Literature DB >> 21203161

2-Ammonio-3-(4-nitro-phen-yl)propanoate monohydrate.

Wei Dai1, Da-Wei Fu.   

Abstract

The title compound, C(9)H(10)N(2)O(4)·H(2)O, exists as a zwitterion with a deprotonated carboxyl group and a protonated amine group. The crystal packing is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, building sheets parallel to the (001) plane.

Entities:  

Year:  2008        PMID: 21203161      PMCID: PMC2962077          DOI: 10.1107/S1600536808017960

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details on α-amino acids as precursors for the synthesis of novel biologically active compounds, see: Lucchese et al. (2007 ▶); Arki et al. (2004 ▶); Hauck et al. (2006 ▶); Azim et al. (2006 ▶).

Experimental

Crystal data

C9H10N2O4·H2O M = 228.21 Monoclinic, a = 6.2349 (12) Å b = 5.2990 (11) Å c = 15.727 (3) Å β = 101.40 (3)° V = 509.35 (18) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 293 (2) K 0.30 × 0.25 × 0.15 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.964, T max = 0.982 5388 measured reflections 1297 independent reflections 1184 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.14 1297 reflections 153 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808017960/rz2221sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808017960/rz2221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N2O4·H2OF000 = 240
Mr = 228.21Dx = 1.488 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1458 reflections
a = 6.2349 (12) Åθ = 3.3–27.5º
b = 5.2990 (11) ŵ = 0.12 mm1
c = 15.727 (3) ÅT = 293 (2) K
β = 101.40 (3)ºBlock, colourless
V = 509.35 (18) Å30.30 × 0.25 × 0.15 mm
Z = 2
Rigaku Mercury2 (2x2 bin mode) diffractometer1297 independent reflections
Radiation source: fine-focus sealed tube1184 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.034
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 3.3º
ω scansh = −8→8
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −6→6
Tmin = 0.964, Tmax = 0.982l = −20→19
5388 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.140  w = 1/[σ2(Fo2) + (0.0664P)2 + 0.2902P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max < 0.001
1297 reflectionsΔρmax = 0.36 e Å3
153 parametersΔρmin = −0.34 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3398 (5)0.1706 (7)0.0174 (2)0.0512 (9)
N20.2068 (5)−0.9188 (6)0.41031 (19)0.0286 (7)
H2A0.2056−1.04680.37360.043*
H2B0.0991−0.93850.43940.043*
H2D0.3345−0.91540.44750.043*
O3−0.0544 (4)−0.3216 (6)0.34808 (17)0.0342 (6)
C10.3833 (6)−0.1391 (8)0.1227 (2)0.0283 (8)
C70.1506 (6)−0.7322 (7)0.2635 (2)0.0301 (8)
H7A0.2309−0.88470.25600.036*
H7B−0.0026−0.76310.23920.036*
O4−0.1341 (4)−0.6381 (6)0.42852 (18)0.0367 (7)
O20.6547 (5)0.1366 (7)0.1010 (2)0.0537 (9)
C50.4472 (6)−0.4434 (9)0.2352 (2)0.0346 (9)
H5A0.5413−0.52210.28070.042*
C9−0.0204 (5)−0.5355 (7)0.3814 (2)0.0243 (7)
C20.1690 (6)−0.2143 (9)0.0984 (2)0.0335 (9)
H2C0.0766−0.13720.05200.040*
C30.0930 (6)−0.4068 (9)0.1441 (2)0.0330 (8)
H3A−0.0516−0.46000.12820.040*
N10.4628 (5)0.0705 (7)0.0771 (2)0.0351 (8)
C80.1756 (5)−0.6791 (7)0.3613 (2)0.0231 (7)
H8A0.3065−0.57510.37980.028*
C60.5246 (6)−0.2510 (9)0.1903 (2)0.0334 (9)
H6A0.6694−0.19820.20550.040*
C40.2310 (6)−0.5208 (8)0.2133 (2)0.0281 (7)
