| Literature DB >> 21203154 |
Ben-Yong Lou1, Xia Guo, Qi Lin.
Abstract
The title compound, amtolmetin guacil, C(24)H(24)N(2)O(5), is a new gastroprotective non-steroidal anti-inflammatory drug. In the crystal structure, the drug mol-ecule is linked into a one-dimensional structure along the c axis by weak N-H⋯O inter-actions between the amide groups. C-H⋯O and C-H⋯π inter-actions influence the packing.Entities:
Year: 2008 PMID: 21203154 PMCID: PMC2962070 DOI: 10.1107/S1600536808020722
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C24H24N2O5 | |
| Orthorhombic, | Mo |
| Hall symbol: P2c-2n | Cell parameters from 19812 reflections |
| θ = 3.5–27.5º | |
| µ = 0.09 mm−1 | |
| Block, colorless | |
| 0.30 × 0.25 × 0.20 mm |
| Rigaku Weissenberg IP diffractometer | 1938 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 27.5º |
| θmin = 3.5º | |
| scintillation counter scans | |
| Absorption correction: none | |
| 19812 measured reflections | |
| 2626 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2626 reflections | Δρmax = 0.13 e Å−3 |
| 284 parameters | Δρmin = −0.17 e Å−3 |
| 1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0111 (12) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.0274 (2) | 0.40855 (14) | 0.2773 (3) | 0.0591 (8) | |
| O2 | 0.1174 (2) | 0.48242 (13) | 0.4332 (4) | 0.0637 (8) | |
| O3 | 0.2659 (2) | 0.40913 (14) | 0.4028 (4) | 0.0647 (9) | |
| O4 | 0.4775 (2) | 0.51742 (15) | 0.4870 (3) | 0.0595 (8) | |
| O5 | 0.7830 (4) | 0.75559 (16) | 0.3571 (4) | 0.0995 (13) | |
| N1 | 0.4020 (2) | 0.51066 (16) | 0.2744 (3) | 0.0481 (8) | |
| H1 | 0.4147 | 0.5028 | 0.1864 | 0.058* | |
| N2 | 0.6986 (2) | 0.61548 (15) | 0.3541 (3) | 0.0438 (7) | |
| C1 | −0.1080 (4) | 0.3716 (3) | 0.1921 (5) | 0.0747 (14) | |
| H1A | −0.0888 | 0.3233 | 0.1960 | 0.112* | |
| H1B | −0.1016 | 0.3876 | 0.0969 | 0.112* | |
| H1C | −0.1890 | 0.3787 | 0.2252 | 0.112* | |
| C2 | −0.0308 (3) | 0.39568 (19) | 0.4136 (5) | 0.0469 (9) | |
| C3 | −0.1055 (3) | 0.35013 (19) | 0.4785 (5) | 0.0547 (11) | |
| H3 | −0.1590 | 0.3239 | 0.4251 | 0.066* | |
| C4 | −0.1032 (4) | 0.3424 (2) | 0.6190 (5) | 0.0676 (13) | |
| H4 | −0.1552 | 0.3111 | 0.6620 | 0.081* | |
| C5 | −0.0266 (4) | 0.3793 (3) | 0.6973 (5) | 0.0721 (13) | |
