| Literature DB >> 21203148 |
Abstract
In the title compound, C(17)H(16)N(5)O, the central tetra-zine ring adopts an unsymmetrical boat conformation with the two C atoms as flagpoles. This compound can be considered as having homoaromaticity. The crystal structure is stabilized by inter-molecular C-H⋯O inter-actions between a benzene H atom and the carbonyl O atom.Entities:
Year: 2008 PMID: 21203148 PMCID: PMC2962064 DOI: 10.1107/S1600536808020199
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H16N5O | |
| Monoclinic, | Melting point = 378–380 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 742 reflections | |
| θ = 3.2–24.8º | |
| µ = 0.08 mm−1 | |
| β = 102.055 (6)º | |
| Prism, red | |
| 0.12 × 0.10 × 0.06 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 3116 independent reflections |
| Radiation source: fine-focus sealed tube | 1882 reflections with |
| Monochromator: graphite | |
| Detector resolution: 10.0 pixels mm-1 | θmax = 26.0º |
| θmin = 1.5º | |
| φ and ω scans | |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 6815 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.54 e Å−3 | |
| 3116 reflections | Δρmin = −0.31 e Å−3 |
| 226 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.031 (5) |
| Secondary atom site location: difference Fourier map |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O | 0.79549 (13) | 0.2358 (3) | 0.73526 (8) | 0.0685 (5) | |
| N1 | 0.82379 (14) | 0.4541 (3) | 0.64939 (9) | 0.0552 (5) | |
| N2 | 0.79315 (13) | 0.5181 (3) | 0.58485 (9) | 0.0522 (5) | |
| N3 | 0.88534 (17) | 0.8632 (4) | 0.61618 (12) | 0.0685 (6) | |
| N4 | 0.91853 (17) | 0.7948 (4) | 0.67409 (12) | 0.0724 (6) | |
| N5 | 0.68918 (15) | 0.2115 (4) | 0.63448 (10) | 0.0598 (6) | |
| H5N | 0.6759 (17) | 0.282 (4) | 0.5967 (12) | 0.054 (6)* | |
| C1 | 0.91906 (18) | 0.5354 (4) | 0.68427 (11) | 0.0587 (6) | |
| C2 | 0.83633 (17) | 0.7032 (4) | 0.56768 (11) | 0.0526 (6) | |
| C3 | 0.82173 (17) | 0.7755 (4) | 0.49788 (12) | 0.0542 (6) | |
| C4 | 0.77371 (19) | 0.6256 (5) | 0.44798 (12) | 0.0644 (7) | |
| H4 | 0.7490 | 0.4824 | 0.4592 | 0.077* | |
| C5 | 0.7624 (2) | 0.6873 (6) | 0.38197 (14) | 0.0813 (9) | |
| H5 | 0.7307 | 0.5853 | 0.3491 | 0.098* | |
| C6 | 0.7975 (2) | 0.8971 (6) | 0.36496 (16) | 0.0825 (9) | |
| H6 | 0.7889 | 0.9392 | 0.3205 | 0.099* | |
| C7 | 0.8452 (3) | 1.0452 (6) | 0.41287 (18) | 0.0876 (10) | |
