Literature DB >> 21203083

Triaqua-(3-carb-oxy-5-sulfonatobenzoato-κO)(1,10-phenanthroline-κN,N')cobalt(II) monohydrate.

Bing-Yu Zhang1, Jing-Jing Nie, Duan-Jun Xu.   

Abstract

In the title compound, [Co(C(8)H(4)O(7)S)(C(12)H(8)N(2))(H(2)O)(3)]·H(2)O, the Co(II) cation is coordinated by one sulfoisophthalate dianion, one bidentate phenathroline (phen) mol-ecule and three water mol-ecules in a distorted cis-CoN(2)O(4) octa-hedral geometry. In the crystal structure, aromatic π-π stacking occurs [centroid-centroid distances 3.7630 (14) and 3.7269 (15) Å], as well as an extensive O-H⋯O and C-H⋯O hydrogen-bonding network.

Entities:  

Year:  2008        PMID: 21203083      PMCID: PMC2961914          DOI: 10.1107/S1600536808019843

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Li et al. (2005 ▶); Liu et al. (2006 ▶).

Experimental

Crystal data

[Co(C8H4O7S)(C12H8N2)(H2O)3]·H2O M = 555.37 Monoclinic, a = 10.9968 (13) Å b = 13.9358 (18) Å c = 15.870 (2) Å β = 109.645 (14)° V = 2290.4 (5) Å3 Z = 4 Mo Kα radiation μ = 0.91 mm−1 T = 295 (2) K 0.36 × 0.24 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.740, T max = 0.835 25103 measured reflections 4490 independent reflections 3416 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.095 S = 1.06 4490 reflections 316 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.28 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019843/hb2753sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019843/hb2753Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C8H4O7S)(C12H8N2)(H2O)3]·H2OF000 = 1140
Mr = 555.37Dx = 1.611 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6846 reflections
a = 10.9968 (13) Åθ = 2.0–25.0º
b = 13.9358 (18) ŵ = 0.91 mm1
c = 15.870 (2) ÅT = 295 (2) K
β = 109.645 (14)ºPrism, red
V = 2290.4 (5) Å30.36 × 0.24 × 0.20 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer4490 independent reflections
Radiation source: fine-focus sealed tube3416 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.051
Detector resolution: 10.0 pixels mm-1θmax = 26.0º
T = 295(2) Kθmin = 2.0º
ω scansh = −13→13
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)k = −17→16
Tmin = 0.740, Tmax = 0.835l = −18→19
25103 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.095  w = 1/[σ2(Fo2) + (0.0494P)2 + 0.1783P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4490 reflectionsΔρmax = 0.40 e Å3
316 parametersΔρmin = −0.28 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co0.32537 (3)0.13651 (2)0.35952 (2)0.03134 (12)
S0.05040 (5)0.06815 (4)0.78134 (4)0.03161 (16)
