| Literature DB >> 21203045 |
Jian-Li Lin1, Wei Xu, Hong-Zhen Xie.
Abstract
A new monoclinic polymorphic form of the title compound, [Cu(HCO(2))(2)(C(14)H(12)N(2))(H(2)O)], is described. It differs from the first ortho-rhom-bic polymorph [Pan, Lin & Zheng (2005 ▶). Z. Kristallogr. New Cryst. Struct.220, 495-496] in the deviation of the Cu atom relative to the plane of the 2,9-dimethyl-1,10-phenanthroline (dmp) ligand. In the present structure, the Cu atom is shifted from the mean plane of the dmp ligand by only 0.005 (1) Å, compared with 0.318 (6) Å in the ortho-rhom-bic form. Hydrogen-bonding and π-π stacking inter-actions (mean inter-planar distance of 3.59 Å in the title compound) in the two different polymorphs are both essential to the supra-molecular assembly.Entities:
Year: 2008 PMID: 21203045 PMCID: PMC2961975 DOI: 10.1107/S1600536808022812
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(HCO2)2(C14H12N2)(H2O)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 5.0–12.5º | |
| µ = 1.40 mm−1 | |
| β = 94.22 (3)º | Plate, blue |
| 0.26 × 0.17 × 0.09 mm | |
| Bruker P4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 27.5º |
| Monochromator: graphite | θmin = 3.3º |
| θ/2θ scans | |
| Absorption correction: multi-scan(XSCANS; Siemens, 1996) | |
| 3 standard reflections | |
| 15099 measured reflections | every 97 reflections |
| 3632 independent reflections | intensity decay: none |
| 3202 reflections with |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 3632 reflections | Δρmax = 0.35 e Å−3 |
| 219 parameters | Δρmin = −0.22 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu | 0.209657 (18) | 0.90493 (2) | 0.156116 (9) | 0.02440 (7) | |
| N1 | 0.21922 (12) | 0.80402 (17) | 0.05966 (6) | 0.0257 (3) | |
| N2 | 0.42113 (13) | 0.89494 (17) | 0.14606 (7) | 0.0275 (3) | |
| C1 | 0.11886 (17) | 0.7632 (2) | 0.01841 (9) | 0.0325 (4) | |
| C2 | 0.1317 (2) | 0.6999 (3) | −0.04910 (10) | 0.0472 (5) | |
| H2A | 0.0605 | 0.6741 | −0.0778 | 0.057* | |
| C3 | 0.2471 (2) | 0.6765 (3) | −0.07224 (10) | 0.0508 (5) | |
| H3A | 0.2552 | 0.6332 | −0.1165 | 0.061* | |
| C4 | 0.35505 (19) | 0.7178 (3) | −0.02912 (9) | 0.0393 (4) | |
| C5 | 0.4803 (2) | 0.6986 (3) | −0.04949 (11) | 0.0541 (6) | |
| H5A | 0.4929 | 0.6540 | −0.0931 | 0.065* | |
| C6 | 0.5804 (2) | 0.7435 (3) | −0.00711 (11) | 0.0537 (6) | |
