Literature DB >> 21203037

μ-2,3,5,6-Tetra-2-pyridylpyrazine-κN,N,N:κN,N,N-bis-[(methanol-κO)(nitrato-κO,O')(nitrato-κO)cadmium(II)].

Mirabdullah Seyed Sadjadi, Amin Ebadi, Karim Zare, Vahid Amani, Hamid Reza Khavasi.   

Abstract

The title complex, [Cd(2)(NO(3))(4)(C(24)H(16)N(6))(CH(4)O)(2)], displays a centrosymmetric dinuclear structure, in which the 2,3,5,6-tetra-2-pyridinylpyrazine (tppz) ligand links two Cd ions separated by 7.323 (4) Å. Each Cd(II) center is seven-coordinated by three N-atom donors of tppz in one plane, by two O atoms nearly normal to this plane, and by two O atoms 0.393 (3) and 0.488 (3) Å from that plane. The two Cd(II) ions are above and below the plane of the pyrazine ring of the tppz ligand, oriented with respect to the pyridine rings at dihedral angles of 38.01 (3) and 31.90 (3)°. The dihedral angle between the two pyridine rings is 41.11 (3)°. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules.

Entities:  

Year:  2008        PMID: 21203037      PMCID: PMC2961967          DOI: 10.1107/S1600536808022320

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bock et al. (1992 ▶); Carranza et al. (2004 ▶); Goodwin & Lyons (1959 ▶); Graf et al. (1993 ▶, 1997 ▶); Greaves & Stoeckli-Evans (1992 ▶); Hadadzadeh et al. (2006 ▶); Laine et al. (1995 ▶); Sakai & Kurashima (2003 ▶); Yamada et al. (2000 ▶); Zhang et al. (2005 ▶).

Experimental

Crystal data

[Cd2(NO3)4(C24H16N6)(CH4O)2] M = 925.37 Monoclinic, a = 9.0777 (12) Å b = 10.8949 (9) Å c = 16.690 (2) Å β = 93.847 (10)° V = 1646.9 (3) Å3 Z = 2 Mo Kα radiation μ = 1.38 mm−1 T = 298 (2) K 0.50 × 0.40 × 0.25 mm