| H5 | −0.0254 | 0.3735 | 0.7944 | 0.086* | |
| C6 | 0.0490 (4) | 0.4250 (2) | 0.6363 (5) | 0.0678 (13) | |
| H6 | 0.1021 | 0.4509 | 0.6907 | 0.081* | |
| C7 | 0.0467 (3) | 0.43263 (19) | 0.4957 (5) | 0.0505 (10) | |
| C8 | 0.2255 (3) | 0.4638 (2) | 0.3893 (4) | 0.0464 (9) | |
| C9 | 0.2833 (3) | 0.5239 (2) | 0.3221 (4) | 0.0538 (10) | |
| H9A | 0.2344 | 0.5385 | 0.2429 | 0.065* | |
| H9B | 0.2856 | 0.5618 | 0.3888 | 0.065* | |
| C10 | 0.4926 (3) | 0.51018 (18) | 0.3624 (4) | 0.0448 (9) | |
| C11 | 0.6148 (3) | 0.5008 (2) | 0.3026 (4) | 0.0478 (10) | |
| H11A | 0.6407 | 0.4533 | 0.3153 | 0.057* | |
| H11B | 0.6135 | 0.5106 | 0.2027 | 0.057* | |
| C12 | 0.6995 (3) | 0.54758 (17) | 0.3735 (4) | 0.0402 (8) | |
| C13 | 0.7776 (3) | 0.53269 (19) | 0.4760 (4) | 0.0456 (9) | |
| H13 | 0.7976 | 0.4888 | 0.5084 | 0.055* | |
| C14 | 0.8228 (3) | 0.59397 (19) | 0.5247 (4) | 0.0486 (10) | |
| H14 | 0.8779 | 0.5993 | 0.5978 | 0.058* | |
| C15 | 0.7734 (3) | 0.64510 (18) | 0.4483 (4) | 0.0458 (9) | |
| C16 | 0.6281 (4) | 0.6504 (2) | 0.2510 (4) | 0.0677 (13) | |
| H16A | 0.6737 | 0.6544 | 0.1656 | 0.102* | |
| H16B | 0.6074 | 0.6956 | 0.2847 | 0.102* | |
| H16C | 0.5556 | 0.6246 | 0.2332 | 0.102* | |
| C17 | 0.7972 (4) | 0.7178 (2) | 0.4555 (4) | 0.0581 (11) | |
| C18 | 0.8422 (3) | 0.74440 (19) | 0.5879 (4) | 0.0483 (9) | |
| C19 | 0.8074 (3) | 0.71810 (18) | 0.7124 (4) | 0.0482 (10) | |
| H19 | 0.7539 | 0.6811 | 0.7145 | 0.058* | |
| C20 | 0.8493 (3) | 0.74480 (19) | 0.8353 (4) | 0.0512 (10) | |
| H20 | 0.8244 | 0.7258 | 0.9204 | 0.061* | |
| C21 | 0.9197 (4) | 0.79965 (19) | 0.5888 (5) | 0.0576 (11) | |
| H21 | 0.9435 | 0.8195 | 0.5042 | 0.069* | |
| C22 | 0.9615 (3) | 0.8255 (2) | 0.7100 (5) | 0.0580 (11) | |
| H22 | 1.0152 | 0.8624 | 0.7080 | 0.070* | |
| C23 | 0.9273 (3) | 0.79901 (19) | 0.8349 (5) | 0.0529 (10) | |
| C24 | 0.9719 (5) | 0.8269 (2) | 0.9692 (5) | 0.0820 (16) | |
| H24A | 1.0546 | 0.8408 | 0.9588 | 0.123* | |
| H24B | 0.9662 | 0.7920 | 1.0406 | 0.123* | |
| H24C | 0.9240 | 0.8661 | 0.9958 | 0.123* |
| O1 | 0.0588 (17) | 0.0615 (18) | 0.0569 (18) | −0.0087 (14) | 0.0102 (15) | −0.0022 (15) |
| O2 | 0.0390 (13) | 0.0507 (15) | 0.101 (2) | −0.0013 (12) | 0.0066 (16) | −0.0015 (17) |
| O3 | 0.0476 (15) | 0.0512 (17) | 0.096 (2) | 0.0026 (13) | 0.0111 (16) | −0.0020 (16) |
| O4 | 0.0488 (15) | 0.091 (2) | 0.0383 (16) | −0.0072 (15) | 0.0047 (13) | −0.0114 (16) |
| O5 | 0.164 (3) | 0.065 (2) | 0.069 (2) | −0.033 (2) | −0.042 (3) | 0.0247 (19) |
| N1 | 0.0393 (17) | 0.064 (2) | 0.0406 (17) | −0.0050 (15) | −0.0003 (15) | −0.0036 (16) |
| N2 | 0.0472 (16) | 0.0503 (18) | 0.0339 (16) | −0.0026 (14) | −0.0076 (15) | 0.0020 (15) |
| C1 | 0.058 (3) | 0.102 (4) | 0.064 (3) | −0.004 (3) | −0.003 (3) | −0.008 (3) |
| C2 | 0.040 (2) | 0.043 (2) | 0.057 (3) | 0.0051 (17) | 0.011 (2) | −0.0051 (19) |
| C3 | 0.048 (2) | 0.043 (2) | 0.073 (3) | −0.0034 (18) | 0.012 (2) | −0.007 (2) |
| C4 | 0.064 (3) | 0.063 (3) | 0.076 (4) | 0.006 (2) | 0.024 (3) | 0.012 (3) |
| C5 | 0.071 (3) | 0.087 (3) | 0.059 (3) | 0.013 (3) | 0.001 (3) | 0.012 (3) |
| C6 | 0.052 (3) | 0.079 (3) | 0.072 (3) | 0.002 (2) | −0.008 (2) | −0.009 (3) |
| C7 | 0.039 (2) | 0.045 (2) | 0.067 (3) | 0.0008 (18) | 0.007 (2) | 0.001 (2) |
| C8 | 0.0365 (18) | 0.050 (2) | 0.052 (2) | −0.0055 (18) | −0.0036 (18) | −0.0102 (19) |
| C9 | 0.042 (2) | 0.061 (2) | 0.059 (3) | 0.0005 (19) | −0.006 (2) | 0.002 (2) |
| C10 | 0.046 (2) | 0.050 (2) | 0.039 (2) | −0.0093 (17) | 0.0015 (19) | −0.0059 (19) |
| C11 | 0.045 (2) | 0.062 (2) | 0.036 (2) | −0.0069 (18) | −0.0002 (17) | −0.0103 (18) |
| C12 | 0.0370 (17) | 0.050 (2) | 0.0338 (19) | −0.0018 (16) | 0.0052 (16) | −0.0062 (17) |
| C13 | 0.043 (2) | 0.046 (2) | 0.048 (2) | 0.0054 (17) | −0.0036 (19) | −0.0019 (18) |
| C14 | 0.042 (2) | 0.055 (2) | 0.048 (2) | −0.0012 (18) | −0.0135 (18) | −0.002 (2) |
| C15 | 0.050 (2) | 0.048 (2) | 0.040 (2) | −0.0054 (17) | −0.0137 (19) | −0.0016 (18) |
| C16 | 0.077 (3) | 0.071 (3) | 0.055 (3) | −0.003 (2) | −0.029 (2) | 0.015 (2) |
| C17 | 0.071 (3) | 0.052 (2) | 0.052 (3) | −0.008 (2) | −0.013 (2) | 0.008 (2) |
| C18 | 0.053 (2) | 0.038 (2) | 0.054 (2) | −0.0030 (18) | −0.007 (2) | −0.001 (2) |
| C19 | 0.048 (2) | 0.0395 (19) | 0.058 (3) | −0.0020 (16) | −0.012 (2) | 0.000 (2) |
| C20 | 0.057 (2) | 0.046 (2) | 0.051 (2) | 0.0035 (19) | −0.007 (2) | −0.004 (2) |
| C21 | 0.060 (2) | 0.043 (2) | 0.070 (3) | −0.007 (2) | −0.002 (2) | 0.003 (2) |
| C22 | 0.057 (2) | 0.043 (2) | 0.075 (3) | −0.0097 (18) | −0.004 (3) | −0.011 (2) |
| C23 | 0.052 (2) | 0.043 (2) | 0.063 (3) | 0.0061 (18) | −0.021 (2) | −0.012 (2) |
| C24 | 0.098 (4) | 0.069 (3) | 0.079 (3) | −0.003 (3) | −0.034 (3) | −0.024 (3) |
| O1—C2 | 1.349 (5) | C10—C11 | 1.511 (5) |
| O1—C1 | 1.431 (5) | C11—C12 | 1.499 (5) |
| O2—C8 | 1.346 (4) | C11—H11A | 0.9900 |
| O2—C7 | 1.406 (5) | C11—H11B | 0.9900 |
| O3—C8 | 1.181 (4) | C12—C13 | 1.363 (5) |
| O4—C10 | 1.230 (4) | C13—C14 | 1.397 (5) |
| O5—C17 | 1.223 (5) | C13—H13 | 0.9500 |
| N1—C10 | 1.334 (5) | C14—C15 | 1.372 (5) |
| N1—C9 | 1.443 (4) | C14—H14 | 0.9500 |
| N1—H1 | 0.8800 | C15—C17 | 1.464 (5) |
| N2—C12 | 1.355 (4) | C16—H16A | 0.9800 |
| N2—C15 | 1.377 (4) | C16—H16B | 0.9800 |
| N2—C16 | 1.454 (5) | C16—H16C | 0.9800 |
| C1—H1A | 0.9800 | C17—C18 | 1.479 (6) |
| C1—H1B | 0.9800 | C18—C19 | 1.374 (5) |
| C1—H1C | 0.9800 | C18—C21 | 1.400 (5) |
| C2—C3 | 1.386 (6) | C19—C20 | 1.388 (6) |
| C2—C7 | 1.392 (6) | C19—H19 | 0.9500 |
| C3—C4 | 1.374 (6) | C20—C23 | 1.388 (5) |
| C3—H3 | 0.9500 | C20—H20 | 0.9500 |
| C4—C5 | 1.365 (7) | C21—C22 | 1.367 (6) |
| C4—H4 | 0.9500 | C21—H21 | 0.9500 |
| C5—C6 | 1.377 (7) | C22—C23 | 1.376 (6) |
| C5—H5 | 0.9500 | C22—H22 | 0.9500 |
| C6—C7 | 1.374 (6) | C23—C24 | 1.504 (6) |
| C6—H6 | 0.9500 | C24—H24A | 0.9800 |
| C8—C9 | 1.505 (5) | C24—H24B | 0.9800 |
| C9—H9A | 0.9900 | C24—H24C | 0.9800 |
| C9—H9B | 0.9900 | ||
| C2—O1—C1 | 116.9 (3) | C10—C11—H11B | 109.8 |
| C8—O2—C7 | 117.5 (3) | H11A—C11—H11B | 108.2 |
| C10—N1—C9 | 120.6 (3) | N2—C12—C13 | 108.7 (3) |
| C10—N1—H1 | 119.7 | N2—C12—C11 | 122.9 (3) |
| C9—N1—H1 | 119.7 | C13—C12—C11 | 128.0 (3) |
| C12—N2—C15 | 108.9 (3) | C12—C13—C14 | 107.3 (3) |
| C12—N2—C16 | 124.7 (3) | C12—C13—H13 | 126.4 |
| C15—N2—C16 | 126.4 (3) | C14—C13—H13 | 126.4 |
| O1—C1—H1A | 109.5 | C15—C14—C13 | 107.9 (3) |
| O1—C1—H1B | 109.5 | C15—C14—H14 | 126.1 |
| H1A—C1—H1B | 109.5 | C13—C14—H14 | 126.1 |
| O1—C1—H1C | 109.5 | C14—C15—N2 | 107.2 (3) |
| H1A—C1—H1C | 109.5 | C14—C15—C17 | 128.5 (3) |
| H1B—C1—H1C | 109.5 | N2—C15—C17 | 124.2 (3) |
| O1—C2—C3 | 125.9 (4) | N2—C16—H16A | 109.5 |
| O1—C2—C7 | 116.4 (4) | N2—C16—H16B | 109.5 |
| C3—C2—C7 | 117.7 (4) | H16A—C16—H16B | 109.5 |
