Literature DB >> 21203058

catena-Poly[[aqua-(dipyrido[3,2-a:2',3'-c]phenazine-κN,N)zinc(II)]-μ-pyrazine-2,3-dicarboxyl-ato-κN,O:O].

Xin Wang, Xiu-Ying Li, Qing-Wei Wang, Guang-Bo Che.   

Abstract

In the title compound, [Zn(C(6)H(2)N(2)O(4))(C(18)H(10)N(4))(H(2)O)](n) or [Zn(PZDC)(DPPZ)(H(2)O)](n) (where DPPZ is dipyrido[3,2-a:2',3'-c]phenazine and H(2)PZDC is pyrazine-2,3-dicarboxylic acid), the Zn atom is six-coordinated in a slightly distorted octa-hedral coordination geometry by three N atoms from one DPPZ ligand and one PZDC(2-) dianion, three O atoms from two different PZDC(2-) ligands and one water mol-ecule. Each PZDC(2-) dianion serves as a spacer, connecting adjacent metal atoms into a polymeric chain structure parallel to the b axis. The chain motif is consolidated into a three-dimensional supra-molecular network by O-H⋯O and O-H⋯N hydrogen bonds and π-π aromatic stacking inter-actions involving adjacent DPPZ ligands and PZDC(2-) dianions with centroid-centroid separations of 3.522 (6) and 3.732 (8) Å, respectively.

Entities:  

Year:  2008        PMID: 21203058      PMCID: PMC2961988          DOI: 10.1107/S1600536808022824

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Che et al. (2008 ▶); Che, Li et al. (2006 ▶); Che, Xu & Liu (2006 ▶); Liu et al. (2008 ▶); Xu et al. (2008 ▶).