Data collection

Stoe IPDSII diffractometer Absorption correction: numerical (X-SHAPE; Stoe & Cie, 2005 ▶) T min = 0.510, T max = 0.710 4664 measured reflections 4642 independent reflections 4223 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.171 S = 1.07 4642 reflections 239 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.00 e Å−3 Δρmin = −0.95 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808022320/hk2497sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022320/hk2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd2(NO3)4(C24H16N6)(CH4O)2]F000 = 916
Mr = 925.37Dx = 1.866 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1543 reflections
a = 9.0777 (12) Åθ = 2.9–29.2º
b = 10.8949 (9) ŵ = 1.38 mm1
c = 16.690 (2) ÅT = 298 (2) K
β = 93.847 (10)ºPrism, colorless
V = 1646.9 (3) Å30.50 × 0.40 × 0.25 mm
Z = 2
Stoe IPDSII diffractometer4642 independent reflections
Radiation source: fine-focus sealed tube4223 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.075
Detector resolution: 0.15 mm pixels mm-1θmax = 29.8º
T = 298(2) Kθmin = 2.9º
rotation method scansh = −12→8
Absorption correction: numericalShape of crystal determined optically (X-SHAPE; Stoe & Cie, 2005)k = −14→10
Tmin = 0.510, Tmax = 0.710l = −22→19
4664 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.171  w = 1/[σ2(Fo2) + (0.1202P)2 + 2.8103P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.015
4642 reflectionsΔρmax = 1.00 e Å3
239 parametersΔρmin = −0.95 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.38914 (3)0.18792 (3)0.167582 (18)0.02737 (16)
O10.5852 (4)0.0852 (3)0.2353 (3)0.0397 (8)
H1B0.580 (6)0.001 (5)0.233 (3)0.020 (11)*
O20.2968 (5)0.1892 (3)0.3010 (3)0.0391 (9)
O30.4556 (4)0.3323 (3)0.2788 (2)0.0359 (8)
O40.3358 (5)0.3363 (5)0.3875 (3)0.0502 (10)
O50.2209 (6)0.3467 (5)0.1596 (3)0.0541 (10)
O60.1241 (9)0.2195 (8)0.0768 (8)0.118 (4)
O7−0.0039 (8)0.3728 (10)0.1114 (5)0.115 (3)
N10.2489 (4)0.0003 (4)0.1585 (3)0.0343 (8)
N20.4388 (4)0.0798 (3)0.0499 (2)0.0270 (7)
N30.5671 (4)0.2952 (3)0.0946 (3)0.0295 (7)
N40.3612 (4)0.2867 (4)0.3234 (2)0.0288 (7)
N50.1090 (6)0.3123 (4)0.1154 (4)0.0449 (12)
C10.1339 (6)−0.0214 (5)0.2045 (4)0.0440 (12)
H10.13630.01230.25580.053*
C20.0136 (6)−0.0917 (6)0.1781 (4)0.0482 (14)
H2−0.0620−0.10680.21170.058*
C30.0071 (5)−0.1392 (6)0.1013 (4)0.0465 (13)
H3−0.0750−0.18380.08160.056*
C40.1251 (5)−0.1196 (5)0.0536 (3)0.0365 (10)
H40.1232−0.15020.00160.044*
C50.2455 (4)−0.0533 (4)0.0855 (3)0.0314 (8)
C60.3792 (4)−0.0321 (4)0.0401 (3)0.0264 (8)
C70.5546 (4)0.1162 (4)0.0106 (3)0.0258 (7)
C80.5956 (4)0.2482 (4)0.0224 (3)0.0279 (8)
C90.6505 (5)0.3192 (4)−0.0380 (3)0.0319 (10)
