Literature DB >> 21203031

Dichlorido(dimethyl-formamide-κO)[1,4,7-tris-(2-cyano-ethyl)-1,4,7-triaza-cyclo-nonane-κN,N,N]cobalt(II).

Zhong Zhang1, Zhi-Rong Geng, Qun Zhao, Zhi-Lin Wang.   

Abstract

The title compound, [CoCl(2)(C(15)H(24)N(6))(C(3)H(7)NO)], crystallizes as a monomeric complex. The coordination environment around the Co(II) center could be described as a distorted octa-hedron consisting of three N donors from the facially coordinating triaza macrocyclic ligand, one O donor from dimethyl-formamide and two Cl(-) ions. Neutral complex mol-ecules are associated via inter-molecular C-H⋯Cl hydrogen bonds to form two-dimensional layers. C-H⋯O hydrogen bonds are also present.

Entities:  

Year:  2008        PMID: 21203031      PMCID: PMC2961961          DOI: 10.1107/S160053680802179X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Scarpellini et al. (2005 ▶); Tei et al. (1998 ▶, 2003 ▶).

Experimental

Crystal data

[CoCl2(C15H24N6)(C3H7NO)] M = 491.33 Monoclinic, a = 9.787 (2) Å b = 19.710 (5) Å c = 12.370 (3) Å β = 97.936 (4)° V = 2363.5 (10) Å3 Z = 4 Mo Kα radiation μ = 0.97 mm−1 T = 298 (2) K 0.32 × 0.26 × 0.24 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.746, T max = 0.800 12542 measured reflections 4630 independent reflections 3320 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.154 S = 1.07 4630 reflections 264 parameters H-atom parameters constrained Δρmax = 0.90 e Å−3 Δρmin = −0.78 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680802179X/ww2123sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802179X/ww2123Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C15H24N6)(C3H7NO)]F000 = 1028
Mr = 491.33Dx = 1.381 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 915 reflections
a = 9.787 (2) Åθ = 3.2–26.3º
b = 19.710 (5) ŵ = 0.98 mm1
c = 12.370 (3) ÅT = 298 (2) K
β = 97.936 (4)ºBlock, purple
V = 2363.5 (10) Å30.32 × 0.26 × 0.24 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer4630 independent reflections
Radiation source: sealed tube3320 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.052
T = 298(2) Kθmax = 26.0º
ω and φ scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Bruker, 2000)h = −11→12
Tmin = 0.746, Tmax = 0.800k = −22→24
12542 measured reflectionsl = −14→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.067H-atom parameters constrained
wR(F2) = 0.154  w = 1/[σ2(Fo2) + (0.0683P)2 + 1.5989P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
4630 reflectionsΔρmax = 0.90 e Å3
264 parametersΔρmin = −0.78 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2270 (4)0.8211 (2)0.3872 (3)0.0324 (9)
H1A0.24220.78030.43110.039*
H1B0.22740.85950.43640.039*
C20.3432 (4)0.8292 (2)0.3190 (4)0.0361 (10)
H2A0.33940.87440.28780.043*
H2B0.43080.82450.36580.043*
C30.3572 (5)0.7079 (2)0.2715 (3)0.0379 (10)
H3A0.35390.70750.34950.046*
H3B0.44790.69230.25940.046*
C40.2498 (5)0.6602 (2)0.2164 (4)0.0389 (10)
H4A0.26580.65310.14150.047*
H4B0.25860.61670.25330.047*
C50.0698 (5)0.6922 (2)0.3276 (4)0.0373 (10)
H5A0.15100.68600.38120.045*
H5B0.00490.65640.33810.045*
C60.0060 (4)0.7591 (2)0.3466 (3)0.0303 (9)
H6A−0.08400.76170.30280.036*
H6B−0.00720.76240.42270.036*
C70.0145 (4)0.8814 (2)0.3205 (3)0.0304 (9)
H7A−0.05350.88300.25560.037*
H7B0.07900.91820.31480.037*
C8−0.0598 (5)0.8954 (3)0.4193 (3)0.0381 (10)
H8A−0.10460.93930.40880.046*
H8B−0.13180.86170.42010.046*
C90.0240 (6)0.8954 (3)0.5263 (4)0.0466 (12)
C100.4320 (4)0.7942 (3)0.1517 (3)0.0385 (10)
H10A0.39920.83460.11150.046*
H10B0.42950.75720.09970.046*
C110.5839 (5)0.8060 (3)0.2025 (4)0.0446 (12)
H11A0.60460.77770.26690.054*
H11B0.64420.79200.15050.054*
C120.6122 (6)0.8753 (3)0.2321 (5)0.0509 (13)
C130.0065 (5)0.6472 (2)0.1419 (4)0.0413 (11)
H13A0.02780.65330.06830.050*
H13B−0.08320.66750.14470.050*
C14−0.0065 (6)0.5711 (2)0.1614 (5)0.0510 (13)
H14A−0.00610.56360.23900.061*
H14B−0.09500.55590.12440.061*
C150.0989 (6)0.5305 (3)0.1257 (5)0.0522 (13)
C160.1312 (5)0.9111 (2)0.0171 (4)0.0413 (11)
H160.06710.8850−0.02740.050*
C170.2703 (6)1.0089 (3)0.0374 (5)0.0666 (17)
H17A0.28680.99340.11160.100*
H17B0.23741.05480.03550.100*
H17C0.35461.00680.00600.100*
C180.1187 (6)0.9877 (3)−0.1311 (5)0.0618 (16)
H18A0.04840.9566−0.16170.093*
H18B0.19240.9880−0.17490.093*
H18C0.08021.0325−0.12960.093*
Cl10.17722 (12)0.74778 (6)−0.02560 (9)0.0444 (3)
Cl2−0.11597 (11)0.80786 (5)0.07777 (8)0.0339 (2)
Co10.12259 (6)0.78880 (3)0.14939 (5)0.03397 (19)
N10.0910 (4)0.81680 (18)0.3190 (3)0.0329 (8)
N20.3359 (4)0.77830 (18)0.2297 (3)0.0371 (9)
N30.1097 (4)0.68609 (18)0.2168 (3)0.0319 (8)
N40.0843 (4)0.8938 (2)0.6097 (3)0.0441 (10)
N50.6313 (5)0.9298 (2)0.2543 (4)0.0551 (12)
N60.1858 (5)0.4987 (2)0.0935 (4)0.0492 (10)
N70.1708 (4)0.9672 (2)−0.0227 (3)0.0470 (10)
O10.1717 (3)0.88941 (16)0.1096 (2)0.0372 (7)
U11U22U33U12U13U23
C10.030 (2)0.039 (2)0.025 (2)0.0038 (18)−0.0088 (16)−0.0029 (17)
C20.029 (2)0.042 (2)0.036 (2)−0.0020 (18)−0.0027 (17)0.0042 (19)
C30.039 (2)0.049 (3)0.024 (2)0.014 (2)−0.0005 (18)−0.0011 (19)
C40.046 (3)0.035 (2)0.036 (2)0.013 (2)0.006 (2)0.0042 (19)
C50.046 (3)0.035 (2)0.032 (2)0.001 (2)0.0073 (19)0.0015 (19)
C60.025 (2)0.041 (2)0.0255 (19)0.0005 (18)0.0034 (15)0.0055 (17)
C70.025 (2)0.041 (2)0.024 (2)0.0045 (17)−0.0016 (16)−0.0021 (17)
C80.033 (2)0.050 (3)0.034 (2)0.004 (2)0.0127 (19)0.001 (2)
C90.056 (3)0.055 (3)0.033 (3)0.004 (2)0.018 (2)−0.008 (2)
C100.032 (2)0.056 (3)0.026 (2)0.001 (2)−0.0023 (17)−0.005 (2)
C110.023 (2)0.065 (3)0.045 (3)0.000 (2)0.0059 (19)0.004 (2)
C120.042 (3)0.044 (3)0.069 (4)−0.005 (2)0.016 (3)0.001 (3)
C130.040 (3)0.041 (3)0.042 (3)−0.002 (2)0.003 (2)0.001 (2)
C140.055 (3)0.042 (3)0.056 (3)−0.003 (2)0.007 (2)−0.001 (2)
C150.045 (3)0.048 (3)0.061 (3)0.006 (2)−0.002 (2)−0.010 (3)
C160.047 (3)0.037 (2)0.039 (3)−0.002 (2)0.003 (2)0.012 (2)
C170.061 (4)0.070 (4)0.060 (4)−0.030 (3)−0.023 (3)0.017 (3)
C180.061 (4)0.063 (3)0.062 (4)−0.003 (3)0.009 (3)0.038 (3)
Cl10.0365 (6)0.0568 (7)0.0392 (6)0.0011 (5)0.0027 (4)−0.0050 (5)
Cl20.0330 (6)0.0353 (5)0.0324 (5)−0.0002 (4)0.0005 (4)0.0006 (4)
Co10.0342 (3)0.0336 (3)0.0330 (3)−0.0002 (2)0.0007 (2)0.0012 (2)
N10.0301 (19)0.0342 (18)0.0343 (19)0.0050 (15)0.0037 (15)0.0049 (15)
N20.035 (2)0.0317 (19)0.046 (2)0.0012 (15)0.0081 (17)0.0029 (16)
N30.034 (2)0.0365 (18)0.0241 (17)−0.0024 (16)0.0012 (14)0.0022 (15)
N40.042 (2)0.052 (2)0.038 (2)−0.0023 (19)0.0052 (18)−0.0134 (19)
N50.050 (3)0.060 (3)0.060 (3)−0.011 (2)0.024 (2)−0.011 (2)
N60.047 (3)0.045 (2)0.052 (2)0.006 (2)−0.002 (2)−0.014 (2)
N70.042 (2)0.055 (2)0.042 (2)−0.012 (2)−0.0004 (17)0.0153 (19)
O10.0345 (17)0.0401 (17)0.0354 (17)−0.0036 (14)−0.0015 (13)0.0082 (14)
C1—N11.477 (5)C10—H10A0.9700
C1—C21.515 (6)C10—H10B0.9700
C1—H1A0.9700C11—C121.432 (8)
C1—H1B0.9700C11—H11A0.9700
C2—N21.487 (6)C11—H11B0.9700
C2—H2A0.9700C12—N51.119 (6)
C2—H2B0.9700C13—N31.486 (6)
C3—N21.486 (6)C13—C141.526 (7)
C3—C41.501 (7)C13—H13A0.9700
C3—H3A0.9700C13—H13B0.9700
C3—H3B0.9700C14—C151.423 (7)
C4—N31.464 (6)C14—H14A0.9700
C4—H4A0.9700C14—H14B0.9700
C4—H4B0.9700C15—N61.170 (6)
C5—N31.481 (5)C16—O11.235 (5)
C5—C61.491 (6)C16—N71.291 (6)
C5—H5A0.9700C16—H160.9300
C5—H5B0.9700C17—N71.405 (6)
C6—N11.477 (5)C17—H17A0.9600
C6—H6A0.9700C17—H17B0.9600
C6—H6B0.9700C17—H17C0.9600
C7—N11.478 (5)C18—N71.426 (6)
C7—C81.531 (6)C18—H18A0.9600
C7—H7A0.9700C18—H18B0.9600
C7—H7B0.9700C18—H18C0.9600
C8—C91.458 (7)Cl1—Co12.4382 (14)
C8—H8A0.9700Cl2—Co12.4096 (13)
C8—H8B0.9700Co1—O12.114 (3)
C9—N41.116 (6)Co1—N22.194 (4)
C10—N21.470 (6)Co1—N32.200 (4)
C10—C111.550 (6)Co1—N12.232 (4)
N1—C1—C2112.0 (3)C14—C13—H13A107.8
N1—C1—H1A109.2N3—C13—H13B107.8
C2—C1—H1A109.2C14—C13—H13B107.8
N1—C1—H1B109.2H13A—C13—H13B107.1
C2—C1—H1B109.2C15—C14—C13115.1 (5)
H1A—C1—H1B107.9C15—C14—H14A108.5
N2—C2—C1112.4 (4)C13—C14—H14A108.5
N2—C2—H2A109.1C15—C14—H14B108.5
C1—C2—H2A109.1C13—C14—H14B108.5
N2—C2—H2B109.1H14A—C14—H14B107.5
C1—C2—H2B109.1N6—C15—C14177.6 (6)
H2A—C2—H2B107.9O1—C16—N7125.1 (5)
N2—C3—C4111.7 (3)O1—C16—H16117.5
N2—C3—H3A109.3N7—C16—H16117.5
C4—C3—H3A109.3N7—C17—H17A109.5
N2—C3—H3B109.3N7—C17—H17B109.5
C4—C3—H3B109.3H17A—C17—H17B109.5
H3A—C3—H3B107.9N7—C17—H17C109.5
N3—C4—C3112.2 (4)H17A—C17—H17C109.5
N3—C4—H4A109.2H17B—C17—H17C109.5
C3—C4—H4A109.2N7—C18—H18A109.5
N3—C4—H4B109.2N7—C18—H18B109.5
C3—C4—H4B109.2H18A—C18—H18B109.5
H4A—C4—H4B107.9N7—C18—H18C109.5
N3—C5—C6112.8 (3)H18A—C18—H18C109.5
N3—C5—H5A109.0H18B—C18—H18C109.5
C6—C5—H5A109.0O1—Co1—N287.78 (12)
N3—C5—H5B109.0O1—Co1—N3168.01 (13)
C6—C5—H5B109.0N2—Co1—N380.93 (13)
H5A—C5—H5B107.8O1—Co1—N193.00 (13)
N1—C6—C5112.5 (3)N2—Co1—N181.07 (14)
N1—C6—H6A109.1N3—Co1—N181.30 (13)
C5—C6—H6A109.1O1—Co1—Cl290.45 (9)
N1—C6—H6B109.1N2—Co1—Cl2173.80 (10)
C5—C6—H6B109.1N3—Co1—Cl2100.34 (10)
H6A—C6—H6B107.8N1—Co1—Cl293.09 (10)
N1—C7—C8117.6 (4)O1—Co1—Cl191.12 (9)
N1—C7—H7A107.9N2—Co1—Cl193.38 (10)
C8—C7—H7A107.9N3—Co1—Cl193.58 (10)
N1—C7—H7B107.9N1—Co1—Cl1172.94 (10)
C8—C7—H7B107.9Cl2—Co1—Cl192.60 (4)
H7A—C7—H7B107.2C6—N1—C1113.8 (3)
C9—C8—C7117.1 (4)C6—N1—C7111.0 (3)
C9—C8—H8A108.0C1—N1—C7111.2 (3)
C7—C8—H8A108.0C6—N1—Co1100.5 (2)
C9—C8—H8B108.0C1—N1—Co1108.7 (3)
C7—C8—H8B108.0C7—N1—Co1111.2 (2)
H8A—C8—H8B107.3C10—N2—C3110.8 (3)
N4—C9—C8177.2 (6)C10—N2—C2112.0 (3)
N2—C10—C11115.5 (4)C3—N2—C2112.4 (3)
N2—C10—H10A108.4C10—N2—Co1109.8 (3)
C11—C10—H10A108.4C3—N2—Co1109.0 (3)
N2—C10—H10B108.4C2—N2—Co1102.6 (3)
C11—C10—H10B108.4C4—N3—C5113.5 (3)
H10A—C10—H10B107.5C4—N3—C13112.0 (3)
C12—C11—C10112.8 (4)C5—N3—C13112.0 (4)
C12—C11—H11A109.0C4—N3—Co1102.5 (3)
C10—C11—H11A109.0C5—N3—Co1108.2 (3)
C12—C11—H11B109.0C13—N3—Co1108.0 (3)
C10—C11—H11B109.0C16—N7—C17121.4 (4)
H11A—C11—H11B107.8C16—N7—C18120.9 (5)
N5—C12—C11178.4 (7)C17—N7—C18117.6 (4)
N3—C13—C14118.2 (4)C16—O1—Co1119.1 (3)
N3—C13—H13A107.8
D—H···AD—HH···AD···AD—H···A
C1—H1A···Cl2i0.972.753.658 (4)157
C2—H2A···O10.972.583.120 (5)116
C3—H3A···Cl2i0.972.813.774 (4)170
C7—H7A···Cl20.972.653.419 (4)136
C10—H10A···O10.972.473.149 (6)127
C10—H10B···Cl10.972.733.218 (4)111
C11—H11A···Cl1i0.972.623.525 (5)156
C11—H11B···Cl2ii0.972.653.502 (5)147
C13—H13A···Cl10.972.723.460 (5)133
C16—H16···Cl20.932.803.325 (5)117
C17—H17A···O10.962.342.741 (7)105
Cl1—Co12.4382 (14)
Cl2—Co12.4096 (13)
Co1—O12.114 (3)
Co1—N22.194 (4)
Co1—N32.200 (4)
Co1—N12.232 (4)
O1—Co1—N287.78 (12)
O1—Co1—N3168.01 (13)
N2—Co1—N380.93 (13)
O1—Co1—N193.00 (13)
N2—Co1—N181.07 (14)
N3—Co1—N181.30 (13)
O1—Co1—Cl290.45 (9)
N2—Co1—Cl2173.80 (10)
N3—Co1—Cl2100.34 (10)
N1—Co1—Cl293.09 (10)
O1—Co1—Cl191.12 (9)
N2—Co1—Cl193.38 (10)
N3—Co1—Cl193.58 (10)
N1—Co1—Cl1172.94 (10)
Cl2—Co1—Cl192.60 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯Cl2i0.972.753.658 (4)157
C2—H2A⋯O10.972.583.120 (5)116
C3—H3A⋯Cl2i0.972.813.774 (4)170
C7—H7A⋯Cl20.972.653.419 (4)136
C10—H10A⋯O10.972.473.149 (6)127
C10—H10B⋯Cl10.972.733.218 (4)111
C11—H11A⋯Cl1i0.972.623.525 (5)156
C11—H11B⋯Cl2ii0.972.653.502 (5)147
C13—H13A⋯Cl10.972.723.460 (5)133
C16—H16⋯Cl20.932.803.325 (5)117
C17—H17A⋯O10.962.342.741 (7)105

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Corroborative models of the cobalt(II) inhibited Fe/Mn superoxide dismutases.

Authors:  Marciela Scarpellini; Amy J Wu; Jeff W Kampf; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2005-07-11       Impact factor: 5.165

  2 in total
  1 in total

1.  Dichlorido(dimethyl-formamide-κO)[1,4,7-tris-(2-cyano-ethyl)-1,4,7-triaza-cyclo-nonane-κN,N,N]nickel(II).

Authors:  Zhong Zhang; Li-Zhen Wu; Zhi-Rong Geng; Zhi-Lin Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  1 in total

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