Experimental

Crystal data

[Zn(C6H2N2O4)(C18H10N4)(H2O)] M = 531.78 Triclinic, a = 6.7821 (14) Å b = 7.4349 (15) Å c = 20.410 (4) Å α = 91.26 (3)° β = 95.77 (3)° γ = 98.16 (3)° V = 1012.9 (4) Å3 Z = 2 Mo Kα radiation μ = 1.27 mm−1 T = 292 (2) K 0.31 × 0.29 × 0.21 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.681, T max = 0.765 9890 measured reflections 4412 independent reflections 3278 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.148 S = 1.07 4412 reflections 333 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.58 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022824/rz2235sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022824/rz2235Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C6H2N2O4)(C18H10N4)(H2O)]Z = 2
Mr = 531.78F000 = 540
Triclinic, P1Dx = 1.744 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.7821 (14) ÅCell parameters from 4412 reflections
b = 7.4349 (15) Åθ = 3.0–27.5º
c = 20.410 (4) ŵ = 1.27 mm1
α = 91.26 (3)ºT = 292 (2) K
β = 95.77 (3)ºBlock, yellow
γ = 98.16 (3)º0.31 × 0.29 × 0.21 mm
V = 1012.9 (4) Å3
Rigaku R-AXIS RAPID diffractometer4412 independent reflections
Radiation source: fine-focus sealed tube3278 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.048
Detector resolution: 10.0 pixels mm-1θmax = 27.5º
T = 292(2) Kθmin = 3.0º
ω scansh = −8→8
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)k = −9→8
Tmin = 0.681, Tmax = 0.765l = −26→26
9890 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.148  w = 1/[σ2(Fo2) + (0.084P)2 + 0.1727P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
4412 reflectionsΔρmax = 0.42 e Å3
333 parametersΔρmin = −0.58 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.3785 (6)0.2965 (5)0.7826 (2)0.0344 (9)
H1−0.44260.30290.82060.041*
C2−0.4723 (6)0.1853 (6)0.7307 (2)0.0375 (10)
H2−0.59310.11190.73490.045*
C3−0.3868 (6)0.1832 (6)0.6728 (2)0.0395 (10)
H3−0.45280.11440.63640.047*
C4−0.1986 (6)0.2861 (5)0.6690 (2)0.0291 (8)
C5−0.0963 (6)0.2913 (5)0.60945 (19)0.0283 (8)
C6−0.0924 (7)0.2081 (5)0.5015 (2)0.0352 (9)
C7−0.1870 (8)0.1180 (6)0.4421 (2)0.0443 (11)
H7−0.31850.06010.44000.053*
C8−0.0836 (8)0.1170 (6)0.3880 (2)0.0493 (12)
H8−0.14580.05820.34910.059*
C90.1164 (9)0.2037 (6)0.3903 (2)0.0514 (12)
H90.18450.20030.35310.062*
C100.2107 (8)0.2921 (7)0.4464 (2)0.0479 (12)
H100.34200.34960.44710.058*
C110.1095 (7)0.2967 (6)0.5036 (2)0.0379 (10)
C120.1042 (6)0.3850 (5)0.61078 (19)0.0292 (8)
C130.1983 (6)0.4856 (5)0.67084 (19)0.0286 (8)
C140.3909 (6)0.5847 (6)0.6747 (2)0.0345 (9)
H140.46370.58830.63840.041*
C150.4710 (6)0.6763 (6)0.7322 (2)0.0346 (9)