| H6A | 0.6609 | 0.7298 | −0.0217 | 0.064* | |
| C7 | 0.56433 (17) | 0.8120 (3) | 0.05998 (10) | 0.0397 (4) | |
| C8 | 0.66470 (19) | 0.8661 (3) | 0.10598 (12) | 0.0511 (5) | |
| H8A | 0.7468 | 0.8577 | 0.0931 | 0.061* | |
| C9 | 0.64241 (19) | 0.9302 (3) | 0.16884 (12) | 0.0478 (5) | |
| H9A | 0.7091 | 0.9659 | 0.1992 | 0.057* | |
| C10 | 0.51845 (17) | 0.9430 (2) | 0.18838 (9) | 0.0350 (4) | |
| C11 | 0.44274 (15) | 0.8321 (2) | 0.08260 (8) | 0.0289 (3) | |
| C12 | 0.33615 (16) | 0.7831 (2) | 0.03694 (8) | 0.0281 (3) | |
| C13 | −0.00801 (18) | 0.7856 (3) | 0.04536 (10) | 0.0438 (4) | |
| H13A | −0.0302 | 0.6831 | 0.0694 | 0.066* | |
| H13B | −0.0691 | 0.8066 | 0.0073 | 0.066* | |
| H13C | −0.0062 | 0.8816 | 0.0767 | 0.066* | |
| C14 | 0.4920 (2) | 1.0068 (3) | 0.25888 (10) | 0.0537 (6) | |
| H14A | 0.4243 | 1.0884 | 0.2547 | 0.081* | |
| H14B | 0.5659 | 1.0614 | 0.2802 | 0.081* | |
| H14C | 0.4691 | 0.9116 | 0.2870 | 0.081* | |
| O1 | 0.18364 (13) | 0.98991 (18) | 0.24857 (6) | 0.0408 (3) | |
| O2 | −0.02000 (15) | 1.0452 (3) | 0.22488 (8) | 0.0613 (4) | |
| C15 | 0.0760 (2) | 1.0407 (3) | 0.26275 (10) | 0.0471 (5) | |
| O3 | 0.18495 (13) | 1.12747 (15) | 0.10994 (6) | 0.0365 (3) | |
| O4 | 0.18327 (18) | 1.41073 (16) | 0.10823 (8) | 0.0530 (4) | |
| C16 | 0.19793 (18) | 1.2723 (2) | 0.13792 (9) | 0.0360 (4) | |
| O5 | 0.19568 (12) | 0.67025 (15) | 0.19376 (6) | 0.0344 (3) | |
| H5B | 0.1958 | 0.5834 | 0.1636 | 0.051* | |
| H5C | 0.1416 | 0.6452 | 0.2242 | 0.054* | |
| H15 | 0.0751 | 1.0904 | 0.3111 | 0.052* | |
| H16 | 0.2383 | 1.2705 | 0.1852 | 0.049* |
| Cu | 0.02683 (11) | 0.02277 (11) | 0.02410 (11) | 0.00161 (7) | 0.00524 (7) | −0.00126 (7) |
| N1 | 0.0280 (7) | 0.0227 (6) | 0.0263 (6) | −0.0003 (5) | 0.0021 (5) | −0.0001 (5) |
| N2 | 0.0267 (7) | 0.0283 (7) | 0.0276 (6) | −0.0012 (5) | 0.0032 (5) | 0.0011 (5) |
| C1 | 0.0353 (9) | 0.0304 (8) | 0.0313 (8) | −0.0023 (7) | −0.0011 (7) | −0.0003 (7) |
| C2 | 0.0495 (12) | 0.0554 (12) | 0.0350 (9) | −0.0055 (10) | −0.0086 (8) | −0.0096 (9) |
| C3 | 0.0627 (14) | 0.0601 (13) | 0.0297 (9) | −0.0010 (11) | 0.0040 (9) | −0.0158 (9) |
| C4 | 0.0467 (11) | 0.0421 (10) | 0.0300 (8) | 0.0022 (8) | 0.0093 (7) | −0.0060 (8) |
| C5 | 0.0587 (14) | 0.0690 (15) | 0.0373 (10) | 0.0073 (11) | 0.0227 (9) | −0.0110 (10) |
| C6 | 0.0430 (12) | 0.0737 (15) | 0.0474 (11) | 0.0080 (10) | 0.0234 (9) | −0.0016 (11) |
