Literature DB >> 21203045

A second polymorph of aqua-(2,9-di-methyl-1,10-phenanthroline-κN,N')bis-(formato-κO)copper(II).

Jian-Li Lin1, Wei Xu, Hong-Zhen Xie.   

Abstract

A new monoclinic polymorphic form of the title compound, [Cu(HCO(2))(2)(C(14)H(12)N(2))(H(2)O)], is described. It differs from the first ortho-rhom-bic polymorph [Pan, Lin & Zheng (2005 ▶). Z. Kristallogr. New Cryst. Struct.220, 495-496] in the deviation of the Cu atom relative to the plane of the 2,9-dimethyl-1,10-phenanthroline (dmp) ligand. In the present structure, the Cu atom is shifted from the mean plane of the dmp ligand by only 0.005 (1) Å, compared with 0.318 (6) Å in the ortho-rhom-bic form. Hydrogen-bonding and π-π stacking inter-actions (mean inter-planar distance of 3.59 Å in the title compound) in the two different polymorphs are both essential to the supra-molecular assembly.

Entities:  

Year:  2008        PMID: 21203045      PMCID: PMC2961975          DOI: 10.1107/S1600536808022812

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the orthorhombic polymorph, see: Pan et al. (2005 ▶).

Experimental

Crystal data

[Cu(HCO2)2(C14H12N2)(H2O)] M = 379.85 Monoclinic, a = 10.669 (2) Å b = 7.7677 (16) Å c = 19.338 (4) Å β = 94.22 (3)° V = 1598.3 (6) Å3 Z = 4 Mo Kα radiation μ = 1.40 mm−1 T = 295 (2) K 0.26 × 0.17 × 0.09 mm