H150.59790.74440.73530.041*
C160.3603 (6)0.6662 (5)0.7859 (2)0.0326 (9)
H160.41650.72640.82530.039*
C170.0958 (5)0.4841 (5)0.72651 (18)0.0242 (7)
C18−0.1092 (5)0.3868 (5)0.72530 (18)0.0256 (8)
C190.1302 (5)0.9551 (5)0.89690 (18)0.0237 (7)
C200.1992 (5)1.1069 (5)0.93824 (19)0.0247 (8)
C210.2685 (6)0.9238 (5)1.02315 (19)0.0288 (8)
H210.31210.90901.06710.035*
C220.2102 (5)0.7712 (5)0.98204 (19)0.0261 (8)
H220.22350.65660.99780.031*
C230.0378 (6)0.9589 (5)0.82528 (19)0.0271 (8)
C240.2040 (5)1.3019 (5)0.91602 (18)0.0249 (8)
N1−0.1984 (5)0.3963 (4)0.78077 (16)0.0267 (7)
N20.1761 (5)0.5730 (4)0.78317 (15)0.0271 (7)
N3−0.1925 (5)0.2047 (4)0.55512 (17)0.0349 (8)
N40.2041 (5)0.3872 (5)0.55828 (17)0.0348 (8)
N50.1356 (4)0.7877 (4)0.92032 (15)0.0234 (6)
N60.2640 (5)1.0909 (4)1.00185 (16)0.0281 (7)
O1−0.0880 (4)0.8227 (4)0.80655 (14)0.0362 (7)
O20.0974 (5)1.0921 (4)0.79424 (15)0.0410 (7)
O1W−0.2753 (5)0.5957 (5)0.91335 (17)0.0389 (8)
O30.3705 (4)1.3872 (4)0.91050 (17)0.0427 (8)
O40.0381 (4)1.3587 (3)0.90882 (14)0.0305 (6)
Zn−0.03443 (6)0.57612 (5)0.85620 (2)0.02642 (16)
HW1A−0.368 (8)0.552 (8)0.909 (3)0.054 (19)*
HW1B−0.295 (7)0.692 (7)0.930 (2)0.034 (12)*
U11U22U33U12U13U23
C10.034 (2)0.031 (2)0.037 (2)−0.0052 (17)0.0120 (17)−0.0021 (17)
C20.032 (2)0.036 (2)0.042 (2)−0.0062 (18)0.0058 (18)−0.0039 (18)
C30.038 (2)0.037 (2)0.038 (2)−0.0082 (19)0.0014 (18)−0.0108 (18)
C40.0326 (19)0.0232 (18)0.030 (2)−0.0004 (15)0.0040 (16)−0.0055 (15)
C50.0333 (19)0.0250 (18)0.0254 (19)0.0033 (16)−0.0004 (15)−0.0022 (15)
C60.047 (2)0.032 (2)0.027 (2)0.0109 (19)−0.0004 (18)−0.0010 (16)
C70.058 (3)0.040 (2)0.032 (2)0.008 (2)−0.006 (2)−0.0054 (18)
C80.080 (4)0.040 (2)0.026 (2)0.015 (2)−0.011 (2)−0.0046 (18)
C90.082 (4)0.043 (3)0.032 (2)0.011 (3)0.019 (2)−0.003 (2)
C100.065 (3)0.048 (3)0.033 (2)0.011 (2)0.013 (2)−0.001 (2)
C110.050 (2)0.034 (2)0.030 (2)0.007 (2)0.0097 (19)−0.0021 (17)
C120.0334 (19)0.0291 (19)0.025 (2)0.0046 (16)0.0045 (16)−0.0019 (15)
C130.0273 (18)0.0256 (19)0.031 (2)−0.0009 (15)−0.0011 (15)0.0024 (15)
C140.033 (2)0.037 (2)0.035 (2)0.0046 (17)0.0107 (17)0.0014 (17)
C150.0257 (18)0.039 (2)0.037 (2)−0.0023 (17)0.0029 (17)0.0059 (18)
C160.032 (2)0.034 (2)0.029 (2)−0.0023 (17)−0.0001 (16)−0.0016 (16)
C170.0242 (17)0.0212 (17)0.0275 (19)0.0049 (14)0.0029 (14)0.0012 (14)
C180.0274 (18)0.0208 (17)0.0273 (19)0.0009 (14)−0.0003 (15)0.0009 (14)
C190.0223 (16)0.0213 (17)0.0269 (19)−0.0007 (14)0.0061 (14)−0.0005 (14)
C200.0207 (16)0.0185 (17)0.034 (2)−0.0023 (14)0.0084 (15)−0.0024 (15)
C210.0315 (18)0.0289 (19)0.0245 (19)−0.0020 (16)0.0060 (15)−0.0003 (15)
