Literature DB >> 21202988

Unusual hemiacetal structure derived from Salvinorin A.

Paulo Carvalho, Ruslan Bikbulatov, Jordan K Zjawiony, Mitchell A Avery.   

Abstract

The salvinorin A analog dimethyl (2R,3aR,4R,6aR,7R,9S,9aS,9bS)-2-(3-fur-yl)-9,9a-dihydr-oxy-3a,6a-dimethyl-dodeca-hydro-benzo[de]chromene-4,7-dicarboxyl-ate, C(22)H(30)O(8), has a relatively simple spatial arrangement in which mol-ecules are linked into layers by two pairs of O-H⋯O hydrogen bonds. Each mol-ecule has as the central feature a dodeca-hydro-1H-phenalene ring system. Its three six-membered rings are in the chair conformation, with two axial methyl groups, one axial OH, and one equatorial OH, these OH groups being directly responsible for linking of the mol-ecules in the crystal structure.

Entities:  

Year:  2008        PMID: 21202988      PMCID: PMC2961764          DOI: 10.1107/S160053680800144X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of analogs of salvinorin A, see: Bikbulatov et al. (2007 ▶); Lee et al. (2006 ▶); Beguin et al. (2006 ▶); Stewart et al. (2006 ▶) and references cited therein. For modifications of salvinorin A with changed pharmacological profile, see: Rothman et al. (2007 ▶); Groer et al. (2007 ▶); Tidgewell et al. (2006 ▶); Harding et al. (2005 ▶, 2006 ▶).

