Literature DB >> 21203138

2-[3,4-Dibut-oxy-5-(5-phenyl-1,3,4-oxadiazol-2-yl)-2-thien-yl]-5-phenyl-1,3,4-oxadiazole.

Hai-Lin Li1, Hai-Su Zeng, Si-Shun Kang, Hai-Bo Wang.   

Abstract

In the title compound, C(28)H(28)N(4)O(4)S, the dihedral angles between the central thio-phene ring and its pendant oxadiazole rings are 1.2 (3) and 9.8 (3)°. The dihedral angles between the oxadiazole and phenyl rings are 2.9 (3) and 1.8 (3)°. Some short intra-molecular C-H⋯O contacts occur.

Entities:  

Year:  2008        PMID: 21203138      PMCID: PMC2962053          DOI: 10.1107/S1600536808020254

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bugatti et al. (2006 ▶); Brault et al. (2005 ▶).

Experimental

Crystal data

C28H28N4O4S M = 516.60 Monoclinic, a = 7.6770 (15) Å b = 16.871 (3) Å c = 20.398 (4) Å β = 93.77 (3)° V = 2636.2 (9) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 293 (2) K 0.30 × 0.10 × 0.05 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.953, T max = 0.992 5100 measured reflections 4722 independent reflections 1918 reflections with I > 2σ(I) R int = 0.026 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.087 wR(F 2) = 0.203 S = 1.00 4722 reflections 328 parameters 216 restraints H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808020254/hb2756sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808020254/hb2756Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H28N4O4SF000 = 1088
Mr = 516.60Dx = 1.302 Mg m3
Monoclinic, P21/cMelting point: 421 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 7.6770 (15) ÅCell parameters from 25 reflections
b = 16.871 (3) Åθ = 8–12º
c = 20.398 (4) ŵ = 0.16 mm1
β = 93.77 (3)ºT = 293 (2) K
V = 2636.2 (9) Å3Block, yellow
Z = 40.30 × 0.10 × 0.05 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.026
Radiation source: fine-focus sealed tubeθmax = 25.2º
Monochromator: graphiteθmin = 1.6º
T = 293(2) Kh = −9→9
ω/2θ scansk = 0→20
Absorption correction: ψ scan(North et al., 1968)l = 0→24
Tmin = 0.953, Tmax = 0.9923 standard reflections
5100 measured reflections every 200 reflections
4722 independent reflections intensity decay: none
1918 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.087H-atom parameters constrained
wR(F2) = 0.203  w = 1/[σ2(Fo2) + (0.05P)2 + 1.9P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4722 reflectionsΔρmax = 0.21 e Å3
328 parametersΔρmin = −0.19 e Å3
216 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.33758 (19)−0.11570 (10)0.45424 (7)0.0779 (5)