C220.0281 (18)0.0223 (17)0.029 (2)0.0052 (15)0.0045 (15)0.0031 (15)
C230.0302 (18)0.0231 (18)0.028 (2)0.0050 (15)0.0032 (15)0.0015 (15)
C240.0307 (18)0.0192 (16)0.0228 (18)−0.0046 (15)0.0066 (15)−0.0052 (13)
N10.0270 (15)0.0228 (15)0.0294 (17)−0.0004 (13)0.0050 (13)−0.0041 (12)
N20.0301 (16)0.0242 (15)0.0240 (16)−0.0034 (13)−0.0008 (13)−0.0030 (12)
N30.0423 (19)0.0304 (17)0.0305 (19)0.0023 (15)0.0017 (15)−0.0043 (14)
N40.0417 (19)0.0354 (18)0.0265 (18)0.0027 (15)0.0038 (15)−0.0016 (14)
N50.0243 (14)0.0201 (14)0.0260 (16)0.0017 (12)0.0060 (12)0.0013 (12)
N60.0277 (15)0.0260 (16)0.0294 (17)−0.0008 (13)0.0049 (13)−0.0033 (13)
O10.0410 (15)0.0258 (14)0.0365 (16)−0.0014 (12)−0.0119 (13)0.0002 (12)
O20.0549 (19)0.0329 (15)0.0347 (17)0.0005 (14)0.0095 (14)0.0072 (12)
O1W0.0271 (16)0.0357 (18)0.052 (2)−0.0066 (14)0.0164 (14)−0.0192 (15)
O30.0335 (15)0.0341 (16)0.057 (2)−0.0112 (13)0.0087 (14)0.0051 (14)
O40.0342 (14)0.0237 (13)0.0367 (16)0.0096 (11)0.0091 (12)0.0088 (11)
Zn0.0313 (3)0.0203 (2)0.0259 (3)−0.00162 (17)0.00328 (17)−0.00223 (16)
C1—N11.341 (5)C15—H150.9300
C1—C21.374 (6)C16—N21.335 (5)
C1—H10.9300C16—H160.9300
C2—C31.369 (6)C17—N21.345 (5)
C2—H20.9300C17—C181.471 (5)
C3—C41.402 (5)C18—N11.341 (5)
C3—H30.9300C19—N51.347 (4)
C4—C181.393 (5)C19—C201.390 (5)
C4—C51.457 (5)C19—C231.534 (5)
C5—N31.332 (5)C20—N61.342 (5)
C5—C121.435 (5)C20—C241.525 (5)
C6—N31.344 (5)C21—N61.328 (5)
C6—C71.420 (6)C21—C221.383 (5)
C6—C111.429 (6)C21—H210.9300
C7—C81.367 (7)C22—N51.325 (5)
C7—H70.9300C22—H220.9300
C8—C91.412 (7)C23—O21.229 (4)
C8—H80.9300C23—O11.253 (5)
C9—C101.360 (7)C24—O31.231 (4)
C9—H90.9300C24—O41.254 (5)
C10—C111.414 (6)N1—Zn2.130 (3)
C10—H100.9300N2—Zn2.167 (3)
C11—N41.346 (5)N5—Zn2.147 (3)
C12—N41.324 (5)O1—Zn2.172 (3)
C12—C131.462 (5)O1W—Zn2.120 (3)
C13—C171.390 (5)O1W—HW1A0.66 (5)
C13—C141.399 (5)O1W—HW1B0.82 (5)
C14—C151.367 (6)O4—Zni2.051 (3)
C14—H140.9300Zn—O4ii2.051 (3)
C15—C161.387 (6)
N1—C1—C2122.7 (4)N1—C18—C17116.8 (3)
N1—C1—H1118.6C4—C18—C17119.9 (3)
C2—C1—H1118.6N5—C19—C20119.5 (3)
C3—C2—C1119.5 (4)N5—C19—C23115.0 (3)
C3—C2—H2120.2C20—C19—C23125.5 (3)
C1—C2—H2120.2N6—C20—C19121.5 (3)
C2—C3—C4119.2 (4)N6—C20—C24115.0 (3)
C2—C3—H3120.4C19—C20—C24123.5 (3)
C4—C3—H3120.4N6—C21—C22122.1 (4)
C18—C4—C3117.3 (4)N6—C21—H21119.0
C18—C4—C5119.9 (3)C22—C21—H21119.0
C3—C4—C5122.9 (4)N5—C22—C21120.2 (3)
N3—C5—C12121.8 (4)N5—C22—H22119.9
N3—C5—C4118.3 (3)C21—C22—H22119.9
C12—C5—C4120.0 (3)O2—C23—O1129.1 (4)
N3—C6—C7119.4 (4)O2—C23—C19116.4 (3)
N3—C6—C11121.2 (4)O1—C23—C19114.5 (3)
C7—C6—C11119.3 (4)O3—C24—O4127.8 (3)