Experimental

Crystal data

C22H30O8 M = 422.46 Monoclinic, a = 11.6801 (5) Å b = 6.0522 (3) Å c = 15.3739 (6) Å β = 107.678 (2)° V = 1035.47 (8) Å3 Z = 2 Cu Kα radiation μ = 0.86 mm−1 T = 296 (2) K 0.32 × 0.15 × 0.13 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 18724 measured reflections 3726 independent reflections 3615 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.096 S = 1.05 3726 reflections 277 parameters 1 restraint H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1587 Friedel pairs Flack parameter: 0.14 (18) Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680800144X/gw2037sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680800144X/gw2037Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H30O8F000 = 452
Mr = 422.46Dx = 1.355 Mg m3
Monoclinic, P21Cu Kα radiation λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 8551 reflections
a = 11.6801 (5) Åθ = 3.0–69.4º
b = 6.0522 (3) ŵ = 0.86 mm1
c = 15.3739 (6) ÅT = 296 (2) K
β = 107.678 (2)ºBlocks, colourless
V = 1035.47 (8) Å30.32 × 0.15 × 0.13 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3615 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.037
T = 100 Kθmax = 69.4º
phi and ω scansθmin = 3.0º
Absorption correction: noneh = −13→13
18724 measured reflectionsk = −7→7
3726 independent reflectionsl = −18→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.037  w = 1/[σ2(Fo2) + (0.0458P)2 + 0.4492P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.096(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.42 e Å3
3726 reflectionsΔρmin = −0.21 e Å3
277 parametersExtinction correction: none
1 restraintAbsolute structure: Flack (1983), 1587 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.14 (18)
Secondary atom site location: difference Fourier map
Experimental. The structure was solved using Direct methods and difference Fourier techniques SHELXTL, V6.12 (Bruker, 2003). Hydrogen atoms were placed in their expected chemical positions using the HFIX command and were included in the final cycles of least squares with isotropic Uij related to the atoms ridden upon. All non-hydrogen atoms were refined anisotropically.Structure solution, refinement, graphics and generation of publication materials were performed by using SHELXTL, V6.12 software. Additional details of data collection and structure refinement are given in Table 1.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.18522 (17)0.9011 (4)0.91971 (13)0.0308 (5)
H20.15710.74820.91840.037*
C50.15034 (17)0.9159 (3)0.58226 (12)0.0226 (4)
H5A0.11710.76900.56680.027*
H5B0.12261.00760.52820.027*
C30.12566 (17)1.0070 (4)0.82782 (12)0.0261 (4)
H3A0.15521.15680.82810.031*
H3B0.03961.01440.81760.031*
C60.28737 (16)0.9033 (3)0.61198 (12)0.0217 (4)
H6A0.31951.05210.62240.026*
H6B0.31220.84010.56260.026*
C40.10549 (16)1.0123 (3)0.65832 (12)0.0209 (4)
H40.13801.16220.67110.025*
C80.54094 (17)0.7152 (4)0.82950 (13)0.0283 (4)
H8A0.52860.55680.83020.034*
H8B0.62680.74280.84720.034*
C90.48763 (17)0.8258 (3)0.89657 (12)0.0256 (4)
H90.49710.98570.89140.031*
C70.48158 (17)0.8048 (3)0.73302 (12)0.0230 (4)
H70.49500.96480.73490.028*
C3A0.15070 (16)0.8761 (3)0.74901 (11)0.0202 (4)
C6A0.34211 (16)0.7655 (3)0.69886 (12)0.0197 (4)
C9A0.35251 (18)0.7770 (3)0.87112 (13)0.0239 (4)
C9B0.29098 (16)0.8644 (3)0.77341 (11)0.0191 (4)
H9B0.31541.01980.77670.023*
C100.16237 (19)1.0186 (5)0.99865 (14)0.0448 (7)
C120.1441 (3)1.0759 (8)1.13703 (17)0.0705 (12)
H120.14331.05391.19670.085*