O10.1262 (5)0.0185 (3)0.57876 (19)0.0886 (13)
O20.1425 (5)−0.1444 (3)0.6260 (2)0.1014 (14)
O30.2220 (4)0.1120 (2)0.46996 (16)0.0660 (9)
O40.2964 (4)−0.2925 (2)0.58119 (17)0.0745 (10)
N10.3116 (6)0.1309 (3)0.3736 (2)0.0812 (13)
N20.3341 (6)0.0491 (3)0.3892 (2)0.0889 (14)
N30.3550 (7)−0.2952 (3)0.4784 (2)0.0961 (16)
N40.3787 (7)−0.3714 (3)0.5034 (3)0.1047 (17)
C10.3901 (9)0.1927 (4)0.6908 (3)0.117 (2)
H1B0.45300.21450.72890.176*
H1C0.35840.23460.66050.176*
H1D0.46250.15500.67020.176*
C20.2296 (10)0.1526 (4)0.7109 (4)0.123 (2)
H2A0.26390.11350.74420.147*
H2B0.15800.19170.73130.147*
C30.1260 (9)0.1145 (4)0.6610 (3)0.103 (2)
H3B0.08970.15410.62840.124*
H3C0.02130.09550.68010.124*
C40.2018 (10)0.0482 (4)0.6267 (4)0.124 (3)
H4A0.31490.06550.61360.148*
H4B0.22340.00620.65870.148*
C50.1109 (8)−0.0976 (4)0.8310 (3)0.110 (2)
H5A0.0177−0.06230.84060.165*
H5B0.2190−0.06880.83260.165*
H5C0.1189−0.13940.86290.165*
C60.0773 (10)−0.1303 (5)0.7676 (4)0.133 (3)
H6A0.0710−0.08470.73860.160*
H6B−0.0411−0.15030.76770.160*
C70.1689 (10)−0.1895 (4)0.7319 (3)0.121 (3)
H7A0.2515−0.21680.76200.145*
H7B0.0858−0.22820.71370.145*
C80.2609 (9)−0.1551 (4)0.6795 (3)0.0933 (19)
H8A0.3113−0.10460.69330.112*
H8B0.3544−0.18990.66790.112*
C90.1390 (10)0.4056 (5)0.4462 (4)0.121 (2)
H9A0.11990.45960.45120.146*
C100.2049 (9)0.3780 (4)0.3906 (3)0.106 (2)
H10A0.22780.41430.35790.127*
C110.2395 (8)0.3001 (4)0.3801 (3)0.0958 (19)
H11A0.28250.28330.34090.115*
C120.2091 (6)0.2467 (4)0.4291 (3)0.0761 (15)
C130.1422 (8)0.2760 (4)0.4859 (3)0.0948 (19)
H13A0.12410.24100.52000.114*
C140.1013 (9)0.3556 (5)0.4938 (4)0.112 (2)
H14A0.04940.37330.53100.134*
C150.2477 (6)0.1639 (4)0.4222 (3)0.0686 (14)
C160.2767 (6)0.0429 (4)0.4483 (3)0.0697 (14)
C170.2698 (6)−0.0266 (3)0.4849 (3)0.070
C180.1997 (7)−0.0394 (4)0.5486 (3)0.0780 (15)
C190.2193 (7)−0.1189 (4)0.5687 (3)0.0821 (16)
C200.2853 (7)−0.1688 (4)0.5252 (3)0.0726 (14)
C210.3116 (7)−0.2500 (4)0.5263 (3)0.0748 (15)
C220.3433 (7)−0.3675 (4)0.5646 (3)0.0733 (15)
C230.3445 (6)−0.4282 (4)0.6127 (3)0.0758 (15)
C240.3920 (8)−0.5050 (4)0.5971 (3)0.0933 (18)
H24A0.4189−0.51530.55410.112*
C250.4019 (8)−0.5676 (4)0.6419 (3)0.106 (2)
H25A0.4390−0.61780.63010.127*
C260.3544 (8)−0.5514 (4)0.7040 (3)0.099 (2)
H26A0.3560−0.59210.73480.119*
C270.3070 (8)−0.4807 (5)0.7213 (3)0.0974 (19)
H27A0.2774−0.47250.76420.117*
C280.2985 (8)−0.4146 (4)0.6764 (3)0.0991 (19)
H28A0.2635−0.36460.68960.119*
U11U22U33U12U13U23
S0.0735 (9)0.0961 (11)0.0650 (8)0.0052 (9)0.0125 (7)−0.0064 (9)