Data collection

Bruker P4 diffractometer Absorption correction: multi-scan (XSCANS; Siemens, 1996 ▶) T min = 0.749, T max = 0.879 15099 measured reflections 3632 independent reflections 3202 reflections with I > 2σ(I) R int = 0.019 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.072 S = 1.06 3632 reflections 219 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.22 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXL97; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022812/fj2128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022812/fj2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(HCO2)2(C14H12N2)(H2O)]F000 = 780
Mr = 379.85Dx = 1.579 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 10.669 (2) Åθ = 5.0–12.5º
b = 7.7677 (16) ŵ = 1.40 mm1
c = 19.338 (4) ÅT = 295 (2) K
β = 94.22 (3)ºPlate, blue
V = 1598.3 (6) Å30.26 × 0.17 × 0.09 mm
Z = 4
Bruker P4 diffractometerRint = 0.019
Radiation source: fine-focus sealed tubeθmax = 27.5º
Monochromator: graphiteθmin = 3.3º
T = 295(2) Kh = −13→13
θ/2θ scansk = −10→9
Absorption correction: multi-scan(XSCANS; Siemens, 1996)l = −24→25
Tmin = 0.749, Tmax = 0.8793 standard reflections
15099 measured reflections every 97 reflections
3632 independent reflections intensity decay: none
3202 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.072  w = 1/[σ2(Fo2) + (0.0413P)2 + 0.5201P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
3632 reflectionsΔρmax = 0.35 e Å3
219 parametersΔρmin = −0.22 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu0.209657 (18)0.90493 (2)0.156116 (9)0.02440 (7)
N10.21922 (12)0.80402 (17)0.05966 (6)0.0257 (3)
N20.42113 (13)0.89494 (17)0.14606 (7)0.0275 (3)
C10.11886 (17)0.7632 (2)0.01841 (9)0.0325 (4)
C20.1317 (2)0.6999 (3)−0.04910 (10)0.0472 (5)
H2A0.06050.6741−0.07780.057*
C30.2471 (2)0.6765 (3)−0.07224 (10)0.0508 (5)
H3A0.25520.6332−0.11650.061*
C40.35505 (19)0.7178 (3)−0.02912 (9)0.0393 (4)
C50.4803 (2)0.6986 (3)−0.04949 (11)0.0541 (6)
H5A0.49290.6540−0.09310.065*
C60.5804 (2)0.7435 (3)−0.00711 (11)0.0537 (6)
H6A0.66090.7298−0.02170.064*
C70.56433 (17)0.8120 (3)0.05998 (10)0.0397 (4)
C80.66470 (19)0.8661 (3)0.10598 (12)0.0511 (5)
H8A0.74680.85770.09310.061*
C90.64241 (19)0.9302 (3)0.16884 (12)0.0478 (5)
H9A0.70910.96590.19920.057*
C100.51845 (17)0.9430 (2)0.18838 (9)0.0350 (4)
C110.44274 (15)0.8321 (2)0.08260 (8)0.0289 (3)
C120.33615 (16)0.7831 (2)0.03694 (8)0.0281 (3)
C13−0.00801 (18)0.7856 (3)0.04536 (10)0.0438 (4)
H13A−0.03020.68310.06940.066*
H13B−0.06910.80660.00730.066*
H13C−0.00620.88160.07670.066*
C140.4920 (2)1.0068 (3)0.25888 (10)0.0537 (6)
H14A0.42431.08840.25470.081*
H14B0.56591.06140.28020.081*
H14C0.46910.91160.28700.081*
O10.18364 (13)0.98991 (18)0.24857 (6)0.0408 (3)
O2−0.02000 (15)1.0452 (3)0.22488 (8)0.0613 (4)
C150.0760 (2)1.0407 (3)0.26275 (10)0.0471 (5)
O30.18495 (13)1.12747 (15)0.10994 (6)0.0365 (3)
O40.18327 (18)1.41073 (16)0.10823 (8)0.0530 (4)
C160.19793 (18)1.2723 (2)0.13792 (9)0.0360 (4)
O50.19568 (12)0.67025 (15)0.19376 (6)0.0344 (3)
H5B0.19580.58340.16360.051*
H5C0.14160.64520.22420.054*
H150.07511.09040.31110.052*
H160.23831.27050.18520.049*
U11U22U33U12U13U23
Cu0.02683 (11)0.02277 (11)0.02410 (11)0.00161 (7)0.00524 (7)−0.00126 (7)
N10.0280 (7)0.0227 (6)0.0263 (6)−0.0003 (5)0.0021 (5)−0.0001 (5)
N20.0267 (7)0.0283 (7)0.0276 (6)−0.0012 (5)0.0032 (5)0.0011 (5)
C10.0353 (9)0.0304 (8)0.0313 (8)−0.0023 (7)−0.0011 (7)−0.0003 (7)
C20.0495 (12)0.0554 (12)0.0350 (9)−0.0055 (10)−0.0086 (8)−0.0096 (9)
C30.0627 (14)0.0601 (13)0.0297 (9)−0.0010 (11)0.0040 (9)−0.0158 (9)
C40.0467 (11)0.0421 (10)0.0300 (8)0.0022 (8)0.0093 (7)−0.0060 (8)
C50.0587 (14)0.0690 (15)0.0373 (10)0.0073 (11)0.0227 (9)−0.0110 (10)
C60.0430 (12)0.0737 (15)0.0474 (11)0.0080 (10)0.0234 (9)−0.0016 (11)
C70.0319 (9)0.0479 (11)0.0408 (9)0.0023 (8)0.0126 (7)0.0052 (9)