C110.1675 (3)0.9226 (8)1.0830 (2)0.0778 (12)
H110.18460.77511.09850.093*
C130.1359 (3)1.2334 (7)1.00599 (18)0.0751 (12)
H130.12811.34140.96150.090*
C16−0.03024 (17)1.0299 (3)0.62641 (12)0.0252 (4)
C180.54524 (17)0.7069 (4)0.66942 (13)0.0261 (4)
C140.08432 (17)0.6535 (3)0.73785 (13)0.0257 (4)
H14A0.12700.55480.78560.039*
H14B0.08010.59060.67960.039*
H14C0.00450.67630.74140.039*
C150.31545 (17)0.5190 (3)0.67784 (13)0.0259 (4)
H15A0.23160.50000.64600.039*
H15B0.33590.43700.73390.039*
H15C0.36230.46610.64050.039*
C190.6056 (3)0.7648 (5)0.53744 (18)0.0490 (7)
H19A0.68980.74270.56720.073*
H19B0.59510.87010.48900.073*
H19C0.56920.62700.51280.073*
C17−0.1957 (2)1.2172 (6)0.65095 (18)0.0505 (7)
H17A−0.23221.24190.58680.076*
H17B−0.21221.34040.68460.076*
H17C−0.22791.08480.66880.076*
O10.31411 (11)0.9003 (3)0.93685 (8)0.0273 (3)
O30.32773 (13)0.5526 (2)0.87711 (9)0.0286 (3)
H30.37090.50300.92560.043*
O5−0.09773 (12)0.9134 (3)0.57030 (10)0.0352 (4)
O6−0.06776 (13)1.1939 (3)0.66985 (10)0.0349 (4)
O20.54549 (13)0.7663 (3)0.98856 (9)0.0311 (3)
H2A0.59350.66630.99020.047*
O70.58818 (15)0.5249 (3)0.67619 (11)0.0429 (4)
O80.54884 (15)0.8474 (3)0.60324 (11)0.0383 (4)
O40.1223 (2)1.2643 (7)1.09199 (17)0.1192 (16)
U11U22U33U12U13U23
C20.0193 (9)0.0538 (13)0.0210 (9)−0.0075 (10)0.0087 (7)−0.0039 (9)
C50.0235 (9)0.0264 (9)0.0172 (8)−0.0001 (8)0.0053 (7)0.0016 (7)
C30.0159 (9)0.0401 (11)0.0237 (9)−0.0026 (8)0.0078 (7)−0.0048 (9)
C60.0233 (9)0.0242 (9)0.0195 (8)−0.0030 (8)0.0093 (7)−0.0008 (7)
C40.0202 (9)0.0206 (9)0.0226 (9)−0.0014 (7)0.0074 (7)−0.0020 (7)
C80.0190 (9)0.0402 (12)0.0239 (9)0.0031 (8)0.0037 (8)−0.0023 (8)
C90.0222 (10)0.0362 (11)0.0178 (8)−0.0017 (8)0.0051 (7)−0.0020 (8)
C70.0198 (9)0.0281 (10)0.0215 (9)−0.0020 (8)0.0067 (7)−0.0046 (7)
C3A0.0161 (9)0.0257 (9)0.0185 (8)−0.0028 (7)0.0050 (7)−0.0016 (7)
C6A0.0174 (9)0.0236 (9)0.0180 (8)−0.0013 (7)0.0054 (7)−0.0011 (7)
C9A0.0222 (10)0.0311 (10)0.0199 (8)−0.0026 (8)0.0084 (7)0.0001 (8)
C9B0.0174 (9)0.0207 (9)0.0190 (8)−0.0034 (7)0.0053 (7)−0.0003 (7)
C100.0168 (10)0.098 (2)0.0218 (10)−0.0058 (12)0.0089 (8)−0.0109 (12)
C120.0373 (15)0.160 (4)0.0190 (11)0.0052 (19)0.0150 (10)−0.0089 (18)
C110.082 (2)0.126 (3)0.0380 (15)−0.036 (2)0.0370 (15)−0.0145 (18)
C130.072 (2)0.120 (3)0.0285 (13)0.050 (2)0.0076 (13)−0.0206 (16)
C160.0219 (9)0.0290 (10)0.0249 (9)0.0025 (8)0.0075 (8)0.0039 (8)
C180.0175 (9)0.0341 (11)0.0254 (9)0.0010 (8)0.0048 (7)−0.0053 (8)
C140.0209 (9)0.0306 (10)0.0243 (9)−0.0062 (8)0.0048 (7)0.0024 (8)
C150.0252 (10)0.0257 (10)0.0254 (9)0.0003 (8)0.0060 (8)−0.0028 (8)
C190.0518 (16)0.0625 (17)0.0461 (13)0.0102 (13)0.0350 (12)0.0024 (13)
C170.0283 (11)0.0711 (18)0.0494 (14)0.0197 (12)0.0077 (11)−0.0069 (13)
O10.0180 (7)0.0454 (8)0.0191 (6)−0.0045 (6)0.0066 (5)−0.0041 (6)
O30.0278 (7)0.0308 (7)0.0235 (6)−0.0033 (6)0.0022 (5)0.0080 (6)
O50.0237 (7)0.0461 (9)0.0313 (7)−0.0011 (7)0.0015 (6)−0.0102 (7)
O60.0259 (7)0.0379 (8)0.0393 (8)0.0089 (7)0.0074 (6)−0.0058 (7)
O20.0292 (8)0.0361 (8)0.0244 (7)0.0024 (6)0.0027 (6)−0.0009 (6)
O70.0443 (9)0.0492 (10)0.0389 (8)0.0204 (8)0.0181 (7)0.0006 (8)
O80.0409 (9)0.0458 (10)0.0395 (8)0.0042 (7)0.0290 (7)0.0025 (7)
O40.0566 (14)0.244 (5)0.0456 (13)0.063 (2)−0.0011 (11)−0.063 (2)
C2—O11.447 (2)C9A—O11.433 (2)
C2—C101.499 (3)C9A—C9B1.548 (2)
C2—C31.515 (3)C9B—H9B0.9800
C2—H20.9800C10—C131.349 (5)
C5—C61.527 (3)C10—C111.405 (4)
C5—C41.535 (2)C12—O41.318 (6)
C5—H5A0.9700C12—C111.328 (5)
C5—H5B0.9700C12—H120.9300
C3—C3A1.548 (3)C11—H110.9300
C3—H3A0.9700C13—O41.391 (3)
C3—H3B0.9700C13—H130.9300
C6—C6A1.540 (2)C16—O51.204 (2)
C6—H6A0.9700C16—O61.342 (3)
C6—H6B0.9700C18—O71.202 (3)
C4—C161.514 (2)C18—O81.336 (3)
C4—C3A1.567 (2)C14—H14A0.9600
C4—H40.9800C14—H14B0.9600
C8—C91.513 (3)C14—H14C0.9600
C8—C71.533 (3)C15—H15A0.9600
C8—H8A0.9700C15—H15B0.9600
C8—H8B0.9700C15—H15C0.9600
C9—O21.416 (2)C19—O81.456 (3)
C9—C9A1.535 (3)C19—H19A0.9600
C9—H90.9800C19—H19B0.9600
C7—C181.517 (3)C19—H19C0.9600
C7—C6A1.571 (2)C17—O61.440 (3)
C7—H70.9800C17—H17A0.9600
C3A—C141.538 (3)C17—H17B0.9600
C3A—C9B1.568 (2)C17—H17C0.9600
C6A—C151.538 (3)O3—H30.8200
C6A—C9B1.563 (2)O2—H2A0.8200
C9A—O31.398 (2)
O1—C2—C10106.57 (15)O3—C9A—O1110.13 (15)
O1—C2—C3109.20 (15)O3—C9A—C9112.80 (17)
C10—C2—C3114.2 (2)O1—C9A—C9103.77 (15)
O1—C2—H2108.9O3—C9A—C9B110.57 (15)
C10—C2—H2108.9O1—C9A—C9B110.73 (15)
C3—C2—H2108.9C9—C9A—C9B108.67 (15)
C6—C5—C4111.12 (14)C9A—C9B—C6A114.36 (15)
C6—C5—H5A109.4C9A—C9B—C3A113.02 (14)
C4—C5—H5A109.4C6A—C9B—C3A116.49 (14)
C6—C5—H5B109.4C9A—C9B—H9B103.6
C4—C5—H5B109.4C6A—C9B—H9B103.6
H5A—C5—H5B108.0C3A—C9B—H9B103.6
C2—C3—C3A111.77 (17)C13—C10—C11105.5 (3)
C2—C3—H3A109.3C13—C10—C2128.8 (3)
C3A—C3—H3A109.3C11—C10—C2125.6 (3)
C2—C3—H3B109.3O4—C12—C11108.6 (3)
C3A—C3—H3B109.3O4—C12—H12125.7
H3A—C3—H3B107.9C11—C12—H12125.7
C5—C6—C6A114.07 (15)C12—C11—C10109.2 (4)
C5—C6—H6A108.7C12—C11—H11125.4
C6A—C6—H6A108.7C10—C11—H11125.4
C5—C6—H6B108.7C10—C13—O4107.7 (3)
C6A—C6—H6B108.7C10—C13—H13126.1
H6A—C6—H6B107.6O4—C13—H13126.1
C16—C4—C5110.25 (14)O5—C16—O6123.23 (18)
C16—C4—C3A111.23 (15)O5—C16—C4125.74 (18)
C5—C4—C3A112.15 (15)O6—C16—C4111.03 (16)
C16—C4—H4107.7O7—C18—O8122.7 (2)
C5—C4—H4107.7O7—C18—C7125.1 (2)
C3A—C4—H4107.7O8—C18—C7112.15 (17)
C9—C8—C7110.12 (16)C3A—C14—H14A109.5
C9—C8—H8A109.6C3A—C14—H14B109.5
C7—C8—H8A109.6H14A—C14—H14B109.5
C9—C8—H8B109.6C3A—C14—H14C109.5
C7—C8—H8B109.6H14A—C14—H14C109.5
H8A—C8—H8B108.2H14B—C14—H14C109.5
O2—C9—C8113.43 (16)C6A—C15—H15A109.5
O2—C9—C9A110.34 (15)C6A—C15—H15B109.5
C8—C9—C9A110.20 (15)H15A—C15—H15B109.5
O2—C9—H9107.5C6A—C15—H15C109.5
C8—C9—H9107.5H15A—C15—H15C109.5
C9A—C9—H9107.5H15B—C15—H15C109.5
C18—C7—C8108.61 (16)O8—C19—H19A109.5
C18—C7—C6A112.77 (14)O8—C19—H19B109.5
C8—C7—C6A112.85 (15)H19A—C19—H19B109.5
C18—C7—H7107.4O8—C19—H19C109.5
C8—C7—H7107.4H19A—C19—H19C109.5
C6A—C7—H7107.4H19B—C19—H19C109.5
C14—C3A—C3109.09 (16)O6—C17—H17A109.5
C14—C3A—C4109.84 (14)O6—C17—H17B109.5
C3—C3A—C4109.53 (15)H17A—C17—H17B109.5
C14—C3A—C9B116.24 (16)O6—C17—H17C109.5
C3—C3A—C9B105.55 (14)H17A—C17—H17C109.5
C4—C3A—C9B106.38 (14)H17B—C17—H17C109.5
C15—C6A—C6109.81 (15)C9A—O1—C2113.84 (14)
C15—C6A—C9B115.31 (16)C9A—O3—H3109.5
C6—C6A—C9B106.15 (14)C16—O6—C17116.61 (17)
C15—C6A—C7109.91 (15)C9—O2—H2A109.5
C6—C6A—C7108.86 (15)C18—O8—C19115.88 (19)
C9B—C6A—C7106.57 (13)C12—O4—C13108.9 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.821.992.757 (2)155
O2—H2A···O1i0.822.072.787 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.821.992.757 (2)155
O2—H2A⋯O1i0.822.072.787 (2)146

Symmetry code: (i) .

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Journal:  Org Lett       Date:  2005-07-07       Impact factor: 6.005

10.  An opioid agonist that does not induce mu-opioid receptor--arrestin interactions or receptor internalization.

Authors:  C E Groer; K Tidgewell; R A Moyer; W W Harding; R B Rothman; T E Prisinzano; L M Bohn
Journal:  Mol Pharmacol       Date:  2006-11-07       Impact factor: 4.436

  10 in total

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