| H7 | 0.8701 | 1.1870 | 0.4009 | 0.105* | |
| C8 | 0.8571 (2) | 0.9862 (5) | 0.47985 (15) | 0.0788 (8) | |
| H8 | 0.8889 | 1.0897 | 0.5123 | 0.095* | |
| C9 | 0.76906 (18) | 0.2904 (4) | 0.67787 (11) | 0.0535 (6) | |
| C10 | 0.61865 (18) | 0.0506 (4) | 0.64801 (11) | 0.0559 (6) | |
| C11 | 0.6437 (2) | −0.1223 (5) | 0.69669 (13) | 0.0724 (8) | |
| H11 | 0.7077 | −0.1329 | 0.7210 | 0.087* | |
| C12 | 0.5740 (3) | −0.2762 (6) | 0.70856 (15) | 0.0883 (10) | |
| H12 | 0.5905 | −0.3910 | 0.7412 | 0.106* | |
| C13 | 0.4807 (3) | −0.2619 (6) | 0.67292 (18) | 0.0928 (11) | |
| H13 | 0.4330 | −0.3646 | 0.6817 | 0.111* | |
| C14 | 0.4564 (2) | −0.0944 (6) | 0.62345 (16) | 0.0817 (9) | |
| H14 | 0.3926 | −0.0891 | 0.5987 | 0.098* | |
| C15 | 0.52429 (19) | 0.0652 (4) | 0.60974 (12) | 0.0601 (7) | |
| C16 | 1.00241 (18) | 0.4238 (5) | 0.65920 (13) | 0.0658 (7) | |
| H16A | 1.0013 | 0.2564 | 0.6656 | 0.099* | |
| H16B | 1.0636 | 0.4865 | 0.6832 | 0.099* | |
| H16C | 0.9955 | 0.4575 | 0.6128 | 0.099* | |
| C17 | 0.4969 (3) | 0.2482 (6) | 0.55605 (17) | 0.0790 (8) | |
| H17A | 0.431 (3) | 0.232 (5) | 0.5290 (16) | 0.102 (10)* | |
| H17B | 0.543 (2) | 0.223 (5) | 0.5212 (15) | 0.092 (9)* | |
| H17C | 0.511 (3) | 0.408 (7) | 0.5726 (16) | 0.107 (11)* |
| O | 0.0755 (12) | 0.0808 (13) | 0.0475 (10) | −0.0050 (9) | 0.0090 (8) | 0.0014 (7) |
| N1 | 0.0491 (11) | 0.0653 (12) | 0.0486 (10) | −0.0056 (10) | 0.0039 (8) | 0.0001 (8) |
| N2 | 0.0469 (11) | 0.0556 (11) | 0.0529 (11) | −0.0018 (9) | 0.0077 (8) | 0.0026 (8) |
| N3 | 0.0682 (14) | 0.0511 (12) | 0.0823 (15) | −0.0009 (10) | 0.0067 (12) | −0.0101 (10) |
| N4 | 0.0740 (15) | 0.0636 (14) | 0.0742 (15) | −0.0012 (11) | 0.0030 (12) | −0.0181 (11) |
| N5 | 0.0537 (12) | 0.0737 (14) | 0.0501 (12) | −0.0109 (10) | 0.0064 (10) | 0.0102 (9) |
| C1 | 0.0521 (15) | 0.0578 (14) | 0.0616 (14) | −0.0068 (12) | 0.0015 (11) | −0.0095 (10) |
| C2 | 0.0488 (13) | 0.0424 (12) | 0.0658 (14) | 0.0002 (11) | 0.0098 (11) | −0.0017 (9) |
| C3 | 0.0427 (13) | 0.0485 (13) | 0.0722 (15) | 0.0022 (10) | 0.0137 (11) | 0.0085 (10) |
| C4 | 0.0610 (16) | 0.0681 (16) | 0.0637 (15) | −0.0068 (13) | 0.0123 (12) | 0.0116 (11) |
| C5 | 0.0763 (19) | 0.101 (2) | 0.0649 (16) | −0.0060 (17) | 0.0117 (14) | 0.0133 (14) |
| C6 | 0.0736 (19) | 0.095 (2) | 0.0832 (19) | 0.0109 (18) | 0.0271 (16) | 0.0321 (17) |
| C7 | 0.094 (2) | 0.0653 (19) | 0.115 (3) | −0.0012 (17) | 0.047 (2) | 0.0308 (17) |
