| Literature DB >> 21203161 |
Abstract
The title compound, C(9)H(10)N(2)O(4)·H(2)O, exists as a zwitterion with a deprotonated carboxyl group and a protonated amine group. The crystal packing is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, building sheets parallel to the (001) plane.Entities:
Year: 2008 PMID: 21203161 PMCID: PMC2962077 DOI: 10.1107/S1600536808017960
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10N2O4·H2O | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1458 reflections |
| θ = 3.3–27.5º | |
| µ = 0.12 mm−1 | |
| β = 101.40 (3)º | Block, colourless |
| 0.30 × 0.25 × 0.15 mm | |
| Rigaku Mercury2 (2x2 bin mode) diffractometer | 1297 independent reflections |
| Radiation source: fine-focus sealed tube | 1184 reflections with |
| Monochromator: graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5º |
| θmin = 3.3º | |
| ω scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | |
| 5388 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 1297 reflections | Δρmax = 0.36 e Å−3 |
| 153 parameters | Δρmin = −0.34 e Å−3 |
| 1 restraint | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.3398 (5) | 0.1706 (7) | 0.0174 (2) | 0.0512 (9) | |
| N2 | 0.2068 (5) | −0.9188 (6) | 0.41031 (19) | 0.0286 (7) | |
| H2A | 0.2056 | −1.0468 | 0.3736 | 0.043* | |
| H2B | 0.0991 | −0.9385 | 0.4394 | 0.043* | |
| H2D | 0.3345 | −0.9154 | 0.4475 | 0.043* | |
| O3 | −0.0544 (4) | −0.3216 (6) | 0.34808 (17) | 0.0342 (6) | |
| C1 | 0.3833 (6) | −0.1391 (8) | 0.1227 (2) | 0.0283 (8) | |
| C7 | 0.1506 (6) | −0.7322 (7) | 0.2635 (2) | 0.0301 (8) | |
| H7A | 0.2309 | −0.8847 | 0.2560 | 0.036* | |
| H7B | −0.0026 | −0.7631 | 0.2392 | 0.036* | |
| O4 | −0.1341 (4) | −0.6381 (6) | 0.42852 (18) | 0.0367 (7) | |
| O2 | 0.6547 (5) | 0.1366 (7) | 0.1010 (2) | 0.0537 (9) | |
| C5 | 0.4472 (6) | −0.4434 (9) | 0.2352 (2) | 0.0346 (9) | |
| H5A | 0.5413 | −0.5221 | 0.2807 | 0.042* | |
| C9 | −0.0204 (5) | −0.5355 (7) | 0.3814 (2) | 0.0243 (7) | |
| C2 | 0.1690 (6) | −0.2143 (9) | 0.0984 (2) | 0.0335 (9) | |
| H2C | 0.0766 | −0.1372 | 0.0520 | 0.040* | |
| C3 | 0.0930 (6) | −0.4068 (9) | 0.1441 (2) | 0.0330 (8) | |
| H3A | −0.0516 | −0.4600 | 0.1282 | 0.040* | |
| N1 | 0.4628 (5) | 0.0705 (7) | 0.0771 (2) | 0.0351 (8) | |