O10.079 (3)0.127 (4)0.063 (2)0.007 (3)0.025 (2)−0.022 (3)
O20.096 (3)0.123 (4)0.088 (3)−0.002 (3)0.025 (3)0.004 (3)
O30.055 (2)0.078 (2)0.066 (2)0.0061 (19)0.0101 (16)0.005 (2)
O40.073 (2)0.080 (3)0.071 (2)0.004 (2)0.0025 (18)−0.003 (2)
N10.067 (3)0.107 (4)0.070 (3)0.011 (3)0.004 (2)0.008 (3)
N20.081 (3)0.113 (4)0.074 (3)0.020 (3)0.011 (2)−0.009 (3)
N30.104 (4)0.097 (4)0.088 (3)0.016 (3)0.016 (3)0.011 (3)
N40.122 (4)0.103 (4)0.093 (3)0.013 (3)0.036 (3)−0.010 (3)
C10.120 (6)0.126 (6)0.107 (5)−0.018 (5)0.014 (4)−0.015 (5)
C20.140 (7)0.112 (6)0.117 (6)−0.013 (5)0.010 (5)−0.011 (5)
C30.105 (5)0.103 (5)0.102 (5)0.003 (4)0.010 (4)−0.020 (5)
C40.134 (7)0.107 (6)0.127 (7)0.011 (5)−0.019 (5)−0.012 (5)
C50.096 (5)0.122 (6)0.112 (5)0.004 (4)0.008 (4)−0.019 (5)
C60.145 (7)0.129 (7)0.128 (7)0.001 (6)0.028 (6)−0.002 (6)
C70.149 (7)0.128 (7)0.087 (5)0.006 (6)0.010 (5)0.010 (5)
C80.110 (5)0.094 (5)0.076 (4)−0.012 (4)0.007 (4)0.003 (4)
C90.132 (6)0.105 (5)0.127 (5)0.021 (4)0.002 (5)−0.011 (4)
C100.121 (5)0.097 (4)0.099 (4)−0.008 (4)0.003 (4)0.013 (4)
C110.100 (4)0.088 (4)0.103 (4)0.001 (4)0.027 (4)0.007 (4)
C120.049 (3)0.102 (4)0.076 (4)−0.014 (3)0.000 (3)−0.008 (3)
C130.096 (4)0.107 (4)0.082 (4)−0.015 (4)0.014 (3)−0.018 (4)
C140.112 (5)0.118 (5)0.105 (5)0.005 (4)0.010 (4)−0.028 (4)
C150.056 (3)0.087 (4)0.063 (3)−0.009 (3)0.014 (3)−0.009 (3)
C160.053 (3)0.087 (4)0.070 (3)0.001 (3)0.012 (3)0.006 (3)
C170.0700.0700.0700.0000.0050.000
C180.068 (4)0.086 (4)0.079 (4)−0.015 (3)0.001 (3)0.005 (3)
C190.072 (3)0.110 (4)0.067 (3)−0.004 (3)0.026 (3)0.002 (3)
C200.067 (3)0.089 (4)0.062 (3)0.005 (3)0.006 (3)0.005 (3)
C210.062 (3)0.093 (4)0.069 (4)0.006 (3)0.002 (3)0.000 (3)
C220.057 (3)0.081 (4)0.082 (4)0.012 (3)0.004 (3)−0.006 (3)
C230.052 (3)0.095 (4)0.082 (4)0.002 (3)0.016 (3)−0.001 (3)
C240.093 (4)0.101 (4)0.085 (4)0.006 (4)−0.002 (3)−0.002 (3)
C250.103 (5)0.100 (4)0.117 (5)−0.001 (4)0.026 (4)0.005 (4)
C260.085 (4)0.113 (5)0.098 (4)−0.003 (4)−0.005 (3)0.021 (4)
C270.086 (4)0.129 (5)0.078 (4)−0.011 (4)0.012 (3)0.010 (4)
C280.100 (4)0.102 (4)0.096 (4)−0.003 (4)0.018 (4)−0.003 (4)
S—C171.722 (5)C7—C81.442 (7)
S—C201.771 (5)C7—H7A0.9700
O1—C41.212 (7)C7—H7B0.9700
O1—C181.302 (6)C8—H8A0.9700
O2—C81.385 (6)C8—H8B0.9700
O2—C191.410 (6)C9—C141.331 (8)
O3—C161.325 (6)C9—C101.355 (8)
O3—C151.334 (6)C9—H9A0.9300
O4—C211.341 (6)C10—C111.361 (8)
O4—C221.365 (6)C10—H10A0.9300
N1—C151.264 (6)C11—C121.376 (7)
N1—N21.423 (6)C11—H11A0.9300
N2—C161.315 (6)C12—C131.389 (7)
