Literature DB >> 21203067

Monoclinic polymorph of trans-tetra-aquabis-[(4-pyridylsulfanyl)-acetato-κN]cobalt(II).

Dušan Mikloš, Jozef Miklovič, Jan Moncol, Peter Segľa, Marian Koman.   

Abstract

The crystal structure of the title compound, [n class="Chemical">Co(C(7)H(6)NO(2)S)(2)(H(2)O)(4)], is a polymorph of the structure first reported by Du, Zhao & Wang [(2004). Dalton Trans, pp. 2065-2072]. The asymmetric unit of the title compound contains one half-mol-ecule; the Co(II) atom lies on an inversion centre in a distorted octa-hedral geometry coordinated by two N atoms of the pyridine rings of the 4-pyridylthio-acetate anions and four O atoms of water mol-ecules. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules, forming a three-dimensional network.

Entities:  

Year:  2008        PMID: 21203067      PMCID: PMC2961997          DOI: 10.1107/S1600536808023593

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bernstein et al. (1995 ▶); Chiang et al. (1993 ▶); Du et al. (2004 ▶); Du & Li (2006 ▶); Kondo et al. (2002 ▶); For related structures, see: Fang et al. (2004 ▶); Zhang et al. (2004 ▶).

Experimental

Crystal data

[Co(n class="CellLine">C7H6NO2S)2(H2O)4] M = 467.37 Monoclinic, a = 12.173 (1) Å b = 10.479 (1) Å c = 7.523 (2) Å β = 106.78 (3)° V = 918.8 (3) Å3 Z = 2 Mo Kα radiation μ = 1.21 mm−1 T = 293 (2) K 0.45 × 0.40 × 0.30 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (XEMP; Siemens, 1994 ▶) T min = 0.608, T max = 0.684 3491 measured reflections 2651 independent reflections 2283 reflections with I > 2σ(I) R int = 0.024 3 standard reflections every 97 reflections intensity decay: 2.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.102 S = 1.37 2651 reflections 125 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.37 e Å−3 Data collection: XSCANS (Siemens, 1994 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: enCIFer (Allen et al. 2004 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023593/ez2135sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023593/ez2135Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H6NO2S)2(H2O)4]F000 = 482
Mr = 467.37Dx = 1.689 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 12.173 (1) Åθ = 1.7–7.9º
b = 10.479 (1) ŵ = 1.21 mm1
c = 7.523 (2) ÅT = 293 (2) K
β = 106.78 (3)ºBlock, pink
V = 918.8 (3) Å30.45 × 0.40 × 0.30 mm
Z = 2
Siemens P4 diffractometerRint = 0.024
Radiation source: fine-focus sealed tubeθmax = 30.0º
Monochromator: graphiteθmin = 1.8º
T = 293(2) Kh = −17→16
2θ/ω scansk = −14→1
Absorption correction: ψ scan(XEMP; Siemens, 1994)l = −1→10
Tmin = 0.608, Tmax = 0.6843 standard reflections
3491 measured reflections every 97 reflections
2651 independent reflections intensity decay: 2.0%
2283 reflections with I > 2σ(I)
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.032  w = 1/[σ2(Fo2) + (0.0291P)2 + 0.3487P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.102(Δ/σ)max = 0.001
S = 1.37Δρmax = 0.41 e Å3
2651 reflectionsΔρmin = −0.37 e Å3
125 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.073 (6)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.00000.01988 (13)
S11.03489 (4)0.69603 (5)0.41990 (8)0.03026 (16)
O11.27843 (14)0.69566 (16)0.5784 (2)0.0379 (4)
O21.32163 (14)0.52026 (19)0.4432 (3)0.0413 (4)
O1W0.56051 (12)0.31434 (14)0.0783 (2)0.0303 (3)
H1W0.59520.27900.01350.046*
H2W0.59960.31140.18710.046*
O2W0.48936 (14)0.5278 (2)0.2660 (2)0.0386 (4)
H3W0.54700.51690.35360.058*
H4W0.43000.52670.29670.058*
N10.67362 (13)0.57244 (16)0.0968 (2)0.0246 (3)
C11.25327 (16)0.6025 (2)0.4709 (3)0.0294 (4)
C21.12871 (16)0.5827 (2)0.3577 (3)0.0296 (4)