N10.52786 (18)0.12769 (13)0.38882 (13)0.0321 (4)
N20.3431 (2)0.14723 (15)0.22955 (13)0.0387 (5)
O10.32643 (15)0.12435 (12)0.48995 (11)0.0367 (4)
O20.11757 (17)0.14036 (17)0.47225 (13)0.0674 (7)
O30.63866 (15)0.09338 (13)0.80484 (11)0.0418 (4)
O40.55844 (17)0.09929 (17)0.91585 (12)0.0585 (6)
H4A0.63920.09660.95950.088*
O50.30048 (15)−0.01239 (12)0.33733 (11)0.0386 (4)
H5A0.2252−0.03450.32410.058*
H5B0.3245−0.03520.29500.058*
O60.35517 (15)0.28948 (12)0.38099 (11)0.0388 (4)
H6A0.29230.31080.34200.058*
H6B0.41970.31110.36940.058*
O70.12326 (15)0.16385 (12)0.31242 (11)0.0405 (4)
H7A0.10990.15880.36290.061*
H7B0.07420.12780.27340.061*
O110.05105 (16)−0.03233 (12)0.80684 (11)0.0435 (4)
O120.07483 (16)0.13193 (13)0.85730 (12)0.0444 (5)
O13−0.06484 (15)0.09361 (14)0.70756 (12)0.0465 (5)
O1W0.7986 (2)0.1114 (2)1.02278 (15)0.0893 (9)
H1A0.85960.13800.99850.134*
H1B0.85760.07941.07410.134*
C10.6184 (2)0.11688 (18)0.46861 (17)0.0395 (6)
H10.59290.10650.51810.047*
C20.7504 (3)0.12047 (19)0.4809 (2)0.0488 (7)
H20.81080.11210.53770.059*
C30.7901 (2)0.13620 (18)0.4096 (2)0.0482 (7)
H30.87770.13960.41750.058*
C40.6977 (2)0.14729 (16)0.32399 (19)0.0393 (6)
C50.7295 (3)0.16124 (19)0.2445 (2)0.0497 (7)
H50.81560.16610.24860.060*
C60.6364 (3)0.16742 (19)0.1640 (2)0.0527 (8)
H60.65970.17610.11340.063*
C70.5023 (3)0.16096 (18)0.15414 (18)0.0446 (7)
C80.4010 (3)0.1641 (2)0.07230 (19)0.0596 (8)
H80.41910.17080.01940.071*
C90.2766 (3)0.1574 (2)0.0696 (2)0.0637 (9)
H90.20940.15780.01510.076*
C100.2509 (3)0.1500 (2)0.14981 (19)0.0537 (8)
H100.16530.14680.14730.064*
C110.4678 (2)0.15056 (17)0.23164 (17)0.0349 (6)
C120.5665 (2)0.14201 (16)0.31698 (16)0.0323 (5)
C130.2328 (2)0.12619 (17)0.51846 (16)0.0348 (6)
C140.2602 (2)0.10967 (16)0.61750 (15)0.0305 (5)
C150.1576 (2)0.09694 (17)0.64978 (16)0.0320 (5)
H150.07310.09710.61020.038*
C160.1814 (2)0.08409 (16)0.74032 (15)0.0293 (5)
C170.3073 (2)0.08407 (16)0.80040 (16)0.0317 (5)
H170.32260.07590.86130.038*
C180.4098 (2)0.09629 (17)0.76915 (15)0.0312 (5)
C190.3862 (2)0.10878 (17)0.67763 (16)0.0313 (5)
H190.45510.11650.65670.038*
C200.5461 (2)0.09713 (18)0.83179 (16)0.0351 (6)
U11U22U33U12U13U23
Co0.02507 (18)0.0439 (2)0.0262 (2)−0.00116 (13)0.01016 (14)0.00125 (14)
S0.0246 (3)0.0425 (3)0.0300 (3)−0.0027 (2)0.0122 (3)−0.0003 (3)
N10.0287 (10)0.0399 (11)0.0287 (11)0.0004 (8)0.0110 (9)0.0012 (9)
N20.0379 (12)0.0501 (13)0.0271 (12)0.0012 (10)0.0095 (10)0.0028 (9)
O10.0289 (9)0.0581 (11)0.0255 (9)0.0008 (7)0.0122 (7)0.0025 (8)
O20.0307 (10)0.141 (2)0.0324 (11)0.0098 (11)0.0125 (9)0.0141 (12)