| C8 | 0.084 (2) | 0.0583 (17) | 0.098 (2) | −0.0070 (15) | 0.0271 (16) | 0.0097 (14) |
| C9 | 0.0520 (14) | 0.0604 (14) | 0.0484 (13) | 0.0014 (11) | 0.0111 (11) | −0.0033 (10) |
| C10 | 0.0597 (15) | 0.0570 (14) | 0.0548 (13) | −0.0092 (12) | 0.0210 (11) | −0.0027 (10) |
| C11 | 0.0846 (19) | 0.0703 (17) | 0.0646 (15) | −0.0100 (15) | 0.0209 (14) | 0.0082 (12) |
| C12 | 0.119 (3) | 0.080 (2) | 0.0732 (18) | −0.028 (2) | 0.035 (2) | 0.0027 (14) |
| C13 | 0.106 (3) | 0.089 (2) | 0.097 (2) | −0.042 (2) | 0.053 (2) | −0.0174 (18) |
| C14 | 0.0644 (18) | 0.090 (2) | 0.096 (2) | −0.0193 (16) | 0.0277 (16) | −0.0261 (17) |
| C15 | 0.0571 (16) | 0.0621 (15) | 0.0645 (14) | −0.0049 (12) | 0.0205 (12) | −0.0115 (11) |
| C16 | 0.0513 (15) | 0.0635 (16) | 0.0779 (16) | −0.0031 (12) | 0.0029 (12) | 0.0007 (11) |
| C17 | 0.064 (2) | 0.078 (2) | 0.087 (2) | 0.0031 (17) | −0.0032 (17) | −0.0037 (16) |
| O—C9 | 1.204 (3) | C7—C8 | 1.397 (4) |
| N1—N2 | 1.359 (3) | C7—H7 | 0.9300 |
| N1—C9 | 1.406 (3) | C8—H8 | 0.9300 |
| N1—C1 | 1.447 (3) | C10—C15 | 1.388 (4) |
| N2—C2 | 1.296 (3) | C10—C11 | 1.395 (4) |
| N3—N4 | 1.249 (3) | C11—C12 | 1.366 (4) |
| N3—C2 | 1.416 (3) | C11—H11 | 0.9300 |
| N4—C1 | 1.487 (3) | C12—C13 | 1.356 (5) |
| N5—C9 | 1.351 (3) | C12—H12 | 0.9300 |
| N5—C10 | 1.412 (3) | C13—C14 | 1.383 (5) |
| N5—H5N | 0.86 (2) | C13—H13 | 0.9300 |
| C1—C16 | 1.506 (3) | C14—C15 | 1.381 (4) |
| C2—C3 | 1.469 (3) | C14—H14 | 0.9300 |
| C3—C8 | 1.374 (4) | C15—C17 | 1.508 (4) |
| C3—C4 | 1.394 (4) | C16—H16A | 0.9600 |
| C4—C5 | 1.382 (4) | C16—H16B | 0.9600 |
| C4—H4 | 0.9300 | C16—H16C | 0.9600 |
| C5—C6 | 1.361 (4) | C17—H17A | 0.98 (4) |
| C5—H5 | 0.9300 | C17—H17B | 1.07 (3) |
| C6—C7 | 1.360 (5) | C17—H17C | 0.97 (4) |
| C6—H6 | 0.9300 | ||
| N2—N1—C9 | 119.9 (2) | O—C9—N5 | 127.3 (2) |
| N2—N1—C1 | 118.0 (2) | O—C9—N1 | 119.9 (2) |
| C9—N1—C1 | 121.7 (2) | N5—C9—N1 | 112.8 (2) |
| C2—N2—N1 | 114.5 (2) | C15—C10—C11 | 121.1 (2) |
| N4—N3—C2 | 120.2 (2) | C15—C10—N5 | 117.7 (2) |
| N3—N4—C1 | 115.6 (2) | C11—C10—N5 | 121.1 (2) |
| C9—N5—C10 | 126.5 (2) | C12—C11—C10 | 119.9 (3) |
| C9—N5—H5N | 115.8 (16) | C12—C11—H11 | 120.1 |
| C10—N5—H5N | 117.0 (16) | C10—C11—H11 | 120.1 |
| N1—C1—N4 | 105.6 (2) | C13—C12—C11 | 120.2 (3) |
| N1—C1—C16 | 112.9 (2) | C13—C12—H12 | 119.9 |
| N4—C1—C16 | 110.4 (2) | C11—C12—H12 | 119.9 |