H2A1.10510.49690.37820.036*
H2B1.12230.59150.22670.036*
C30.76428 (16)0.50244 (19)0.0894 (3)0.0249 (4)
H30.75080.42740.02050.030*
C40.87692 (16)0.5353 (2)0.1785 (3)0.0257 (4)
H40.93690.48340.16860.031*
C50.89935 (15)0.64675 (19)0.2828 (3)0.0228 (4)
C60.80572 (17)0.7236 (2)0.2835 (3)0.0305 (4)
H60.81710.80140.34580.037*
C70.69607 (17)0.6831 (2)0.1909 (3)0.0314 (5)
H70.63460.73500.19380.038*
U11U22U33U12U13U23
Co10.01396 (18)0.0244 (2)0.02025 (19)0.00132 (12)0.00333 (12)−0.00054 (13)
S10.0187 (2)0.0350 (3)0.0329 (3)−0.00349 (18)0.00085 (18)−0.0080 (2)
O10.0261 (7)0.0401 (9)0.0392 (9)−0.0061 (7)−0.0036 (6)0.0038 (7)
O20.0210 (7)0.0621 (12)0.0403 (9)0.0061 (7)0.0078 (6)0.0027 (8)
O1W0.0248 (7)0.0294 (7)0.0337 (8)0.0049 (6)0.0034 (6)0.0022 (6)
O2W0.0234 (7)0.0702 (12)0.0225 (7)0.0067 (7)0.0068 (6)−0.0021 (7)
N10.0169 (7)0.0273 (8)0.0281 (8)0.0001 (6)0.0041 (6)−0.0015 (6)
C10.0168 (8)0.0434 (12)0.0263 (9)−0.0039 (8)0.0034 (7)0.0109 (9)
C20.0172 (8)0.0392 (11)0.0297 (10)0.0010 (7)0.0026 (7)−0.0015 (8)
C30.0189 (8)0.0261 (9)0.0287 (9)−0.0022 (7)0.0049 (7)−0.0042 (8)
C40.0169 (8)0.0272 (9)0.0317 (10)0.0009 (7)0.0050 (7)−0.0023 (8)
C50.0173 (8)0.0266 (9)0.0230 (8)−0.0013 (6)0.0033 (6)0.0005 (7)
C60.0226 (9)0.0286 (10)0.0382 (11)−0.0003 (7)0.0053 (8)−0.0108 (8)
C70.0197 (9)0.0307 (10)0.0416 (12)0.0037 (7)0.0053 (8)−0.0067 (9)
Co1—O2Wi2.0632 (16)N1—C31.340 (2)
Co1—O2W2.0632 (16)N1—C71.345 (3)
Co1—O1Wi2.1034 (15)C1—C21.524 (3)
Co1—O1W2.1034 (15)C2—H2A0.9700
Co1—N1i2.1644 (16)C2—H2B0.9700
Co1—N12.1644 (16)C3—C41.385 (3)
S1—C51.7523 (19)C3—H30.9300
S1—C21.800 (2)C4—C51.389 (3)
O1—C11.248 (3)C4—H40.9300
O2—C11.257 (3)C5—C61.397 (3)
O1W—H1W0.8200C6—C71.382 (3)
O1W—H2W0.8200C6—H60.9300
O2W—H3W0.8200C7—H70.9300
O2W—H4W0.8200
O2Wi—Co1—O2W180.0O1—C1—O2126.42 (19)
O2Wi—Co1—O1Wi88.52 (7)O1—C1—C2119.1 (2)
O2W—Co1—O1Wi91.48 (7)O2—C1—C2114.4 (2)
O2Wi—Co1—O1W91.48 (7)C1—C2—S1111.63 (16)
O2W—Co1—O1W88.52 (7)C1—C2—H2A109.3
O1Wi—Co1—O1W180.0S1—C2—H2A109.3
O2Wi—Co1—N1i87.28 (7)C1—C2—H2B109.3
O2W—Co1—N1i92.72 (7)S1—C2—H2B109.3
O1Wi—Co1—N1i90.07 (6)H2A—C2—H2B108.0
O1W—Co1—N1i89.93 (6)N1—C3—C4123.78 (18)
O2Wi—Co1—N192.72 (7)N1—C3—H3118.1
O2W—Co1—N187.28 (7)C4—C3—H3118.1
O1Wi—Co1—N189.93 (6)C3—C4—C5119.23 (18)
O1W—Co1—N190.07 (6)C3—C4—H4120.4
N1i—Co1—N1180.0C5—C4—H4120.4
C5—S1—C2102.29 (10)C4—C5—C6117.35 (17)
Co1—O1W—H1W116.8C4—C5—S1125.34 (15)
Co1—O1W—H2W111.7C6—C5—S1117.27 (15)
H1W—O1W—H2W109.0C7—C6—C5119.40 (19)
Co1—O2W—H3W118.7C7—C6—H6120.3
Co1—O2W—H4W125.3C5—C6—H6120.3
H3W—O2W—H4W113.0N1—C7—C6123.38 (18)
C3—N1—C7116.71 (16)N1—C7—H7118.3
C3—N1—Co1122.00 (13)C6—C7—H7118.3
C7—N1—Co1120.65 (13)
O2Wi—Co1—N1—C3−59.79 (17)Co1—N1—C3—C4−168.13 (16)
O2W—Co1—N1—C3120.21 (17)N1—C3—C4—C50.2 (3)
O1Wi—Co1—N1—C3−148.31 (17)C3—C4—C5—C6−3.3 (3)
O1W—Co1—N1—C331.69 (17)C3—C4—C5—S1174.30 (16)
O2Wi—Co1—N1—C7129.63 (17)C2—S1—C5—C48.6 (2)
O2W—Co1—N1—C7−50.37 (17)C2—S1—C5—C6−173.75 (17)
O1Wi—Co1—N1—C741.12 (17)C4—C5—C6—C73.5 (3)
O1W—Co1—N1—C7−138.88 (17)S1—C5—C6—C7−174.29 (18)
O1—C1—C2—S1−5.4 (3)C3—N1—C7—C6−2.6 (3)
O2—C1—C2—S1175.01 (16)Co1—N1—C7—C6168.50 (19)
C5—S1—C2—C1−176.55 (15)C5—C6—C7—N1−0.6 (4)
C7—N1—C3—C42.8 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O1ii0.822.052.849 (2)163
O1W—H2W···O1iii0.821.952.757 (2)167
O2W—H3W···O2iii0.821.912.725 (2)176
O2W—H4W···O2iv0.821.952.743 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O1i0.822.052.849 (2)163
O1W—H2W⋯O1ii0.821.952.757 (2)167
O2W—H3W⋯O2ii0.821.912.725 (2)176
O2W—H4W⋯O2iii0.821.952.743 (2)163

Symmetry codes: (i) ; (ii) ; (iii) .

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