| C7 | 0.0319 (9) | 0.0479 (11) | 0.0408 (9) | 0.0023 (8) | 0.0126 (7) | 0.0052 (9) |
| C8 | 0.0246 (9) | 0.0722 (14) | 0.0575 (12) | −0.0005 (9) | 0.0102 (8) | 0.0079 (11) |
| C9 | 0.0306 (10) | 0.0592 (13) | 0.0526 (12) | −0.0096 (9) | −0.0033 (8) | 0.0047 (10) |
| C10 | 0.0323 (9) | 0.0346 (9) | 0.0374 (9) | −0.0041 (7) | −0.0018 (7) | 0.0021 (7) |
| C11 | 0.0292 (8) | 0.0288 (8) | 0.0295 (7) | 0.0007 (6) | 0.0077 (6) | 0.0020 (7) |
| C12 | 0.0327 (8) | 0.0264 (7) | 0.0258 (7) | 0.0020 (6) | 0.0070 (6) | 0.0006 (6) |
| C13 | 0.0308 (9) | 0.0564 (12) | 0.0434 (10) | −0.0056 (9) | −0.0033 (8) | 0.0005 (9) |
| C14 | 0.0484 (12) | 0.0687 (15) | 0.0426 (11) | −0.0057 (11) | −0.0066 (9) | −0.0160 (11) |
| O1 | 0.0475 (8) | 0.0463 (8) | 0.0293 (6) | 0.0104 (6) | 0.0073 (5) | −0.0055 (6) |
| O2 | 0.0465 (9) | 0.0904 (13) | 0.0485 (8) | 0.0135 (9) | 0.0128 (7) | −0.0072 (9) |
| C15 | 0.0577 (13) | 0.0534 (12) | 0.0319 (9) | 0.0127 (10) | 0.0159 (9) | −0.0061 (9) |
| O3 | 0.0529 (8) | 0.0249 (6) | 0.0319 (6) | 0.0037 (5) | 0.0045 (5) | 0.0000 (5) |
| O4 | 0.0859 (12) | 0.0259 (7) | 0.0479 (8) | 0.0012 (7) | 0.0098 (8) | 0.0004 (6) |
| C16 | 0.0443 (10) | 0.0292 (9) | 0.0346 (8) | −0.0012 (7) | 0.0028 (7) | −0.0013 (7) |
| O5 | 0.0415 (7) | 0.0271 (6) | 0.0359 (6) | −0.0028 (5) | 0.0122 (5) | 0.0032 (5) |
| Cu—O1 | 1.9450 (12) | C7—C11 | 1.408 (2) |
| Cu—O3 | 1.9546 (12) | C8—C9 | 1.351 (3) |
| Cu—O5 | 1.9726 (12) | C8—H8A | 0.9300 |
| Cu—N1 | 2.0328 (13) | C9—C10 | 1.405 (3) |
| Cu—N2 | 2.2801 (15) | C9—H9A | 0.9300 |
| N1—C1 | 1.326 (2) | C10—C14 | 1.497 (3) |
| N1—C12 | 1.363 (2) | C11—C12 | 1.439 (2) |
| N2—C10 | 1.327 (2) | C13—H13A | 0.9600 |
| N2—C11 | 1.356 (2) | C13—H13B | 0.9600 |
| C1—C2 | 1.411 (2) | C13—H13C | 0.9600 |
| C1—C13 | 1.496 (3) | C14—H14A | 0.9600 |
| C2—C3 | 1.353 (3) | C14—H14B | 0.9600 |
| C2—H2A | 0.9300 | C14—H14C | 0.9600 |
| C3—C4 | 1.408 (3) | O1—C15 | 1.264 (2) |
| C3—H3A | 0.9300 | O2—C15 | 1.215 (3) |
| C4—C12 | 1.403 (2) | C15—H15 | 1.0122 |
| C4—C5 | 1.429 (3) | O3—C16 | 1.252 (2) |
| C5—C6 | 1.343 (3) | O4—C16 | 1.223 (2) |
| C5—H5A | 0.9300 | C16—H16 | 0.9821 |
| C6—C7 | 1.424 (3) | O5—H5B | 0.8914 |
| C6—H6A | 0.9300 | O5—H5C | 0.8760 |
| C7—C8 | 1.405 (3) | ||
| O1—Cu—O3 | 95.53 (6) | C9—C8—H8A | 119.9 |
| O1—Cu—O5 | 87.40 (6) | C7—C8—H8A | 119.9 |
| O1—Cu—N1 | 174.06 (6) | C8—C9—C10 | 119.97 (19) |
| O1—Cu—N2 | 107.40 (6) | C8—C9—H9A | 120.0 |
| O3—Cu—O5 | 167.05 (6) | C10—C9—H9A | 120.0 |
| O3—Cu—N1 | 86.33 (5) | N2—C10—C9 | 121.54 (18) |
| O3—Cu—N2 | 95.28 (6) | N2—C10—C14 | 117.62 (17) |
| O5—Cu—N1 | 89.57 (5) | C9—C10—C14 | 120.81 (18) |
| O5—Cu—N2 | 95.87 (5) | N2—C11—C7 | 122.89 (16) |
| N1—Cu—N2 | 77.98 (6) | N2—C11—C12 | 118.11 (14) |
| C1—N1—C12 | 119.71 (14) | C7—C11—C12 | 119.01 (15) |
| C1—N1—Cu | 123.47 (11) | N1—C12—C4 | 122.22 (16) |
| C12—N1—Cu | 116.80 (11) | N1—C12—C11 | 118.15 (14) |
| C10—N2—C11 | 118.80 (15) | C4—C12—C11 | 119.63 (16) |
| C10—N2—Cu | 132.20 (12) | C1—C13—H13A | 109.5 |
| C11—N2—Cu | 108.95 (11) | C1—C13—H13B | 109.5 |
| N1—C1—C2 | 120.71 (17) | H13A—C13—H13B | 109.5 |
| N1—C1—C13 | 118.29 (15) | C1—C13—H13C | 109.5 |
| C2—C1—C13 | 121.00 (17) | H13A—C13—H13C | 109.5 |
| C3—C2—C1 | 120.38 (18) | H13B—C13—H13C | 109.5 |
| C3—C2—H2A | 119.8 | C10—C14—H14A | 109.5 |
| C1—C2—H2A | 119.8 | C10—C14—H14B | 109.5 |
| C2—C3—C4 | 119.86 (17) | H14A—C14—H14B | 109.5 |
| C2—C3—H3A | 120.1 | C10—C14—H14C | 109.5 |
| C4—C3—H3A | 120.1 | H14A—C14—H14C | 109.5 |
| C12—C4—C3 | 117.10 (18) | H14B—C14—H14C | 109.5 |
| C12—C4—C5 | 119.28 (18) | C15—O1—Cu | 119.93 (13) |
| C3—C4—C5 | 123.61 (18) | O2—C15—O1 | 128.13 (18) |
| C6—C5—C4 | 121.48 (18) | O2—C15—H15 | 118.8 |
| C6—C5—H5A | 119.3 | O1—C15—H15 | 112.9 |
| C4—C5—H5A | 119.3 | C16—O3—Cu | 126.20 (12) |
| C5—C6—C7 | 120.61 (18) | O4—C16—O3 | 125.51 (17) |
| C5—C6—H6A | 119.7 | O4—C16—H16 | 118.8 |
| C7—C6—H6A | 119.7 | O3—C16—H16 | 114.6 |
| C8—C7—C11 | 116.55 (17) | Cu—O5—H5B | 117.0 |
| C8—C7—C6 | 123.44 (18) | Cu—O5—H5C | 121.6 |
| C11—C7—C6 | 119.99 (19) | H5B—O5—H5C | 107.7 |
| C9—C8—C7 | 120.23 (18) |
| H··· | ||||
| O5—H5C···O2i | 0.88 | 1.86 | 2.714 (2) | 166 |
| O5—H5B···O4ii | 0.89 | 1.72 | 2.605 (2) | 175 |
| Cu—O1 | 1.9450 (12) |
| Cu—O3 | 1.9546 (12) |
| Cu—O5 | 1.9726 (12) |
| Cu—N1 | 2.0328 (13) |
| Cu—N2 | 2.2801 (15) |
| O1—Cu—O3 | 95.53 (6) |
| O1—Cu—O5 | 87.40 (6) |
| O1—Cu—N1 | 174.06 (6) |
| O1—Cu—N2 | 107.40 (6) |
| O3—Cu—O5 | 167.05 (6) |
| O3—Cu—N1 | 86.33 (5) |
| O3—Cu—N2 | 95.28 (6) |
| O5—Cu—N1 | 89.57 (5) |
| O5—Cu—N2 | 95.87 (5) |
| N1—Cu—N2 | 77.98 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.88 | 1.86 | 2.714 (2) | 166 |
| O5—H5 | 0.89 | 1.72 | 2.605 (2) | 175 |
Symmetry codes: (i) ; (ii) .