O30.0264 (9)0.0628 (11)0.0378 (10)−0.0036 (8)0.0130 (8)−0.0111 (9)
O40.0326 (10)0.1136 (17)0.0280 (10)−0.0016 (11)0.0086 (8)−0.0058 (11)
O50.0324 (9)0.0489 (10)0.0370 (10)−0.0058 (7)0.0149 (8)−0.0054 (8)
O60.0271 (8)0.0478 (10)0.0438 (10)0.0009 (7)0.0149 (8)0.0058 (8)
O70.0306 (9)0.0577 (11)0.0318 (10)−0.0018 (8)0.0085 (8)−0.0016 (8)
O110.0412 (10)0.0457 (10)0.0476 (11)−0.0046 (8)0.0205 (9)0.0054 (9)
O120.0374 (10)0.0588 (12)0.0421 (11)−0.0031 (8)0.0200 (9)−0.0150 (9)
O130.0248 (9)0.0721 (13)0.0401 (11)−0.0009 (8)0.0077 (8)0.0100 (9)
O1W0.0410 (12)0.174 (3)0.0463 (14)−0.0109 (14)0.0059 (10)0.0314 (15)
C10.0319 (13)0.0495 (15)0.0355 (15)0.0006 (11)0.0093 (12)0.0020 (12)
C20.0343 (14)0.0544 (17)0.0490 (18)0.0024 (12)0.0025 (13)0.0004 (14)
C30.0264 (13)0.0477 (16)0.071 (2)0.0014 (11)0.0164 (14)−0.0012 (14)
C40.0380 (14)0.0310 (13)0.0588 (18)0.0015 (10)0.0291 (14)0.0002 (12)
C50.0503 (17)0.0424 (16)0.072 (2)0.0004 (13)0.0416 (17)−0.0008 (14)
C60.077 (2)0.0411 (15)0.064 (2)0.0034 (14)0.0561 (19)0.0034 (14)
C70.0640 (19)0.0398 (15)0.0406 (16)0.0052 (13)0.0316 (15)0.0040 (12)
C80.089 (3)0.063 (2)0.0345 (17)0.0117 (18)0.0306 (17)0.0098 (14)
C90.078 (2)0.078 (2)0.0265 (16)0.0079 (18)0.0057 (16)0.0064 (15)
C100.0482 (17)0.072 (2)0.0343 (16)0.0018 (15)0.0059 (14)0.0050 (14)
C110.0438 (15)0.0335 (13)0.0340 (14)0.0020 (10)0.0217 (12)0.0021 (10)
C120.0350 (13)0.0287 (12)0.0389 (15)−0.0009 (10)0.0199 (12)−0.0017 (10)
C130.0285 (13)0.0493 (15)0.0285 (13)−0.0020 (11)0.0123 (11)0.0011 (11)
C140.0306 (12)0.0347 (12)0.0286 (13)−0.0025 (10)0.0132 (11)−0.0027 (10)
C150.0261 (12)0.0389 (13)0.0317 (13)−0.0010 (10)0.0108 (10)−0.0026 (11)
C160.0277 (12)0.0329 (12)0.0305 (13)−0.0019 (9)0.0139 (10)−0.0022 (10)
C170.0305 (12)0.0397 (14)0.0276 (13)−0.0024 (10)0.0134 (11)−0.0007 (10)
C180.0287 (12)0.0345 (12)0.0298 (13)−0.0038 (10)0.0089 (10)−0.0022 (10)
C190.0270 (12)0.0401 (13)0.0320 (13)−0.0019 (10)0.0166 (10)−0.0016 (11)
C200.0269 (12)0.0452 (14)0.0328 (14)−0.0028 (11)0.0096 (11)−0.0012 (11)
Co—O12.0730 (16)C2—C31.361 (4)
Co—O52.1070 (17)C2—H20.9300
Co—O62.1663 (17)C3—C41.405 (4)
Co—O72.1277 (16)C3—H30.9300
Co—N12.1198 (19)C4—C121.411 (3)
Co—N22.141 (2)C4—C51.431 (4)
S—O111.4569 (18)C5—C61.345 (4)
S—O121.4482 (18)C5—H50.9300
S—O131.4509 (17)C6—C71.432 (4)
S—C161.783 (2)C6—H60.9300
N1—C11.330 (3)C7—C81.399 (4)
N1—C121.359 (3)C7—C111.411 (3)
N2—C101.330 (3)C8—C91.357 (4)
N2—C111.361 (3)C8—H80.9300
O1—C131.257 (3)C9—C101.398 (4)
O2—C131.248 (3)C9—H90.9300
O3—C201.231 (3)C10—H100.9300
O4—C201.295 (3)C11—C121.428 (3)
O4—H4A0.9257C13—C141.515 (3)