C8—C7—C6119.6 (5)O3—C24—C20116.4 (3)
C8—C7—H7120.2O4—C24—C20115.7 (3)
C6—C7—H7120.2C1—N1—C18117.8 (3)
C7—C8—C9121.0 (4)C1—N1—Zn127.4 (3)
C7—C8—H8119.5C18—N1—Zn114.9 (2)
C9—C8—H8119.5C16—N2—C17118.8 (3)
C10—C9—C8120.8 (5)C16—N2—Zn127.2 (3)
C10—C9—H9119.6C17—N2—Zn113.4 (2)
C8—C9—H9119.6C5—N3—C6116.8 (4)
C9—C10—C11120.1 (5)C12—N4—C11117.0 (4)
C9—C10—H10119.9C22—N5—C19119.2 (3)
C11—C10—H10119.9C22—N5—Zn126.6 (2)
N4—C11—C10119.3 (4)C19—N5—Zn113.1 (2)
N4—C11—C6121.5 (4)C21—N6—C20117.3 (3)
C10—C11—C6119.2 (4)C23—O1—Zn113.8 (2)
N4—C12—C5121.6 (4)Zn—O1W—HW1A129 (5)
N4—C12—C13119.0 (3)Zn—O1W—HW1B123 (3)
C5—C12—C13119.3 (3)HW1A—O1W—HW1B100 (6)
C17—C13—C14118.0 (4)C24—O4—Zni127.6 (2)
C17—C13—C12119.8 (3)O4ii—Zn—O1W90.19 (13)
C14—C13—C12122.2 (4)O4ii—Zn—N190.37 (12)
C15—C14—C13119.5 (4)O1W—Zn—N196.93 (13)
C15—C14—H14120.2O4ii—Zn—N597.78 (12)
C13—C14—H14120.2O1W—Zn—N586.87 (13)
C14—C15—C16119.0 (4)N1—Zn—N5171.02 (11)
C14—C15—H15120.5O4ii—Zn—N298.61 (11)
C16—C15—H15120.5O1W—Zn—N2169.43 (13)
N2—C16—C15122.4 (4)N1—Zn—N277.29 (11)
N2—C16—H16118.8N5—Zn—N297.65 (12)
C15—C16—H16118.8O4ii—Zn—O1174.40 (11)
N2—C17—C13122.3 (3)O1W—Zn—O190.70 (13)
N2—C17—C18116.9 (3)N1—Zn—O195.01 (11)
C13—C17—C18120.8 (3)N5—Zn—O176.76 (11)
N1—C18—C4123.3 (3)N2—Zn—O181.10 (12)
D—H···AD—HH···AD···AD—H···A
O1W—HW1A···O3iii0.66 (5)2.01 (5)2.662 (4)169 (7)
O1W—HW1B···N6iv0.82 (5)2.07 (5)2.859 (5)159 (4)
N1—Zn2.130 (3)
N2—Zn2.167 (3)
N5—Zn2.147 (3)
O1—Zn2.172 (3)
O1W—Zn2.120 (3)
O4—Zni2.051 (3)
O4ii—Zn—O1W90.19 (13)
O4ii—Zn—N190.37 (12)
O1W—Zn—N196.93 (13)
O4ii—Zn—N597.78 (12)
O1W—Zn—N586.87 (13)
N1—Zn—N5171.02 (11)
O4ii—Zn—N298.61 (11)
O1W—Zn—N2169.43 (13)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—HW1A⋯O3iii0.66 (5)2.01 (5)2.662 (4)169 (7)
O1W—HW1B⋯N6iv0.82 (5)2.07 (5)2.859 (5)159 (4)

Symmetry codes: (iii) ; (iv) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  Bis(2,4,6-triamino-1,3,5-triazin-1-ium) pyrazine-2,3-dicarboxyl-ate tetra-hydrate: a synchrotron radiation study.

Authors:  Hossein Eshtiagh-Hosseini; Azam Hassanpoor; Laura Canadillas-Delgado; Masoud Mirzaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

2.  catena-Poly[[aqua-(dipyrido[3,2-a:2',3'-c]phenazine-κN,N)iron(II)]-μ-pyrazine-2,3-dicarboxyl-ato-κN,O:O].

Authors:  Zhan-Lin Xu; Xiu-Ying Li; Guang-Bo Che; Lu Lu; Chun-Hui Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

3.  Poly[[(N,N-dimethyl-formamide-κO)(μ(3)-pyrazine-2,3-dicarboxyl-ato-κN,O:O:O)copper(II)] monohydrate].

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04
  3 in total

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