| N2—C2—N3 | 120.7 (2) | C12—C13—C14 | 120.0 (3) |
| N2—C2—C3 | 121.1 (2) | C12—C13—H13 | 120.0 |
| N3—C2—C3 | 117.4 (2) | C14—C13—H13 | 120.0 |
| C8—C3—C4 | 118.4 (2) | C15—C14—C13 | 122.0 (3) |
| C8—C3—C2 | 121.6 (2) | C15—C14—H14 | 119.0 |
| C4—C3—C2 | 120.0 (2) | C13—C14—H14 | 119.0 |
| C5—C4—C3 | 120.7 (2) | C14—C15—C10 | 116.9 (2) |
| C5—C4—H4 | 119.7 | C14—C15—C17 | 121.5 (3) |
| C3—C4—H4 | 119.7 | C10—C15—C17 | 121.5 (2) |
| C6—C5—C4 | 120.2 (3) | C1—C16—H16A | 109.5 |
| C6—C5—H5 | 119.9 | C1—C16—H16B | 109.5 |
| C4—C5—H5 | 119.9 | H16A—C16—H16B | 109.5 |
| C7—C6—C5 | 120.1 (3) | C1—C16—H16C | 109.5 |
| C7—C6—H6 | 120.0 | H16A—C16—H16C | 109.5 |
| C5—C6—H6 | 120.0 | H16B—C16—H16C | 109.5 |
| C6—C7—C8 | 120.6 (3) | C15—C17—H17A | 114.5 (19) |
| C6—C7—H7 | 119.7 | C15—C17—H17B | 107.6 (16) |
| C8—C7—H7 | 119.7 | H17A—C17—H17B | 104 (2) |
| C3—C8—C7 | 120.1 (3) | C15—C17—H17C | 112.6 (19) |
| C3—C8—H8 | 120.0 | H17A—C17—H17C | 113 (3) |
| C7—C8—H8 | 120.0 | H17B—C17—H17C | 105 (3) |
| C9—N1—N2—C2 | 166.3 (2) | C4—C3—C8—C7 | −0.5 (4) |
| C1—N1—N2—C2 | −21.5 (3) | C2—C3—C8—C7 | 177.5 (3) |
| C2—N3—N4—C1 | 10.6 (3) | C6—C7—C8—C3 | 1.0 (5) |
| N2—N1—C1—N4 | 52.3 (3) | C10—N5—C9—O | 1.3 (4) |
| C9—N1—C1—N4 | −135.5 (2) | C10—N5—C9—N1 | −178.6 (2) |
| N2—N1—C1—C16 | −68.4 (3) | N2—N1—C9—O | −179.1 (2) |
| C9—N1—C1—C16 | 103.7 (2) | C1—N1—C9—O | 8.9 (3) |
| N3—N4—C1—N1 | −45.4 (3) | N2—N1—C9—N5 | 0.8 (3) |
| N3—N4—C1—C16 | 77.0 (3) | C1—N1—C9—N5 | −171.2 (2) |
| N1—N2—C2—N3 | −19.4 (3) | C9—N5—C10—C15 | 152.7 (2) |
| N1—N2—C2—C3 | 171.32 (19) | C9—N5—C10—C11 | −29.4 (4) |
| N4—N3—C2—N2 | 25.8 (3) | C15—C10—C11—C12 | −2.0 (4) |
| N4—N3—C2—C3 | −164.6 (2) | N5—C10—C11—C12 | −179.8 (2) |
| N2—C2—C3—C8 | 171.8 (2) | C10—C11—C12—C13 | 0.3 (4) |
| N3—C2—C3—C8 | 2.2 (3) | C11—C12—C13—C14 | 1.4 (5) |
| N2—C2—C3—C4 | −10.2 (4) | C12—C13—C14—C15 | −1.6 (5) |
| N3—C2—C3—C4 | −179.8 (2) | C13—C14—C15—C10 | 0.0 (4) |
| C8—C3—C4—C5 | 0.3 (4) | C13—C14—C15—C17 | −179.5 (3) |
| C2—C3—C4—C5 | −177.7 (2) | C11—C10—C15—C14 | 1.8 (3) |
| C3—C4—C5—C6 | −0.5 (4) | N5—C10—C15—C14 | 179.7 (2) |
| C4—C5—C6—C7 | 1.0 (5) | C11—C10—C15—C17 | −178.7 (3) |
| C5—C6—C7—C8 | −1.2 (5) | N5—C10—C15—C17 | −0.8 (3) |
| H··· | ||||
| C6—H6···Oi | 0.93 | 2.56 | 3.385 (3) | 148 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C6—H6⋯Oi | 0.93 | 2.56 | 3.385 (3) | 148 |
Symmetry code: (i) .