H90.65880.2868−0.08900.038*
C100.6926 (5)0.4390 (4)−0.0209 (3)0.0361 (10)
H100.73250.4875−0.05990.043*
C110.6746 (5)0.4859 (4)0.0553 (3)0.0358 (10)
H110.70620.56480.06890.043*
C120.6086 (5)0.4124 (4)0.1104 (3)0.0324 (9)
H120.59200.44510.16050.039*
C130.7367 (7)0.1300 (6)0.2397 (5)0.0525 (14)
H13A0.74090.20930.26500.063*
H13B0.77020.13660.18650.063*
H13C0.79900.07380.27060.063*
U11U22U33U12U13U23
Cd10.0283 (2)0.0260 (2)0.0286 (2)0.00137 (9)0.00796 (15)−0.00333 (9)
O10.0364 (16)0.0306 (16)0.052 (2)0.0038 (13)0.0046 (16)0.0021 (15)
O20.045 (2)0.0310 (17)0.043 (2)−0.0054 (12)0.0127 (18)0.0033 (13)
O30.0322 (15)0.0335 (14)0.043 (2)−0.0044 (12)0.0110 (16)−0.0079 (14)
O40.0327 (17)0.082 (3)0.037 (2)−0.0043 (18)0.0072 (16)−0.023 (2)
O50.056 (2)0.056 (2)0.050 (2)0.018 (2)−0.002 (2)−0.004 (2)
O60.090 (5)0.076 (4)0.179 (11)0.014 (4)−0.058 (6)−0.043 (6)
O70.063 (4)0.176 (8)0.107 (6)0.073 (5)0.014 (4)0.038 (6)
N10.0264 (16)0.042 (2)0.0352 (19)−0.0026 (14)0.0116 (16)−0.0054 (16)
N20.0235 (14)0.0275 (15)0.0303 (17)0.0017 (12)0.0046 (14)−0.0009 (13)
N30.0296 (17)0.0284 (15)0.0311 (18)0.0012 (13)0.0064 (15)−0.0029 (14)
N40.0234 (15)0.0354 (16)0.0279 (17)−0.0004 (13)0.0047 (14)−0.0077 (15)
N50.051 (2)0.091 (3)0.082 (3)0.0054 (16)0.002 (2)0.015 (2)
C10.032 (2)0.053 (3)0.050 (3)−0.005 (2)0.018 (2)−0.011 (2)
C20.031 (2)0.055 (3)0.060 (3)−0.009 (2)0.021 (2)−0.015 (3)
C30.028 (2)0.052 (3)0.061 (3)−0.009 (2)0.012 (2)−0.013 (3)
C40.0243 (17)0.039 (2)0.047 (3)0.0025 (16)0.0053 (18)−0.012 (2)
C50.0228 (16)0.036 (2)0.036 (2)0.0003 (15)0.0055 (16)−0.0057 (18)
C60.0229 (16)0.0293 (18)0.0275 (18)0.0006 (13)0.0050 (15)−0.0047 (15)
C70.0219 (15)0.0279 (17)0.0282 (18)0.0002 (14)0.0050 (15)−0.0029 (15)
C80.0230 (16)0.0288 (18)0.033 (2)0.0007 (14)0.0063 (15)−0.0021 (16)
C90.0276 (19)0.032 (2)0.037 (2)−0.0010 (14)0.0117 (19)−0.0024 (16)
C100.034 (2)0.032 (2)0.044 (2)−0.0045 (17)0.012 (2)−0.0003 (19)
C110.033 (2)0.0295 (19)0.046 (3)−0.0027 (16)0.009 (2)−0.0044 (19)
C120.0320 (18)0.0294 (19)0.036 (2)0.0036 (15)0.0055 (18)−0.0053 (17)
C130.044 (3)0.051 (3)0.063 (4)0.003 (2)0.008 (3)0.005 (3)
O1—Cd12.330 (4)C4—H40.9300
O1—H1B0.92 (5)C5—N11.349 (6)
O2—Cd12.431 (4)C5—C61.492 (5)
O3—Cd12.476 (4)C6—N21.340 (5)
O5—Cd12.305 (4)C6—C7i1.409 (5)
N1—Cd12.407 (4)C7—N21.336 (5)
N2—Cd12.359 (4)C7—C6i1.409 (5)
N3—Cd12.393 (4)C7—C81.495 (6)
N4—O41.234 (5)C8—N31.350 (6)
N4—O21.257 (5)C8—C91.389 (6)
N4—O31.273 (5)C9—C101.385 (6)
N5—O61.211 (10)C9—H90.9300
N5—O71.217 (7)C10—C111.390 (7)
N5—O51.271 (8)C10—H100.9300
C1—N11.357 (6)C11—C121.387 (6)
C1—C21.382 (8)C11—H110.9300
C1—H10.9300C12—N31.352 (6)
C2—C31.380 (9)C12—H120.9300
C2—H20.9300C13—O11.457 (7)