N3—C211.300 (7)C12—C151.437 (8)
N3—N41.390 (6)C13—C141.391 (8)
N4—C221.296 (6)C13—H13A0.9300
C1—C21.487 (8)C14—H14A0.9300
C1—H1B0.9600C16—C171.392 (7)
C1—H1C0.9600C17—C181.455 (7)
C1—H1D0.9600C18—C191.408 (8)
C2—C31.406 (8)C19—C201.346 (7)
C2—H2A0.9700C20—C211.385 (7)
C2—H2B0.9700C22—C231.418 (7)
C3—C41.461 (8)C23—C281.387 (7)
C3—H3B0.9700C23—C241.390 (7)
C3—H3C0.9700C24—C251.395 (8)
C4—H4A0.9700C24—H24A0.9300
C4—H4B0.9700C25—C261.370 (8)
C5—C61.414 (8)C25—H25A0.9300
C5—H5A0.9600C26—C271.303 (8)
C5—H5B0.9600C26—H26A0.9300
C5—H5C0.9600C27—C281.442 (8)
C6—C71.445 (8)C27—H27A0.9300
C6—H6A0.9700C28—H28A0.9300
C6—H6B0.9700
C17—S—C2093.1 (3)C10—C9—H9A119.8
C4—O1—C18119.5 (6)C9—C10—C11123.3 (7)
C8—O2—C19113.8 (5)C9—C10—H10A118.3
C16—O3—C15105.6 (4)C11—C10—H10A118.3
C21—O4—C22104.5 (5)C10—C11—C12118.3 (7)
C15—N1—N2107.5 (5)C10—C11—H11A120.8
C16—N2—N1103.8 (5)C12—C11—H11A120.8
C21—N3—N4107.5 (5)C11—C12—C13117.6 (6)
C22—N4—N3106.0 (5)C11—C12—C15121.3 (6)
C2—C1—H1B109.5C13—C12—C15121.1 (6)
C2—C1—H1C109.5C12—C13—C14122.5 (7)
H1B—C1—H1C109.5C12—C13—H13A118.7
C2—C1—H1D109.5C14—C13—H13A118.7
H1B—C1—H1D109.5C9—C14—C13117.8 (7)
H1C—C1—H1D109.5C9—C14—H14A121.1
C3—C2—C1116.7 (6)C13—C14—H14A121.1
C3—C2—H2A108.1N1—C15—O3111.5 (5)
C1—C2—H2A108.1N1—C15—C12126.8 (6)
C3—C2—H2B108.1O3—C15—C12121.7 (5)
C1—C2—H2B108.1N2—C16—O3111.6 (5)
H2A—C2—H2B107.3N2—C16—C17125.9 (6)
C2—C3—C4118.2 (7)O3—C16—C17122.5 (5)
C2—C3—H3B107.8C16—C17—C18129.3 (5)
C4—C3—H3B107.8C16—C17—S121.1 (4)
C2—C3—H3C107.8C18—C17—S109.4 (4)
C4—C3—H3C107.8O1—C18—C19128.2 (5)
H3B—C3—H3C107.1O1—C18—C17120.5 (5)
O1—C4—C3121.2 (7)C19—C18—C17111.3 (6)
O1—C4—H4A107.0C20—C19—C18116.2 (5)
C3—C4—H4A107.0C20—C19—O2123.5 (6)
O1—C4—H4B107.0C18—C19—O2119.3 (5)
C3—C4—H4B107.0C19—C20—C21132.0 (6)
H4A—C4—H4B106.8C19—C20—S109.8 (5)
C6—C5—H5A109.5C21—C20—S118.2 (5)
C6—C5—H5B109.5N3—C21—O4110.7 (6)
H5A—C5—H5B109.5N3—C21—C20127.8 (6)
C6—C5—H5C109.5O4—C21—C20121.5 (6)
H5A—C5—H5C109.5N4—C22—O4111.2 (6)
H5B—C5—H5C109.5N4—C22—C23129.6 (6)
C5—C6—C7131.6 (7)O4—C22—C23119.1 (5)
C5—C6—H6A104.3C28—C23—C24117.1 (6)
C7—C6—H6A104.3C28—C23—C22122.6 (6)
C5—C6—H6B104.3C24—C23—C22120.3 (6)
C7—C6—H6B104.3C23—C24—C25124.1 (6)
H6A—C6—H6B105.6C23—C24—H24A118.0
C8—C7—C6111.9 (7)C25—C24—H24A118.0
C8—C7—H7A109.2C26—C25—C24116.7 (7)
C6—C7—H7A109.2C26—C25—H25A121.7
C8—C7—H7B109.2C24—C25—H25A121.7
C6—C7—H7B109.2C27—C26—C25121.9 (7)
H7A—C7—H7B107.9C27—C26—H26A119.1
O2—C8—C7108.0 (6)C25—C26—H26A119.1
O2—C8—H8A110.1C26—C27—C28122.6 (7)
C7—C8—H8A110.1C26—C27—H27A118.7