| C8 | 0.1756 (5) | −0.6791 (7) | 0.3613 (2) | 0.0231 (7) | |
| H8A | 0.3065 | −0.5751 | 0.3798 | 0.028* | |
| C6 | 0.5246 (6) | −0.2510 (9) | 0.1903 (2) | 0.0334 (9) | |
| H6A | 0.6694 | −0.1982 | 0.2055 | 0.040* | |
| C4 | 0.2310 (6) | −0.5208 (8) | 0.2133 (2) | 0.0281 (7) | |
| O5 | 0.6393 (5) | −1.0768 (7) | 0.4286 (2) | 0.0412 (7) | |
| H30 | 0.715 (8) | −0.930 (12) | 0.427 (3) | 0.047 (14)* | |
| H31 | 0.681 (11) | −1.158 (18) | 0.393 (4) | 0.08 (2)* |
| O1 | 0.0582 (19) | 0.050 (2) | 0.0455 (16) | 0.0021 (17) | 0.0115 (14) | 0.0193 (17) |
| N2 | 0.0280 (14) | 0.0290 (16) | 0.0305 (14) | 0.0084 (13) | 0.0095 (11) | 0.0063 (14) |
| O3 | 0.0334 (13) | 0.0275 (14) | 0.0409 (14) | 0.0068 (12) | 0.0057 (11) | 0.0025 (13) |
| C1 | 0.0351 (17) | 0.0278 (19) | 0.0241 (15) | −0.0002 (15) | 0.0111 (13) | −0.0019 (15) |
| C7 | 0.0401 (19) | 0.0273 (19) | 0.0246 (16) | −0.0030 (16) | 0.0109 (14) | −0.0022 (15) |
| O4 | 0.0374 (14) | 0.0334 (15) | 0.0452 (14) | 0.0024 (13) | 0.0223 (12) | −0.0027 (13) |
| O2 | 0.0545 (19) | 0.051 (2) | 0.0563 (18) | −0.0224 (17) | 0.0128 (15) | 0.0021 (17) |
| C5 | 0.0274 (17) | 0.044 (2) | 0.0313 (17) | 0.0054 (18) | 0.0037 (14) | 0.0094 (18) |
| C9 | 0.0244 (15) | 0.0246 (17) | 0.0231 (14) | 0.0003 (14) | 0.0031 (12) | −0.0061 (14) |
| C2 | 0.0333 (18) | 0.041 (2) | 0.0249 (16) | 0.0008 (17) | 0.0024 (14) | 0.0034 (17) |
| C3 | 0.0320 (17) | 0.040 (2) | 0.0263 (16) | −0.0036 (18) | 0.0037 (14) | −0.0015 (17) |
| N1 | 0.0443 (18) | 0.0350 (18) | 0.0289 (15) | −0.0024 (17) | 0.0143 (14) | −0.0004 (14) |
| C8 | 0.0263 (15) | 0.0180 (16) | 0.0255 (15) | 0.0014 (13) | 0.0064 (12) | 0.0012 (13) |
| C6 | 0.0229 (16) | 0.045 (2) | 0.0330 (17) | −0.0026 (16) | 0.0071 (13) | 0.0041 (18) |
| C4 | 0.0327 (17) | 0.0298 (18) | 0.0238 (15) | 0.0028 (16) | 0.0103 (13) | −0.0024 (16) |
| O5 | 0.0308 (14) | 0.0402 (19) | 0.0557 (18) | 0.0035 (14) | 0.0160 (13) | −0.0028 (15) |
| O1—N1 | 1.211 (4) | O2—N1 | 1.232 (4) |
| N2—C8 | 1.478 (5) | C5—C4 | 1.385 (5) |
| N2—H2A | 0.8900 | C5—C6 | 1.381 (6) |
| N2—H2B | 0.8900 | C5—H5A | 0.9300 |
| N2—H2D | 0.8900 | C9—C8 | 1.524 (5) |
| O3—C9 | 1.249 (5) | C2—C3 | 1.384 (6) |
| C1—C6 | 1.374 (5) | C2—H2C | 0.9300 |
| C1—C2 | 1.374 (5) | C3—C4 | 1.387 (5) |
| C1—N1 | 1.461 (5) | C3—H3A | 0.9300 |