C3—C41.393 (6)C13—H13A0.9600
C3—H30.9300C13—H13B0.9600
C4—C51.385 (6)C13—H13C0.9600
O5—Cd1—O1150.47 (16)N1—C1—C2122.5 (5)
O5—Cd1—N2119.29 (16)N1—C1—H1118.8
O1—Cd1—N288.94 (13)C2—C1—H1118.8
O5—Cd1—N394.10 (16)C3—C2—C1119.2 (5)
O1—Cd1—N387.79 (13)C3—C2—H2120.4
N2—Cd1—N369.31 (13)C1—C2—H2120.4
O5—Cd1—N1106.73 (17)C2—C3—C4119.0 (5)
O1—Cd1—N190.37 (14)C2—C3—H3120.5
N2—Cd1—N169.73 (12)C4—C3—H3120.5
N3—Cd1—N1139.02 (13)C5—C4—C3118.5 (5)
O5—Cd1—O277.34 (15)C5—C4—H4120.7
O1—Cd1—O281.82 (14)C3—C4—H4120.7
N2—Cd1—O2149.55 (11)N1—C5—C4122.8 (4)
N3—Cd1—O2138.56 (14)N1—C5—C6114.9 (4)
N1—Cd1—O281.32 (12)C4—C5—C6122.2 (4)
O5—Cd1—O372.18 (16)N2—C6—C7i118.7 (3)
O1—Cd1—O378.57 (14)N2—C6—C5114.5 (3)
N2—Cd1—O3152.93 (12)C7i—C6—C5126.8 (4)
N3—Cd1—O386.13 (13)N2—C7—C6i118.9 (4)
N1—Cd1—O3133.44 (13)N2—C7—C8114.7 (3)
O2—Cd1—O352.52 (12)C6i—C7—C8126.3 (3)
C13—O1—Cd1123.5 (3)N3—C8—C9122.4 (4)
C13—O1—H1B112 (3)N3—C8—C7114.9 (3)
Cd1—O1—H1B115 (4)C9—C8—C7122.6 (4)
N4—O2—Cd195.5 (3)C10—C9—C8118.9 (5)
N4—O3—Cd192.9 (2)C10—C9—H9120.6
N5—O5—Cd1108.2 (4)C8—C9—H9120.6
C5—N1—C1117.6 (4)C9—C10—C11119.1 (4)
C5—N1—Cd1113.9 (3)C9—C10—H10120.4
C1—N1—Cd1122.4 (3)C11—C10—H10120.4
C7—N2—C6122.3 (3)C12—C11—C10118.5 (4)
C7—N2—Cd1117.5 (3)C12—C11—H11120.7
C6—N2—Cd1117.3 (3)C10—C11—H11120.7
C8—N3—C12117.7 (4)N3—C12—C11122.8 (4)
C8—N3—Cd1116.4 (3)N3—C12—H12118.6
C12—N3—Cd1123.4 (3)C11—C12—H12118.6
O4—N4—O2121.2 (4)O1—C13—H13A109.5
O4—N4—O3120.5 (4)O1—C13—H13B109.5
O2—N4—O3118.2 (4)H13A—C13—H13B109.5
O6—N5—O7123.2 (9)O1—C13—H13C109.5
O6—N5—O5116.1 (6)H13A—C13—H13C109.5
O7—N5—O5120.6 (8)H13B—C13—H13C109.5
N1—C1—C2—C3−1.9 (10)C13—O1—Cd1—N319.8 (4)
C1—C2—C3—C42.8 (10)C13—O1—Cd1—N1158.9 (4)
C2—C3—C4—C50.4 (9)C13—O1—Cd1—O2−119.9 (4)
C3—C4—C5—N1−4.9 (8)C13—O1—Cd1—O3−66.7 (4)
C3—C4—C5—C6177.5 (5)C7—N2—Cd1—O594.7 (4)
N1—C5—C6—N2−36.5 (6)C6—N2—Cd1—O5−104.3 (4)
C4—C5—C6—N2141.4 (5)C7—N2—Cd1—O1−76.2 (3)
N1—C5—C6—C7i143.9 (5)C6—N2—Cd1—O184.8 (3)
C4—C5—C6—C7i−38.2 (7)C7—N2—Cd1—N311.8 (3)
N2—C7—C8—N331.1 (6)C6—N2—Cd1—N3172.8 (4)
C6i—C7—C8—N3−152.5 (4)C7—N2—Cd1—N1−167.0 (4)
N2—C7—C8—C9−145.2 (4)C6—N2—Cd1—N1−6.0 (3)
C6i—C7—C8—C931.2 (7)C7—N2—Cd1—O2−148.0 (3)
N3—C8—C9—C107.2 (7)C6—N2—Cd1—O213.0 (5)
C7—C8—C9—C10−176.8 (5)C7—N2—Cd1—O3−14.4 (5)
C8—C9—C10—C11−2.0 (8)C6—N2—Cd1—O3146.6 (3)
C9—C10—C11—C12−2.9 (8)C8—N3—Cd1—O5−114.3 (3)
C10—C11—C12—N33.1 (8)C12—N3—Cd1—O547.6 (4)
C4—C5—N1—C15.8 (8)C8—N3—Cd1—O195.3 (3)
C6—C5—N1—C1−176.4 (5)C12—N3—Cd1—O1−102.9 (4)
C4—C5—N1—Cd1−147.4 (4)C8—N3—Cd1—N25.6 (3)
C6—C5—N1—Cd130.5 (5)C12—N3—Cd1—N2167.4 (4)
C2—C1—N1—C5−2.4 (9)C8—N3—Cd1—N17.2 (5)
C2—C1—N1—Cd1148.4 (5)C12—N3—Cd1—N1169.1 (4)
C6i—C7—N2—C6−3.0 (7)C8—N3—Cd1—O2170.3 (3)
C8—C7—N2—C6173.7 (4)C12—N3—Cd1—O2−27.9 (5)
C6i—C7—N2—Cd1157.0 (3)C8—N3—Cd1—O3173.9 (3)
C8—C7—N2—Cd1−26.3 (5)C12—N3—Cd1—O3−24.2 (4)
C7i—C6—N2—C73.0 (7)C5—N1—Cd1—O5102.0 (3)
C5—C6—N2—C7−176.7 (4)C1—N1—Cd1—O5−49.8 (5)
C7i—C6—N2—Cd1−157.0 (3)C5—N1—Cd1—O1−102.5 (3)
C5—C6—N2—Cd123.3 (5)C1—N1—Cd1—O1105.8 (5)
C9—C8—N3—C12−7.0 (7)C5—N1—Cd1—N2−13.7 (3)
C7—C8—N3—C12176.7 (4)C1—N1—Cd1—N2−165.5 (5)
C9—C8—N3—Cd1155.9 (4)C5—N1—Cd1—N3−15.4 (5)
C7—C8—N3—Cd1−20.4 (5)C1—N1—Cd1—N3−167.2 (4)
C11—C12—N3—C81.7 (7)C5—N1—Cd1—O2175.9 (4)
C11—C12—N3—Cd1−159.9 (4)C1—N1—Cd1—O224.1 (5)
O4—N4—O2—Cd1171.9 (4)C5—N1—Cd1—O3−177.0 (3)
O3—N4—O2—Cd1−9.3 (5)C1—N1—Cd1—O331.3 (5)
O4—N4—O3—Cd1−172.1 (4)N4—O2—Cd1—O5−71.8 (3)
O2—N4—O3—Cd19.1 (5)N4—O2—Cd1—O187.1 (3)
O6—N5—O5—Cd1−12.9 (9)N4—O2—Cd1—N2160.8 (3)
O7—N5—O5—Cd1169.2 (6)N4—O2—Cd1—N39.9 (4)
N5—O5—Cd1—O1−154.5 (3)N4—O2—Cd1—N1178.8 (3)
N5—O5—Cd1—N244.2 (4)N4—O2—Cd1—O35.3 (3)
N5—O5—Cd1—N3112.8 (4)N4—O3—Cd1—O582.3 (3)
N5—O5—Cd1—N1−31.5 (4)N4—O3—Cd1—O1−93.6 (3)
N5—O5—Cd1—O2−108.3 (4)N4—O3—Cd1—N2−157.7 (3)
N5—O5—Cd1—O3−162.6 (4)N4—O3—Cd1—N3177.9 (3)
C13—O1—Cd1—O5−74.6 (5)N4—O3—Cd1—N1−14.1 (4)
C13—O1—Cd1—N289.2 (4)N4—O3—Cd1—O2−5.2 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1B···O3ii0.92 (5)1.87 (5)2.788 (5)172
O1—Cd12.330 (4)
O2—Cd12.431 (4)
O3—Cd12.476 (4)
O5—Cd12.305 (4)
N1—Cd12.407 (4)
N2—Cd12.359 (4)
N3—Cd12.393 (4)
O5—Cd1—O1150.47 (16)
O5—Cd1—N2119.29 (16)
O1—Cd1—N288.94 (13)
O5—Cd1—N394.10 (16)
O1—Cd1—N387.79 (13)
N2—Cd1—N369.31 (13)
O5—Cd1—N1106.73 (17)
O1—Cd1—N190.37 (14)
N2—Cd1—N169.73 (12)
N3—Cd1—N1139.02 (13)
O5—Cd1—O277.34 (15)
O1—Cd1—O281.82 (14)
N2—Cd1—O2149.55 (11)
N3—Cd1—O2138.56 (14)
N1—Cd1—O281.32 (12)
O5—Cd1—O372.18 (16)
O1—Cd1—O378.57 (14)
N2—Cd1—O3152.93 (12)
N3—Cd1—O386.13 (13)
N1—Cd1—O3133.44 (13)
O2—Cd1—O352.52 (12)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯O3i0.92 (5)1.87 (5)2.788 (5)172

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Mono-, di- and trinuclear 2,3,5,6-tetrakis(2-pyridyl)pyrazine (tppz)-containing copper(II) complexes: syntheses, crystal structures and magnetic properties.

Authors:  José Carranza; Jorunn Sletten; Conor Brennan; Francesc Lloret; Joan Cano; Miguel Julve
Journal:  Dalton Trans       Date:  2004-10-29       Impact factor: 4.390

  2 in total
  2 in total

1.  Dibromido(2,3,5,6-tetra-2-pyridyl-pyrazine-κN,N,N)zinc(II).

Authors:  Roya Ahmadi; Khadijeh Kalateh; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17

2.  Diiodido(2,3,5,6-tetrapyridin-2-yl-pyrazine-κN,N,N)zinc(II).

Authors:  Mohammad Yousefi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20
  2 in total

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