O5—H5A0.8416C14—C191.393 (3)
O5—H5B0.8608C14—C151.399 (3)
O6—H6A0.8129C15—C161.383 (3)
O6—H6B0.8463C15—H150.9300
O7—H7A0.8645C16—C171.392 (3)
O7—H7B0.8385C17—C181.386 (3)
O1W—H1A0.9530C17—H170.9300
O1W—H1B0.9630C18—C191.398 (3)
C1—C21.399 (4)C18—C201.495 (3)
C1—H10.9300C19—H190.9300
O1—Co—O592.48 (6)C12—C4—C5118.9 (3)
O1—Co—N197.09 (7)C6—C5—C4120.8 (3)
O5—Co—N192.72 (7)C6—C5—H5119.6
O1—Co—O791.14 (6)C4—C5—H5119.6
O5—Co—O793.21 (6)C5—C6—C7121.8 (3)
N1—Co—O7169.64 (7)C5—C6—H6119.1
O1—Co—N2174.74 (7)C7—C6—H6119.1
O5—Co—N287.51 (7)C8—C7—C11116.7 (3)
N1—Co—N277.66 (8)C8—C7—C6124.7 (3)
O7—Co—N294.11 (7)C11—C7—C6118.7 (3)
O1—Co—O688.49 (6)C9—C8—C7120.5 (3)
O5—Co—O6178.49 (6)C9—C8—H8119.8
N1—Co—O686.00 (6)C7—C8—H8119.8
O7—Co—O687.93 (6)C8—C9—C10119.1 (3)
N2—Co—O691.43 (7)C8—C9—H9120.4
O12—S—O13112.88 (11)C10—C9—H9120.4
O12—S—O11112.12 (11)N2—C10—C9123.1 (3)
O13—S—O11112.37 (11)N2—C10—H10118.5
O12—S—C16106.31 (11)C9—C10—H10118.5
O13—S—C16105.58 (11)N2—C11—C7123.1 (2)
O11—S—C16106.98 (10)N2—C11—C12117.3 (2)
C1—N1—C12118.0 (2)C7—C11—C12119.6 (2)
C1—N1—Co127.59 (17)N1—C12—C4122.8 (2)
C12—N1—Co114.17 (15)N1—C12—C11117.1 (2)
C10—N2—C11117.5 (2)C4—C12—C11120.1 (2)
C10—N2—Co129.16 (19)O2—C13—O1125.8 (2)
C11—N2—Co113.33 (16)O2—C13—C14116.3 (2)
C13—O1—Co128.88 (16)O1—C13—C14118.0 (2)
C20—O4—H4A120.8C19—C14—C15119.1 (2)
Co—O5—H5A117.7C19—C14—C13121.1 (2)
Co—O5—H5B116.0C15—C14—C13119.7 (2)
H5A—O5—H5B101.8C16—C15—C14120.2 (2)
Co—O6—H6A101.2C16—C15—H15119.9
Co—O6—H6B114.2C14—C15—H15119.9
H6A—O6—H6B105.4C15—C16—C17120.6 (2)
Co—O7—H7A98.2C15—C16—S120.11 (17)
Co—O7—H7B119.3C17—C16—S119.32 (17)
H7A—O7—H7B111.6C18—C17—C16119.7 (2)
H1A—O1W—H1B99.1C18—C17—H17120.1
N1—C1—C2122.5 (2)C16—C17—H17120.1
N1—C1—H1118.7C17—C18—C19119.9 (2)
C2—C1—H1118.7C17—C18—C20121.2 (2)
C3—C2—C1119.8 (3)C19—C18—C20119.0 (2)
C3—C2—H2120.1C14—C19—C18120.5 (2)
C1—C2—H2120.1C14—C19—H19119.8
C2—C3—C4119.5 (2)C18—C19—H19119.8
C2—C3—H3120.3O3—C20—O4123.1 (2)
C4—C3—H3120.3O3—C20—C18122.0 (2)
C3—C4—C12117.3 (2)O4—C20—C18114.8 (2)
C3—C4—C5123.8 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1A···O6i0.952.112.881 (3)137
O1W—H1B···O11ii0.961.932.873 (3)165
O4—H4A···O1W0.931.712.621 (3)166
O5—H5A···O13iii0.841.862.695 (3)175
O5—H5B···O3iv0.861.942.798 (2)174
O6—H6A···O3v0.812.082.803 (2)149
O6—H6B···O12vi0.851.952.790 (3)173
O7—H7A···O20.861.732.579 (3)168
O7—H7B···O11iii0.842.032.859 (2)172
C1—H1···O5iv0.932.563.249 (3)131
C2—H2···O13vii0.932.593.506 (4)167
C3—H3···O2vii0.932.483.399 (3)168
C6—H6···O1Wviii0.932.593.391 (4)145
C9—H9···O12viii0.932.473.373 (4)164
Table 1