C80.0246 (9)0.0722 (14)0.0575 (12)−0.0005 (9)0.0102 (8)0.0079 (11)
C90.0306 (10)0.0592 (13)0.0526 (12)−0.0096 (9)−0.0033 (8)0.0047 (10)
C100.0323 (9)0.0346 (9)0.0374 (9)−0.0041 (7)−0.0018 (7)0.0021 (7)
C110.0292 (8)0.0288 (8)0.0295 (7)0.0007 (6)0.0077 (6)0.0020 (7)
C120.0327 (8)0.0264 (7)0.0258 (7)0.0020 (6)0.0070 (6)0.0006 (6)
C130.0308 (9)0.0564 (12)0.0434 (10)−0.0056 (9)−0.0033 (8)0.0005 (9)
C140.0484 (12)0.0687 (15)0.0426 (11)−0.0057 (11)−0.0066 (9)−0.0160 (11)
O10.0475 (8)0.0463 (8)0.0293 (6)0.0104 (6)0.0073 (5)−0.0055 (6)
O20.0465 (9)0.0904 (13)0.0485 (8)0.0135 (9)0.0128 (7)−0.0072 (9)
C150.0577 (13)0.0534 (12)0.0319 (9)0.0127 (10)0.0159 (9)−0.0061 (9)
O30.0529 (8)0.0249 (6)0.0319 (6)0.0037 (5)0.0045 (5)0.0000 (5)
O40.0859 (12)0.0259 (7)0.0479 (8)0.0012 (7)0.0098 (8)0.0004 (6)
C160.0443 (10)0.0292 (9)0.0346 (8)−0.0012 (7)0.0028 (7)−0.0013 (7)
O50.0415 (7)0.0271 (6)0.0359 (6)−0.0028 (5)0.0122 (5)0.0032 (5)
Cu—O11.9450 (12)C7—C111.408 (2)
Cu—O31.9546 (12)C8—C91.351 (3)
Cu—O51.9726 (12)C8—H8A0.9300
Cu—N12.0328 (13)C9—C101.405 (3)
Cu—N22.2801 (15)C9—H9A0.9300
N1—C11.326 (2)C10—C141.497 (3)
N1—C121.363 (2)C11—C121.439 (2)
N2—C101.327 (2)C13—H13A0.9600
N2—C111.356 (2)C13—H13B0.9600
C1—C21.411 (2)C13—H13C0.9600
C1—C131.496 (3)C14—H14A0.9600
C2—C31.353 (3)C14—H14B0.9600
C2—H2A0.9300C14—H14C0.9600
C3—C41.408 (3)O1—C151.264 (2)
C3—H3A0.9300O2—C151.215 (3)
C4—C121.403 (2)C15—H151.0122
C4—C51.429 (3)O3—C161.252 (2)
C5—C61.343 (3)O4—C161.223 (2)
C5—H5A0.9300C16—H160.9821
C6—C71.424 (3)O5—H5B0.8914
C6—H6A0.9300O5—H5C0.8760
C7—C81.405 (3)
O1—Cu—O395.53 (6)C9—C8—H8A119.9
O1—Cu—O587.40 (6)C7—C8—H8A119.9
O1—Cu—N1174.06 (6)C8—C9—C10119.97 (19)
O1—Cu—N2107.40 (6)C8—C9—H9A120.0
O3—Cu—O5167.05 (6)C10—C9—H9A120.0
O3—Cu—N186.33 (5)N2—C10—C9121.54 (18)
O3—Cu—N295.28 (6)N2—C10—C14117.62 (17)
O5—Cu—N189.57 (5)C9—C10—C14120.81 (18)
O5—Cu—N295.87 (5)N2—C11—C7122.89 (16)
N1—Cu—N277.98 (6)N2—C11—C12118.11 (14)
C1—N1—C12119.71 (14)C7—C11—C12119.01 (15)
C1—N1—Cu123.47 (11)N1—C12—C4122.22 (16)
C12—N1—Cu116.80 (11)N1—C12—C11118.15 (14)
C10—N2—C11118.80 (15)C4—C12—C11119.63 (16)
C10—N2—Cu132.20 (12)C1—C13—H13A109.5
C11—N2—Cu108.95 (11)C1—C13—H13B109.5
N1—C1—C2120.71 (17)H13A—C13—H13B109.5
N1—C1—C13118.29 (15)C1—C13—H13C109.5
C2—C1—C13121.00 (17)H13A—C13—H13C109.5
C3—C2—C1120.38 (18)H13B—C13—H13C109.5
C3—C2—H2A119.8C10—C14—H14A109.5
C1—C2—H2A119.8C10—C14—H14B109.5
C2—C3—C4119.86 (17)H14A—C14—H14B109.5
C2—C3—H3A120.1C10—C14—H14C109.5
C4—C3—H3A120.1H14A—C14—H14C109.5
C12—C4—C3117.10 (18)H14B—C14—H14C109.5
C12—C4—C5119.28 (18)C15—O1—Cu119.93 (13)
C3—C4—C5123.61 (18)O2—C15—O1128.13 (18)
C6—C5—C4121.48 (18)O2—C15—H15118.8
C6—C5—H5A119.3O1—C15—H15112.9
C4—C5—H5A119.3C16—O3—Cu126.20 (12)
C5—C6—C7120.61 (18)O4—C16—O3125.51 (17)
C5—C6—H6A119.7O4—C16—H16118.8
C7—C6—H6A119.7O3—C16—H16114.6
C8—C7—C11116.55 (17)Cu—O5—H5B117.0
C8—C7—C6123.44 (18)Cu—O5—H5C121.6
C11—C7—C6119.99 (19)H5B—O5—H5C107.7
C9—C8—C7120.23 (18)
D—H···AD—HH···AD···AD—H···A
O5—H5C···O2i0.881.862.714 (2)166
O5—H5B···O4ii0.891.722.605 (2)175
Cu—O11.9450 (12)
Cu—O31.9546 (12)
Cu—O51.9726 (12)
Cu—N12.0328 (13)
Cu—N22.2801 (15)
O1—Cu—O395.53 (6)
O1—Cu—O587.40 (6)
O1—Cu—N1174.06 (6)
O1—Cu—N2107.40 (6)
O3—Cu—O5167.05 (6)
O3—Cu—N186.33 (5)
O3—Cu—N295.28 (6)
O5—Cu—N189.57 (5)
O5—Cu—N295.87 (5)
N1—Cu—N277.98 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5C⋯O2i0.881.862.714 (2)166
O5—H5B⋯O4ii0.891.722.605 (2)175

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
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1.  (2,9-Dimethyl-1,10-phenanthroline)(4-hydroxy-pyridine-2,6-dicarboxyl-ato)copper(II) trihydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

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  2 in total

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