O2—C8—H8B110.1C28—C27—H27A118.7
C7—C8—H8B110.1C23—C28—C27117.6 (6)
H8A—C8—H8B108.4C23—C28—H28A121.2
C14—C9—C10120.3 (8)C27—C28—H28A121.2
C14—C9—H9A119.8
C15—N1—N2—C160.4 (6)C16—C17—C18—C19−179.6 (5)
C21—N3—N4—C221.7 (7)S—C17—C18—C194.3 (6)
C1—C2—C3—C463.0 (10)O1—C18—C19—C20173.6 (5)
C18—O1—C4—C3178.5 (6)C17—C18—C19—C20−4.5 (7)
C2—C3—C4—O1−172.1 (7)O1—C18—C19—O24.8 (9)
C5—C6—C7—C8−107.2 (9)C17—C18—C19—O2−173.3 (5)
C19—O2—C8—C7−173.6 (6)C8—O2—C19—C2087.0 (7)
C6—C7—C8—O2−81.9 (7)C8—O2—C19—C18−105.1 (6)
C14—C9—C10—C11−1.2 (12)C18—C19—C20—C21−175.3 (6)
C9—C10—C11—C12−1.3 (11)O2—C19—C20—C21−7.0 (10)
C10—C11—C12—C131.0 (9)C18—C19—C20—S2.5 (7)
C10—C11—C12—C15−178.0 (6)O2—C19—C20—S170.8 (4)
C11—C12—C13—C141.9 (9)C17—S—C20—C190.2 (4)
C15—C12—C13—C14−179.1 (6)C17—S—C20—C21178.3 (5)
C10—C9—C14—C134.0 (11)N4—N3—C21—O4−3.1 (7)
C12—C13—C14—C9−4.4 (10)N4—N3—C21—C20175.8 (5)
N2—N1—C15—O3−0.7 (6)C22—O4—C21—N33.2 (6)
N2—N1—C15—C12177.7 (5)C22—O4—C21—C20−175.8 (5)
C16—O3—C15—N10.7 (6)C19—C20—C21—N3170.1 (6)
C16—O3—C15—C12−177.7 (5)S—C20—C21—N3−7.5 (8)
C11—C12—C15—N10.4 (9)C19—C20—C21—O4−11.1 (10)
C13—C12—C15—N1−178.6 (5)S—C20—C21—O4171.3 (4)
C11—C12—C15—O3178.6 (5)N3—N4—C22—O40.3 (7)
C13—C12—C15—O3−0.4 (8)N3—N4—C22—C23179.2 (5)
N1—N2—C16—O30.1 (6)C21—O4—C22—N4−2.1 (6)
N1—N2—C16—C17179.2 (5)C21—O4—C22—C23178.9 (5)
C15—O3—C16—N2−0.4 (6)N4—C22—C23—C28−178.3 (6)
C15—O3—C16—C17−179.6 (5)O4—C22—C23—C280.5 (8)
N2—C16—C17—C18−176.2 (5)N4—C22—C23—C241.3 (9)
O3—C16—C17—C182.9 (9)O4—C22—C23—C24−179.9 (5)
N2—C16—C17—S−0.5 (8)C28—C23—C24—C25−2.4 (9)
O3—C16—C17—S178.5 (4)C22—C23—C24—C25178.0 (6)
C20—S—C17—C16−179.0 (5)C23—C24—C25—C262.7 (10)
C20—S—C17—C18−2.6 (4)C24—C25—C26—C27−1.9 (10)
C4—O1—C18—C1974.6 (9)C25—C26—C27—C280.9 (11)
C4—O1—C18—C17−107.4 (7)C24—C23—C28—C271.1 (8)
C16—C17—C18—O12.1 (9)C22—C23—C28—C27−179.2 (5)
S—C17—C18—O1−174.0 (4)C26—C27—C28—C23−0.5 (10)
D—H···AD—HH···AD···AD—H···A
C6—H6A···O20.972.602.973 (9)103
C8—H8B···O40.972.493.089 (7)120
C13—H13A···O30.932.542.857 (8)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6A⋯O20.972.602.973 (9)103
C8—H8B⋯O40.972.493.089 (7)120
C13—H13A⋯O30.932.542.857 (8)100
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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Eur J Med Chem       Date:  2005-04-12       Impact factor: 6.514

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1.  Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations.

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