Selected bond lengths (Å)

Co—O12.0730 (16)
Co—O52.1070 (17)
Co—O62.1663 (17)
Co—O72.1277 (16)
Co—N12.1198 (19)
Co—N22.141 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1A⋯O6i0.952.112.881 (3)137
O1W—H1B⋯O11ii0.961.932.873 (3)165
O4—H4A⋯O1W0.931.712.621 (3)166
O5—H5A⋯O13iii0.841.862.695 (3)175
O5—H5B⋯O3iv0.861.942.798 (2)174
O6—H6A⋯O3v0.812.082.803 (2)149
O6—H6B⋯O12vi0.851.952.790 (3)173
O7—H7A⋯O20.861.732.579 (3)168
O7—H7B⋯O11iii0.842.032.859 (2)172
C1—H1⋯O5iv0.932.563.249 (3)131
C2—H2⋯O13vii0.932.593.506 (4)167
C3—H3⋯O2vii0.932.483.399 (3)168
C6—H6⋯O1Wviii0.932.593.391 (4)145
C9—H9⋯O12viii0.932.473.373 (4)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[bis[aqua(1,10-phenanthroline)lead(II)]-di-mu3-5-carboxy-3-sulfonatobenzoato] dihydrate].

Authors:  Mao Lin Hu; Xin Hua Li; Hong Ping Xiao; Qiao Zhang
Journal:  Acta Crystallogr C       Date:  2005-02-12       Impact factor: 1.172

  2 in total
  3 in total

1.  Poly[octa-μ-aqua-tetra-aqua-bis(μ-5-sul-fon-atobenzene-1,3-dicarboxyl-ato)cobalt(II)tetra-sodium].

Authors:  Bing-Yu Zhang; Jing-Jing Nie; Duan-Jun Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

2.  Tetra-aqua-(2,2'-bipyridine-κN,N')manganese(II) di-μ-aqua-bis-[aqua-(2,2'-bipyridine-κN,N')(5-sulfonatoisophthalato-κO)manganate(II)] tetra-hydrate.

Authors:  Bing-Yu Zhang; Jing-Jing Nie; Duan-Jun Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

3.  Triaqua-(cyclo-hex-4-ene-1,2-dicarboxyl-ato-κO(1))(1,10-phenanthroline-κ(2)N,N')cobalt(II).

Authors:  Hai-Ye Li; Cheng Wang; Fu-Ping Huang; Yi-Min Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20
  3 in total

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