| C7—C4 | 1.512 (5) | C8—H8A | 0.9800 |
| C7—C8 | 1.541 (4) | C6—H6A | 0.9300 |
| C7—H7A | 0.9700 | O5—H30 | 0.92 (6) |
| C7—H7B | 0.9700 | O5—H31 | 0.79 (8) |
| O4—C9 | 1.247 (4) | ||
| C8—N2—H2A | 109.5 | C1—C2—H2C | 120.5 |
| C8—N2—H2B | 109.5 | C3—C2—H2C | 120.5 |
| H2A—N2—H2B | 109.5 | C2—C3—C4 | 120.4 (3) |
| C8—N2—H2D | 109.5 | C2—C3—H3A | 119.8 |
| H2A—N2—H2D | 109.5 | C4—C3—H3A | 119.8 |
| H2B—N2—H2D | 109.5 | O1—N1—O2 | 122.7 (4) |
| C6—C1—C2 | 122.0 (4) | O1—N1—C1 | 119.3 (3) |
| C6—C1—N1 | 118.7 (3) | O2—N1—C1 | 118.0 (3) |
| C2—C1—N1 | 119.3 (3) | N2—C8—C9 | 110.4 (3) |
| C4—C7—C8 | 114.0 (3) | N2—C8—C7 | 109.9 (3) |
| C4—C7—H7A | 108.7 | C9—C8—C7 | 111.7 (3) |
| C8—C7—H7A | 108.7 | N2—C8—H8A | 108.2 |
| C4—C7—H7B | 108.7 | C9—C8—H8A | 108.2 |
| C8—C7—H7B | 108.7 | C7—C8—H8A | 108.2 |
| H7A—C7—H7B | 107.6 | C1—C6—C5 | 118.6 (3) |
| C4—C5—C6 | 120.9 (3) | C1—C6—H6A | 120.7 |
| C4—C5—H5A | 119.6 | C5—C6—H6A | 120.7 |
| C6—C5—H5A | 119.6 | C5—C4—C3 | 119.2 (4) |
| O4—C9—O3 | 125.1 (3) | C5—C4—C7 | 119.8 (3) |
| O4—C9—C8 | 118.6 (3) | C3—C4—C7 | 121.0 (3) |
| O3—C9—C8 | 116.3 (3) | H30—O5—H31 | 101 (6) |
| C1—C2—C3 | 118.9 (3) | ||
| C6—C1—C2—C3 | 0.7 (6) | C4—C7—C8—N2 | −150.5 (3) |
| N1—C1—C2—C3 | −177.6 (3) | C4—C7—C8—C9 | 86.6 (4) |
| C1—C2—C3—C4 | 0.2 (6) | C2—C1—C6—C5 | −0.5 (6) |
| C6—C1—N1—O1 | 180.0 (4) | N1—C1—C6—C5 | 177.8 (4) |
| C2—C1—N1—O1 | −1.7 (5) | C4—C5—C6—C1 | −0.7 (6) |
| C6—C1—N1—O2 | 0.6 (5) | C6—C5—C4—C3 | 1.6 (6) |
| C2—C1—N1—O2 | 178.9 (4) | C6—C5—C4—C7 | 179.9 (4) |
| O4—C9—C8—N2 | −4.9 (4) | C2—C3—C4—C5 | −1.3 (6) |
| O3—C9—C8—N2 | 175.4 (3) | C2—C3—C4—C7 | −179.6 (3) |
| O4—C9—C8—C7 | 117.7 (4) | C8—C7—C4—C5 | 59.3 (5) |
| O3—C9—C8—C7 | −61.9 (4) | C8—C7—C4—C3 | −122.4 (4) |
| H··· | ||||
| N2—H2A···O3i | 0.89 | 2.16 | 2.745 (4) | 123 |
| N2—H2B···O4ii | 0.89 | 2.30 | 2.904 (4) | 125 |
| O5—H30···O4iii | 0.92 (6) | 1.81 (6) | 2.721 (5) | 177 (5) |
| O5—H31···O3iv | 0.79 (8) | 2.11 (8) | 2.809 (4) | 148 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.89 | 2.16 | 2.745 (4) | 123 |
| N2—H2 | 0.89 | 2.30 | 2.904 (4) | 125 |
| O5—H30⋯O4iii | 0.92 (6) | 1.81 (6) | 2.721 (5) | 177 (5) |
| O5—H31⋯O3iv | 0.79 (8) | 2.11 (8) | 2.809 (4) | 148 (6) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .