Literature DB >> 21203154

2-Methoxy-phenyl 2-{2-[1-methyl-5-(4-methyl-benzo-yl)pyrrol-2-yl]acetamido}acetate.

Ben-Yong Lou1, Xia Guo, Qi Lin.   

Abstract

The title compound, amtolmetin guacil, C(24)H(24)N(2)O(5), is a new gastroprotective non-steroidal anti-inflammatory drug. In the crystal structure, the drug mol-ecule is linked into a one-dimensional structure along the c axis by weak N-H⋯O inter-actions between the amide groups. C-H⋯O and C-H⋯π inter-actions influence the packing.

Entities:  

Year:  2008        PMID: 21203154      PMCID: PMC2962070          DOI: 10.1107/S1600536808020722

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background, see: Tubaro et al. (2000 ▶); Vippagunta et al. (2001 ▶).

Experimental

Crystal data

C24H24N2O5 M = 420.45 Orthorhombic, a = 11.307 (3) Å b = 19.768 (7) Å c = 9.713 (3) Å V = 2170.9 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku Weissenberg IP diffractometer Absorption correction: none 19812 measured reflections 2626 independent reflections 1938 reflections with I > 2σ(I) R int = 0.085

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.109 S = 1.12 2626 reflections 284 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.17 e Å−3 Data collection: TEXRAY (Molecular Structure Corporation, 1999 ▶); cell refinement: TEXRAY; data reduction: TEXSAN (Molecular Structure Corporation, 1999 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808020722/bv2099sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808020722/bv2099Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H24N2O5F000 = 888
Mr = 420.45Dx = 1.286 Mg m3
Orthorhombic, Pna21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P2c-2nCell parameters from 19812 reflections
a = 11.307 (3) Åθ = 3.5–27.5º
b = 19.768 (7) ŵ = 0.09 mm1
c = 9.713 (3) ÅT = 293 (2) K
V = 2170.9 (12) Å3Block, colorless
Z = 40.30 × 0.25 × 0.20 mm
Rigaku Weissenberg IP diffractometer1938 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.085
Monochromator: graphiteθmax = 27.5º
T = 293(2) Kθmin = 3.5º
scintillation counter scansh = −14→14
Absorption correction: nonek = −25→25
19812 measured reflectionsl = −12→12
2626 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H-atom parameters constrained
wR(F2) = 0.109  w = 1/[σ2(Fo2) + (0.0337P)2 + 0.5426P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
2626 reflectionsΔρmax = 0.13 e Å3
284 parametersΔρmin = −0.17 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0111 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.0274 (2)0.40855 (14)0.2773 (3)0.0591 (8)
O20.1174 (2)0.48242 (13)0.4332 (4)0.0637 (8)
O30.2659 (2)0.40913 (14)0.4028 (4)0.0647 (9)
O40.4775 (2)0.51742 (15)0.4870 (3)0.0595 (8)
O50.7830 (4)0.75559 (16)0.3571 (4)0.0995 (13)
N10.4020 (2)0.51066 (16)0.2744 (3)0.0481 (8)
H10.41470.50280.18640.058*
N20.6986 (2)0.61548 (15)0.3541 (3)0.0438 (7)
C1−0.1080 (4)0.3716 (3)0.1921 (5)0.0747 (14)
H1A−0.08880.32330.19600.112*
H1B−0.10160.38760.09690.112*
H1C−0.18900.37870.22520.112*
C2−0.0308 (3)0.39568 (19)0.4136 (5)0.0469 (9)
C3−0.1055 (3)0.35013 (19)0.4785 (5)0.0547 (11)
H3−0.15900.32390.42510.066*
C4−0.1032 (4)0.3424 (2)0.6190 (5)0.0676 (13)
H4−0.15520.31110.66200.081*
C5−0.0266 (4)0.3793 (3)0.6973 (5)0.0721 (13)
H5−0.02540.37350.79440.086*
C60.0490 (4)0.4250 (2)0.6363 (5)0.0678 (13)
H60.10210.45090.69070.081*
C70.0467 (3)0.43263 (19)0.4957 (5)0.0505 (10)
C80.2255 (3)0.4638 (2)0.3893 (4)0.0464 (9)
C90.2833 (3)0.5239 (2)0.3221 (4)0.0538 (10)
H9A0.23440.53850.24290.065*
H9B0.28560.56180.38880.065*
C100.4926 (3)0.51018 (18)0.3624 (4)0.0448 (9)
C110.6148 (3)0.5008 (2)0.3026 (4)0.0478 (10)
H11A0.64070.45330.31530.057*
H11B0.61350.51060.20270.057*
C120.6995 (3)0.54758 (17)0.3735 (4)0.0402 (8)
C130.7776 (3)0.53269 (19)0.4760 (4)0.0456 (9)
H130.79760.48880.50840.055*
C140.8228 (3)0.59397 (19)0.5247 (4)0.0486 (10)
H140.87790.59930.59780.058*
C150.7734 (3)0.64510 (18)0.4483 (4)0.0458 (9)
C160.6281 (4)0.6504 (2)0.2510 (4)0.0677 (13)
H16A0.67370.65440.16560.102*
H16B0.60740.69560.28470.102*
H16C0.55560.62460.23320.102*
C170.7972 (4)0.7178 (2)0.4555 (4)0.0581 (11)
C180.8422 (3)0.74440 (19)0.5879 (4)0.0483 (9)
C190.8074 (3)0.71810 (18)0.7124 (4)0.0482 (10)
H190.75390.68110.71450.058*
C200.8493 (3)0.74480 (19)0.8353 (4)0.0512 (10)
H200.82440.72580.92040.061*
C210.9197 (4)0.79965 (19)0.5888 (5)0.0576 (11)
H210.94350.81950.50420.069*
C220.9615 (3)0.8255 (2)0.7100 (5)0.0580 (11)
H221.01520.86240.70800.070*
C230.9273 (3)0.79901 (19)0.8349 (5)0.0529 (10)
C240.9719 (5)0.8269 (2)0.9692 (5)0.0820 (16)
H24A1.05460.84080.95880.123*
H24B0.96620.79201.04060.123*
H24C0.92400.86610.99580.123*
U11U22U33U12U13U23
O10.0588 (17)0.0615 (18)0.0569 (18)−0.0087 (14)0.0102 (15)−0.0022 (15)
O20.0390 (13)0.0507 (15)0.101 (2)−0.0013 (12)0.0066 (16)−0.0015 (17)
O30.0476 (15)0.0512 (17)0.096 (2)0.0026 (13)0.0111 (16)−0.0020 (16)
O40.0488 (15)0.091 (2)0.0383 (16)−0.0072 (15)0.0047 (13)−0.0114 (16)
O50.164 (3)0.065 (2)0.069 (2)−0.033 (2)−0.042 (3)0.0247 (19)
N10.0393 (17)0.064 (2)0.0406 (17)−0.0050 (15)−0.0003 (15)−0.0036 (16)
N20.0472 (16)0.0503 (18)0.0339 (16)−0.0026 (14)−0.0076 (15)0.0020 (15)
C10.058 (3)0.102 (4)0.064 (3)−0.004 (3)−0.003 (3)−0.008 (3)
C20.040 (2)0.043 (2)0.057 (3)0.0051 (17)0.011 (2)−0.0051 (19)
C30.048 (2)0.043 (2)0.073 (3)−0.0034 (18)0.012 (2)−0.007 (2)
C40.064 (3)0.063 (3)0.076 (4)0.006 (2)0.024 (3)0.012 (3)
C50.071 (3)0.087 (3)0.059 (3)0.013 (3)0.001 (3)0.012 (3)
C60.052 (3)0.079 (3)0.072 (3)0.002 (2)−0.008 (2)−0.009 (3)
C70.039 (2)0.045 (2)0.067 (3)0.0008 (18)0.007 (2)0.001 (2)
C80.0365 (18)0.050 (2)0.052 (2)−0.0055 (18)−0.0036 (18)−0.0102 (19)
C90.042 (2)0.061 (2)0.059 (3)0.0005 (19)−0.006 (2)0.002 (2)
C100.046 (2)0.050 (2)0.039 (2)−0.0093 (17)0.0015 (19)−0.0059 (19)
C110.045 (2)0.062 (2)0.036 (2)−0.0069 (18)−0.0002 (17)−0.0103 (18)
C120.0370 (17)0.050 (2)0.0338 (19)−0.0018 (16)0.0052 (16)−0.0062 (17)
C130.043 (2)0.046 (2)0.048 (2)0.0054 (17)−0.0036 (19)−0.0019 (18)
C140.042 (2)0.055 (2)0.048 (2)−0.0012 (18)−0.0135 (18)−0.002 (2)
C150.050 (2)0.048 (2)0.040 (2)−0.0054 (17)−0.0137 (19)−0.0016 (18)
C160.077 (3)0.071 (3)0.055 (3)−0.003 (2)−0.029 (2)0.015 (2)
C170.071 (3)0.052 (2)0.052 (3)−0.008 (2)−0.013 (2)0.008 (2)
C180.053 (2)0.038 (2)0.054 (2)−0.0030 (18)−0.007 (2)−0.001 (2)
C190.048 (2)0.0395 (19)0.058 (3)−0.0020 (16)−0.012 (2)0.000 (2)
C200.057 (2)0.046 (2)0.051 (2)0.0035 (19)−0.007 (2)−0.004 (2)
C210.060 (2)0.043 (2)0.070 (3)−0.007 (2)−0.002 (2)0.003 (2)
C220.057 (2)0.043 (2)0.075 (3)−0.0097 (18)−0.004 (3)−0.011 (2)
C230.052 (2)0.043 (2)0.063 (3)0.0061 (18)−0.021 (2)−0.012 (2)
C240.098 (4)0.069 (3)0.079 (3)−0.003 (3)−0.034 (3)−0.024 (3)
O1—C21.349 (5)C10—C111.511 (5)
O1—C11.431 (5)C11—C121.499 (5)
O2—C81.346 (4)C11—H11A0.9900
O2—C71.406 (5)C11—H11B0.9900
O3—C81.181 (4)C12—C131.363 (5)
O4—C101.230 (4)C13—C141.397 (5)
O5—C171.223 (5)C13—H130.9500
N1—C101.334 (5)C14—C151.372 (5)
N1—C91.443 (4)C14—H140.9500
N1—H10.8800C15—C171.464 (5)
N2—C121.355 (4)C16—H16A0.9800
N2—C151.377 (4)C16—H16B0.9800
N2—C161.454 (5)C16—H16C0.9800
C1—H1A0.9800C17—C181.479 (6)
C1—H1B0.9800C18—C191.374 (5)
C1—H1C0.9800C18—C211.400 (5)
C2—C31.386 (6)C19—C201.388 (6)
C2—C71.392 (6)C19—H190.9500
C3—C41.374 (6)C20—C231.388 (5)
C3—H30.9500C20—H200.9500
C4—C51.365 (7)C21—C221.367 (6)
C4—H40.9500C21—H210.9500
C5—C61.377 (7)C22—C231.376 (6)
C5—H50.9500C22—H220.9500
C6—C71.374 (6)C23—C241.504 (6)
C6—H60.9500C24—H24A0.9800
C8—C91.505 (5)C24—H24B0.9800
C9—H9A0.9900C24—H24C0.9800
C9—H9B0.9900
C2—O1—C1116.9 (3)C10—C11—H11B109.8
C8—O2—C7117.5 (3)H11A—C11—H11B108.2
C10—N1—C9120.6 (3)N2—C12—C13108.7 (3)
C10—N1—H1119.7N2—C12—C11122.9 (3)
C9—N1—H1119.7C13—C12—C11128.0 (3)
C12—N2—C15108.9 (3)C12—C13—C14107.3 (3)
C12—N2—C16124.7 (3)C12—C13—H13126.4
C15—N2—C16126.4 (3)C14—C13—H13126.4
O1—C1—H1A109.5C15—C14—C13107.9 (3)
O1—C1—H1B109.5C15—C14—H14126.1
H1A—C1—H1B109.5C13—C14—H14126.1
O1—C1—H1C109.5C14—C15—N2107.2 (3)
H1A—C1—H1C109.5C14—C15—C17128.5 (3)
H1B—C1—H1C109.5N2—C15—C17124.2 (3)
O1—C2—C3125.9 (4)N2—C16—H16A109.5
O1—C2—C7116.4 (4)N2—C16—H16B109.5
C3—C2—C7117.7 (4)H16A—C16—H16B109.5
C4—C3—C2120.8 (4)N2—C16—H16C109.5
C4—C3—H3119.6H16A—C16—H16C109.5
C2—C3—H3119.6H16B—C16—H16C109.5
C5—C4—C3120.4 (5)O5—C17—C15122.5 (4)
C5—C4—H4119.8O5—C17—C18120.5 (4)
C3—C4—H4119.8C15—C17—C18117.0 (3)
C4—C5—C6120.3 (5)C19—C18—C21117.9 (4)
C4—C5—H5119.9C19—C18—C17122.2 (3)
C6—C5—H5119.9C21—C18—C17119.9 (4)
C7—C6—C5119.3 (5)C18—C19—C20121.0 (3)
C7—C6—H6120.4C18—C19—H19119.5
C5—C6—H6120.4C20—C19—H19119.5
C6—C7—C2121.5 (4)C23—C20—C19120.5 (4)
C6—C7—O2119.7 (4)C23—C20—H20119.8
C2—C7—O2118.6 (4)C19—C20—H20119.8
O3—C8—O2124.5 (4)C22—C21—C18120.9 (4)
O3—C8—C9127.1 (3)C22—C21—H21119.5
O2—C8—C9108.4 (3)C18—C21—H21119.5
N1—C9—C8113.5 (3)C21—C22—C23121.3 (4)
N1—C9—H9A108.9C21—C22—H22119.4
C8—C9—H9A108.9C23—C22—H22119.4
N1—C9—H9B108.9C22—C23—C20118.4 (4)
C8—C9—H9B108.9C22—C23—C24122.1 (4)
H9A—C9—H9B107.7C20—C23—C24119.6 (4)
O4—C10—N1121.5 (4)C23—C24—H24A109.5
O4—C10—C11121.3 (3)C23—C24—H24B109.5
N1—C10—C11117.2 (3)H24A—C24—H24B109.5
C12—C11—C10109.4 (3)C23—C24—H24C109.5
C12—C11—H11A109.8H24A—C24—H24C109.5
C10—C11—H11A109.8H24B—C24—H24C109.5
C12—C11—H11B109.8
D—H···AD—H (Å)H···A (Å)D···A (Å)D—H···A (°)
N1—H1···O4i0.882.323.1564157
C11—H11B···O4i0.992.403.2586145
C24—H24A···O3ii0.982.503.4418162
C14—H14··· O1iii0.952.433.3722170
C19—H19··· O3iii0.952.563.2300127
C13—H13··· Cg1iv0.952.853.6961150
Table 1

Hydrogen-bonding geometry (Å, °)

Cg1 is the centroid of the C2/C3–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.882.323.1564157
C11—H11B⋯O4i0.992.403.2586145
C24—H24A⋯O3ii0.982.503.4418162
C14—H14⋯ O1iii0.952.433.3722170
C19—H19⋯ O3iii0.952.563.2300127
C13—H13⋯ Cg1iv0.952.853.6961150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

Review 1.  Crystalline solids.

Authors:  S R Vippagunta; H G Brittain; D J Grant
Journal:  Adv Drug Deliv Rev       Date:  2001-05-16       Impact factor: 15.470

2.  The mechanism of action of amtolmetin guacyl, a new gastroprotective nonsteroidal anti-inflammatory drug.

Authors:  E Tubaro; L Belogi; C M Mezzadri
Journal:  Eur J Pharmacol       Date:  2000-01-10       Impact factor: 4.432

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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