
C10—O3—C9—C8176.6 (3)C5—C4—C3—C20.9 (5)
O4—C9—C8—N2−29.2 (4)C7—C4—C3—C2−179.7 (3)
O3—C9—C8—N2153.9 (2)C3—C4—C5—C6−0.4 (5)
O4—C9—C8—C791.4 (3)C7—C4—C5—C6−179.9 (3)
O3—C9—C8—C7−85.5 (3)C2—C1—C6—C5−0.4 (6)
C5—C4—C7—C8−103.2 (4)N1—C1—C6—C5−180.0 (3)
C3—C4—C7—C877.3 (4)C4—C5—C6—C10.2 (5)
N2—C8—C7—C4−172.3 (2)C2—C1—N1—O2176.2 (4)
C9—C8—C7—C467.8 (3)C6—C1—N1—O2−4.2 (5)
C6—C1—C2—C30.8 (6)C2—C1—N1—O1−2.3 (5)
N1—C1—C2—C3−179.6 (3)C6—C1—N1—O1177.3 (4)
D—H···AD—HH···AD···AD—H···A
N2—H11B···O4i0.892.312.929 (4)127
N2—H11B···Cl1i0.892.713.380 (3)133
N2—H11C···Cl1ii0.892.423.175 (3)143
N2—H11A···Cl10.892.343.151 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H11B⋯O4i0.892.312.929 (4)127
N2—H11B⋯Cl1i0.892.713.380 (3)133
N2—H11C⋯Cl1ii0.892.423.175 (3)143
N2—H11A⋯Cl10.892.343.151 (3)151

Symmetry codes: (i) ; (ii) .

  4 in total

Review 1.  Peptidology: short amino acid modules in cell biology and immunology.

Authors:  G Lucchese; A Stufano; B Trost; A Kusalik; D Kanduc
Journal:  Amino Acids       Date:  2006-11-02       Impact factor: 3.520

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Amino acid conjugated sophorolipids: A new family of biologically active functionalized glycolipids.

Authors:  Abul Azim; Vishal Shah; Gustavo F Doncel; Nicholas Peterson; Wei Gao; Richard Gross
Journal:  Bioconjug Chem       Date:  2006 Nov-Dec       Impact factor: 4.774

4.  (S)-2-Ammonio-3-(4-nitro-phen-yl)propanoate monohydrate.

Authors:  Wei Dai; Da-Wei Fu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  4 in total
  2 in total

1.  (1S,2S)-2-Carboxy-1-(3-pyridiniometh-yl)pyrrolidin-1-ium dichloride hemihydrate.

Authors:  Jing Dai; Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-17

2.  1-Meth-oxycarbonyl-2-(4-nitro-phen-yl)ethanaminium nitrate.

Authors:  Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.