O50.6393 (5)−1.0768 (7)0.4286 (2)0.0412 (7)
H300.715 (8)−0.930 (12)0.427 (3)0.047 (14)*
H310.681 (11)−1.158 (18)0.393 (4)0.08 (2)*
U11U22U33U12U13U23
O10.0582 (19)0.050 (2)0.0455 (16)0.0021 (17)0.0115 (14)0.0193 (17)
N20.0280 (14)0.0290 (16)0.0305 (14)0.0084 (13)0.0095 (11)0.0063 (14)
O30.0334 (13)0.0275 (14)0.0409 (14)0.0068 (12)0.0057 (11)0.0025 (13)
C10.0351 (17)0.0278 (19)0.0241 (15)−0.0002 (15)0.0111 (13)−0.0019 (15)
C70.0401 (19)0.0273 (19)0.0246 (16)−0.0030 (16)0.0109 (14)−0.0022 (15)
O40.0374 (14)0.0334 (15)0.0452 (14)0.0024 (13)0.0223 (12)−0.0027 (13)
O20.0545 (19)0.051 (2)0.0563 (18)−0.0224 (17)0.0128 (15)0.0021 (17)
C50.0274 (17)0.044 (2)0.0313 (17)0.0054 (18)0.0037 (14)0.0094 (18)
C90.0244 (15)0.0246 (17)0.0231 (14)0.0003 (14)0.0031 (12)−0.0061 (14)
C20.0333 (18)0.041 (2)0.0249 (16)0.0008 (17)0.0024 (14)0.0034 (17)
C30.0320 (17)0.040 (2)0.0263 (16)−0.0036 (18)0.0037 (14)−0.0015 (17)
N10.0443 (18)0.0350 (18)0.0289 (15)−0.0024 (17)0.0143 (14)−0.0004 (14)
C80.0263 (15)0.0180 (16)0.0255 (15)0.0014 (13)0.0064 (12)0.0012 (13)
C60.0229 (16)0.045 (2)0.0330 (17)−0.0026 (16)0.0071 (13)0.0041 (18)
C40.0327 (17)0.0298 (18)0.0238 (15)0.0028 (16)0.0103 (13)−0.0024 (16)
O50.0308 (14)0.0402 (19)0.0557 (18)0.0035 (14)0.0160 (13)−0.0028 (15)
O1—N11.211 (4)O2—N11.232 (4)
N2—C81.478 (5)C5—C41.385 (5)
N2—H2A0.8900C5—C61.381 (6)
N2—H2B0.8900C5—H5A0.9300
N2—H2D0.8900C9—C81.524 (5)
O3—C91.249 (5)C2—C31.384 (6)
C1—C61.374 (5)C2—H2C0.9300
C1—C21.374 (5)C3—C41.387 (5)
C1—N11.461 (5)C3—H3A0.9300
C7—C41.512 (5)C8—H8A0.9800
C7—C81.541 (4)C6—H6A0.9300
C7—H7A0.9700O5—H300.92 (6)
C7—H7B0.9700O5—H310.79 (8)
O4—C91.247 (4)
C8—N2—H2A109.5C1—C2—H2C120.5
C8—N2—H2B109.5C3—C2—H2C120.5
H2A—N2—H2B109.5C2—C3—C4120.4 (3)
C8—N2—H2D109.5C2—C3—H3A119.8
H2A—N2—H2D109.5C4—C3—H3A119.8
H2B—N2—H2D109.5O1—N1—O2122.7 (4)
C6—C1—C2122.0 (4)O1—N1—C1119.3 (3)
C6—C1—N1118.7 (3)O2—N1—C1118.0 (3)
C2—C1—N1119.3 (3)N2—C8—C9110.4 (3)
C4—C7—C8114.0 (3)N2—C8—C7109.9 (3)
C4—C7—H7A108.7C9—C8—C7111.7 (3)
C8—C7—H7A108.7N2—C8—H8A108.2
C4—C7—H7B108.7C9—C8—H8A108.2
C8—C7—H7B108.7C7—C8—H8A108.2
H7A—C7—H7B107.6C1—C6—C5118.6 (3)
C4—C5—C6120.9 (3)C1—C6—H6A120.7
C4—C5—H5A119.6C5—C6—H6A120.7
C6—C5—H5A119.6C5—C4—C3119.2 (4)
O4—C9—O3125.1 (3)C5—C4—C7119.8 (3)
O4—C9—C8118.6 (3)C3—C4—C7121.0 (3)
O3—C9—C8116.3 (3)H30—O5—H31101 (6)
C1—C2—C3118.9 (3)
C6—C1—C2—C30.7 (6)C4—C7—C8—N2−150.5 (3)
N1—C1—C2—C3−177.6 (3)C4—C7—C8—C986.6 (4)
C1—C2—C3—C40.2 (6)C2—C1—C6—C5−0.5 (6)
C6—C1—N1—O1180.0 (4)N1—C1—C6—C5177.8 (4)
C2—C1—N1—O1−1.7 (5)C4—C5—C6—C1−0.7 (6)
C6—C1—N1—O20.6 (5)C6—C5—C4—C31.6 (6)
C2—C1—N1—O2178.9 (4)C6—C5—C4—C7179.9 (4)
O4—C9—C8—N2−4.9 (4)C2—C3—C4—C5−1.3 (6)
O3—C9—C8—N2175.4 (3)C2—C3—C4—C7−179.6 (3)
O4—C9—C8—C7117.7 (4)C8—C7—C4—C559.3 (5)
O3—C9—C8—C7−61.9 (4)C8—C7—C4—C3−122.4 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3i0.892.162.745 (4)123
N2—H2B···O4ii0.892.302.904 (4)125
O5—H30···O4iii0.92 (6)1.81 (6)2.721 (5)177 (5)
O5—H31···O3iv0.79 (8)2.11 (8)2.809 (4)148 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O3i0.892.162.745 (4)123
N2—H2B⋯O4ii0.892.302.904 (4)125
O5—H30⋯O4iii0.92 (6)1.81 (6)2.721 (5)177 (5)
O5—H31⋯O3iv0.79 (8)2.11 (8)2.809 (4)148 (6)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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