| C4—C3—C2 | 120.8 (4) | N2—C16—H16C | 109.5 |
| C4—C3—H3 | 119.6 | H16A—C16—H16C | 109.5 |
| C2—C3—H3 | 119.6 | H16B—C16—H16C | 109.5 |
| C5—C4—C3 | 120.4 (5) | O5—C17—C15 | 122.5 (4) |
| C5—C4—H4 | 119.8 | O5—C17—C18 | 120.5 (4) |
| C3—C4—H4 | 119.8 | C15—C17—C18 | 117.0 (3) |
| C4—C5—C6 | 120.3 (5) | C19—C18—C21 | 117.9 (4) |
| C4—C5—H5 | 119.9 | C19—C18—C17 | 122.2 (3) |
| C6—C5—H5 | 119.9 | C21—C18—C17 | 119.9 (4) |
| C7—C6—C5 | 119.3 (5) | C18—C19—C20 | 121.0 (3) |
| C7—C6—H6 | 120.4 | C18—C19—H19 | 119.5 |
| C5—C6—H6 | 120.4 | C20—C19—H19 | 119.5 |
| C6—C7—C2 | 121.5 (4) | C23—C20—C19 | 120.5 (4) |
| C6—C7—O2 | 119.7 (4) | C23—C20—H20 | 119.8 |
| C2—C7—O2 | 118.6 (4) | C19—C20—H20 | 119.8 |
| O3—C8—O2 | 124.5 (4) | C22—C21—C18 | 120.9 (4) |
| O3—C8—C9 | 127.1 (3) | C22—C21—H21 | 119.5 |
| O2—C8—C9 | 108.4 (3) | C18—C21—H21 | 119.5 |
| N1—C9—C8 | 113.5 (3) | C21—C22—C23 | 121.3 (4) |
| N1—C9—H9A | 108.9 | C21—C22—H22 | 119.4 |
| C8—C9—H9A | 108.9 | C23—C22—H22 | 119.4 |
| N1—C9—H9B | 108.9 | C22—C23—C20 | 118.4 (4) |
| C8—C9—H9B | 108.9 | C22—C23—C24 | 122.1 (4) |
| H9A—C9—H9B | 107.7 | C20—C23—C24 | 119.6 (4) |
| O4—C10—N1 | 121.5 (4) | C23—C24—H24A | 109.5 |
| O4—C10—C11 | 121.3 (3) | C23—C24—H24B | 109.5 |
| N1—C10—C11 | 117.2 (3) | H24A—C24—H24B | 109.5 |
| C12—C11—C10 | 109.4 (3) | C23—C24—H24C | 109.5 |
| C12—C11—H11A | 109.8 | H24A—C24—H24C | 109.5 |
| C10—C11—H11A | 109.8 | H24B—C24—H24C | 109.5 |
| C12—C11—H11B | 109.8 |
| D—H···A | D—H (Å) | H···A (Å) | D···A (Å) | D—H···A (°) |
| N1—H1···O4i | 0.88 | 2.32 | 3.1564 | 157 |
| C11—H11B···O4i | 0.99 | 2.40 | 3.2586 | 145 |
| C24—H24A···O3ii | 0.98 | 2.50 | 3.4418 | 162 |
| C14—H14··· O1iii | 0.95 | 2.43 | 3.3722 | 170 |
| C19—H19··· O3iii | 0.95 | 2.56 | 3.2300 | 127 |
| C13—H13··· Cg1iv | 0.95 | 2.85 | 3.6961 | 150 |
Hydrogen-bonding geometry (Å, °)
Cg1 is the centroid of the C2/C3–C7 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O4i | 0.88 | 2.32 | 3.1564 | 157 |
| C11—H11 | 0.99 | 2.40 | 3.2586 | 145 |
| C24—H24 | 0.98 | 2.50 | 3.4418 | 162 |
| C14—H14⋯ O1iii | 0.95 | 2.43 | 3.3722 | 170 |
| C19—H19⋯ O3iii | 0.95 | 2.56 | 3.2300 | 127 |
| C13—H13⋯ | 0.95 | 2.85 | 3.6961 | 150 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .