| Literature DB >> 21202988 |
Paulo Carvalho, Ruslan Bikbulatov, Jordan K Zjawiony, Mitchell A Avery.
Abstract
The salvinorin A analog dimethyl (2R,3aR,4R,6aR,7R,9S,9aS,9bS)-2-(3-fur-yl)-9,9a-dihydr-oxy-3a,6a-dimethyl-dodeca-hydro-benzo[de]chromene-4,7-dicarboxyl-ate, C(22)H(30)O(8), has a relatively simple spatial arrangement in which mol-ecules are linked into layers by two pairs of O-H⋯O hydrogen bonds. Each mol-ecule has as the central feature a dodeca-hydro-1H-phenalene ring system. Its three six-membered rings are in the chair conformation, with two axial methyl groups, one axial OH, and one equatorial OH, these OH groups being directly responsible for linking of the mol-ecules in the crystal structure.Entities:
Year: 2008 PMID: 21202988 PMCID: PMC2961764 DOI: 10.1107/S160053680800144X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C22H30O8 | |
| Monoclinic, | Cu |
| Hall symbol: P 2yb | Cell parameters from 8551 reflections |
| θ = 3.0–69.4º | |
| µ = 0.86 mm−1 | |
| β = 107.678 (2)º | Blocks, colourless |
| 0.32 × 0.15 × 0.13 mm | |
| Bruker SMART CCD area-detector diffractometer | 3615 reflections with |
| Monochromator: graphite | |
| θmax = 69.4º | |
| phi and ω scans | θmin = 3.0º |
| Absorption correction: none | |
| 18724 measured reflections | |
| 3726 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.42 e Å−3 | |
| 3726 reflections | Δρmin = −0.21 e Å−3 |
| 277 parameters | Extinction correction: none |
| 1 restraint | Absolute structure: Flack (1983), 1587 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.14 (18) |
| Secondary atom site location: difference Fourier map |
| Experimental. The structure was solved using Direct methods and difference Fourier techniques
|
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C2 | 0.18522 (17) | 0.9011 (4) | 0.91971 (13) | 0.0308 (5) | |
| H2 | 0.1571 | 0.7482 | 0.9184 | 0.037* | |
| C5 | 0.15034 (17) | 0.9159 (3) | 0.58226 (12) | 0.0226 (4) | |
| H5A | 0.1171 | 0.7690 | 0.5668 | 0.027* | |
| H5B | 0.1226 | 1.0076 | 0.5282 | 0.027* | |
| C3 | 0.12566 (17) | 1.0070 (4) | 0.82782 (12) | 0.0261 (4) | |
| H3A | 0.1552 | 1.1568 | 0.8281 | 0.031* | |
| H3B | 0.0396 | 1.0144 | 0.8176 | 0.031* | |
| C6 | 0.28737 (16) | 0.9033 (3) | 0.61198 (12) | 0.0217 (4) | |
| H6A | 0.3195 | 1.0521 | 0.6224 | 0.026* | |
| H6B | 0.3122 | 0.8401 | 0.5626 | 0.026* | |
| C4 | 0.10549 (16) | 1.0123 (3) | 0.65832 (12) | 0.0209 (4) | |
| H4 | 0.1380 | 1.1622 | 0.6711 | 0.025* | |
| C8 | 0.54094 (17) | 0.7152 (4) | 0.82950 (13) | 0.0283 (4) | |
| H8A | 0.5286 | 0.5568 | 0.8302 | 0.034* | |
| H8B | 0.6268 | 0.7428 | 0.8472 | 0.034* | |
| C9 | 0.48763 (17) | 0.8258 (3) | 0.89657 (12) | 0.0256 (4) | |
| H9 | 0.4971 | 0.9857 | 0.8914 | 0.031* | |
| C7 | 0.48158 (17) | 0.8048 (3) | 0.73302 (12) | 0.0230 (4) | |
| H7 | 0.4950 | 0.9648 | 0.7349 | 0.028* | |
| C3A | 0.15070 (16) | 0.8761 (3) | 0.74901 (11) | 0.0202 (4) | |
| C6A | 0.34211 (16) | 0.7655 (3) | 0.69886 (12) | 0.0197 (4) | |
| C9A | 0.35251 (18) | 0.7770 (3) | 0.87112 (13) | 0.0239 (4) | |
| C9B | 0.29098 (16) | 0.8644 (3) | 0.77341 (11) | 0.0191 (4) | |
| H9B | 0.3154 | 1.0198 | 0.7767 | 0.023* | |
| C10 | 0.16237 (19) | 1.0186 (5) | 0.99865 (14) | 0.0448 (7) | |
| C12 | 0.1441 (3) | 1.0759 (8) | 1.13703 (17) | 0.0705 (12) | |
| H12 | 0.1433 | 1.0539 | 1.1967 | 0.085* | |
| C11 | 0.1675 (3) | 0.9226 (8) | 1.0830 (2) | 0.0778 (12) | |
| H11 | 0.1846 | 0.7751 | 1.0985 | 0.093* | |
| C13 | 0.1359 (3) | 1.2334 (7) | 1.00599 (18) | 0.0751 (12) | |
| H13 | 0.1281 | 1.3414 | 0.9615 | 0.090* | |
| C16 | −0.03024 (17) | 1.0299 (3) | 0.62641 (12) | 0.0252 (4) | |
| C18 | 0.54524 (17) | 0.7069 (4) | 0.66942 (13) | 0.0261 (4) | |
| C14 | 0.08432 (17) | 0.6535 (3) | 0.73785 (13) | 0.0257 (4) | |
| H14A | 0.1270 | 0.5548 | 0.7856 | 0.039* | |
| H14B | 0.0801 | 0.5906 | 0.6796 | 0.039* | |
| H14C | 0.0045 | 0.6763 | 0.7414 | 0.039* | |
| C15 | 0.31545 (17) | 0.5190 (3) | 0.67784 (13) | 0.0259 (4) | |
| H15A | 0.2316 | 0.5000 | 0.6460 | 0.039* | |
| H15B | 0.3359 | 0.4370 | 0.7339 | 0.039* | |
| H15C | 0.3623 | 0.4661 | 0.6405 | 0.039* | |
| C19 | 0.6056 (3) | 0.7648 (5) | 0.53744 (18) | 0.0490 (7) | |
| H19A | 0.6898 | 0.7427 | 0.5672 | 0.073* | |
| H19B | 0.5951 | 0.8701 | 0.4890 | 0.073* | |
| H19C | 0.5692 | 0.6270 | 0.5128 | 0.073* | |
| C17 | −0.1957 (2) | 1.2172 (6) | 0.65095 (18) | 0.0505 (7) | |
| H17A | −0.2322 | 1.2419 | 0.5868 | 0.076* | |
| H17B | −0.2122 | 1.3404 | 0.6846 | 0.076* | |
| H17C | −0.2279 | 1.0848 | 0.6688 | 0.076* | |
| O1 | 0.31411 (11) | 0.9003 (3) | 0.93685 (8) | 0.0273 (3) | |
| O3 | 0.32773 (13) | 0.5526 (2) | 0.87711 (9) | 0.0286 (3) | |
| H3 | 0.3709 | 0.5030 | 0.9256 | 0.043* | |
| O5 | −0.09773 (12) | 0.9134 (3) | 0.57030 (10) | 0.0352 (4) | |
| O6 | −0.06776 (13) | 1.1939 (3) | 0.66985 (10) | 0.0349 (4) | |
| O2 | 0.54549 (13) | 0.7663 (3) | 0.98856 (9) | 0.0311 (3) | |
| H2A | 0.5935 | 0.6663 | 0.9902 | 0.047* | |
| O7 | 0.58818 (15) | 0.5249 (3) | 0.67619 (11) | 0.0429 (4) | |
| O8 | 0.54884 (15) | 0.8474 (3) | 0.60324 (11) | 0.0383 (4) | |
| O4 | 0.1223 (2) | 1.2643 (7) | 1.09199 (17) | 0.1192 (16) |
| C2 | 0.0193 (9) | 0.0538 (13) | 0.0210 (9) | −0.0075 (10) | 0.0087 (7) | −0.0039 (9) |
| C5 | 0.0235 (9) | 0.0264 (9) | 0.0172 (8) | −0.0001 (8) | 0.0053 (7) | 0.0016 (7) |
| C3 | 0.0159 (9) | 0.0401 (11) | 0.0237 (9) | −0.0026 (8) | 0.0078 (7) | −0.0048 (9) |
| C6 | 0.0233 (9) | 0.0242 (9) | 0.0195 (8) | −0.0030 (8) | 0.0093 (7) | −0.0008 (7) |
| C4 | 0.0202 (9) | 0.0206 (9) | 0.0226 (9) | −0.0014 (7) | 0.0074 (7) | −0.0020 (7) |
| C8 | 0.0190 (9) | 0.0402 (12) | 0.0239 (9) | 0.0031 (8) | 0.0037 (8) | −0.0023 (8) |
| C9 | 0.0222 (10) | 0.0362 (11) | 0.0178 (8) | −0.0017 (8) | 0.0051 (7) | −0.0020 (8) |
| C7 | 0.0198 (9) | 0.0281 (10) | 0.0215 (9) | −0.0020 (8) | 0.0067 (7) | −0.0046 (7) |
| C3A | 0.0161 (9) | 0.0257 (9) | 0.0185 (8) | −0.0028 (7) | 0.0050 (7) | −0.0016 (7) |
| C6A | 0.0174 (9) | 0.0236 (9) | 0.0180 (8) | −0.0013 (7) | 0.0054 (7) | −0.0011 (7) |
| C9A | 0.0222 (10) | 0.0311 (10) | 0.0199 (8) | −0.0026 (8) | 0.0084 (7) | 0.0001 (8) |
| C9B | 0.0174 (9) | 0.0207 (9) | 0.0190 (8) | −0.0034 (7) | 0.0053 (7) | −0.0003 (7) |
| C10 | 0.0168 (10) | 0.098 (2) | 0.0218 (10) | −0.0058 (12) | 0.0089 (8) | −0.0109 (12) |
| C12 | 0.0373 (15) | 0.160 (4) | 0.0190 (11) | 0.0052 (19) | 0.0150 (10) | −0.0089 (18) |
| C11 | 0.082 (2) | 0.126 (3) | 0.0380 (15) | −0.036 (2) | 0.0370 (15) | −0.0145 (18) |
| C13 | 0.072 (2) | 0.120 (3) | 0.0285 (13) | 0.050 (2) | 0.0076 (13) | −0.0206 (16) |
| C16 | 0.0219 (9) | 0.0290 (10) | 0.0249 (9) | 0.0025 (8) | 0.0075 (8) | 0.0039 (8) |
| C18 | 0.0175 (9) | 0.0341 (11) | 0.0254 (9) | 0.0010 (8) | 0.0048 (7) | −0.0053 (8) |
| C14 | 0.0209 (9) | 0.0306 (10) | 0.0243 (9) | −0.0062 (8) | 0.0048 (7) | 0.0024 (8) |
| C15 | 0.0252 (10) | 0.0257 (10) | 0.0254 (9) | 0.0003 (8) | 0.0060 (8) | −0.0028 (8) |
| C19 | 0.0518 (16) | 0.0625 (17) | 0.0461 (13) | 0.0102 (13) | 0.0350 (12) | 0.0024 (13) |
| C17 | 0.0283 (11) | 0.0711 (18) | 0.0494 (14) | 0.0197 (12) | 0.0077 (11) | −0.0069 (13) |
| O1 | 0.0180 (7) | 0.0454 (8) | 0.0191 (6) | −0.0045 (6) | 0.0066 (5) | −0.0041 (6) |
| O3 | 0.0278 (7) | 0.0308 (7) | 0.0235 (6) | −0.0033 (6) | 0.0022 (5) | 0.0080 (6) |
| O5 | 0.0237 (7) | 0.0461 (9) | 0.0313 (7) | −0.0011 (7) | 0.0015 (6) | −0.0102 (7) |
| O6 | 0.0259 (7) | 0.0379 (8) | 0.0393 (8) | 0.0089 (7) | 0.0074 (6) | −0.0058 (7) |
| O2 | 0.0292 (8) | 0.0361 (8) | 0.0244 (7) | 0.0024 (6) | 0.0027 (6) | −0.0009 (6) |
| O7 | 0.0443 (9) | 0.0492 (10) | 0.0389 (8) | 0.0204 (8) | 0.0181 (7) | 0.0006 (8) |
| O8 | 0.0409 (9) | 0.0458 (10) | 0.0395 (8) | 0.0042 (7) | 0.0290 (7) | 0.0025 (7) |
| O4 | 0.0566 (14) | 0.244 (5) | 0.0456 (13) | 0.063 (2) | −0.0011 (11) | −0.063 (2) |
| C2—O1 | 1.447 (2) | C9A—O1 | 1.433 (2) |
| C2—C10 | 1.499 (3) | C9A—C9B | 1.548 (2) |
| C2—C3 | 1.515 (3) | C9B—H9B | 0.9800 |
| C2—H2 | 0.9800 | C10—C13 | 1.349 (5) |
| C5—C6 | 1.527 (3) | C10—C11 | 1.405 (4) |
| C5—C4 | 1.535 (2) | C12—O4 | 1.318 (6) |
| C5—H5A | 0.9700 | C12—C11 | 1.328 (5) |
| C5—H5B | 0.9700 | C12—H12 | 0.9300 |
| C3—C3A | 1.548 (3) | C11—H11 | 0.9300 |
| C3—H3A | 0.9700 | C13—O4 | 1.391 (3) |
| C3—H3B | 0.9700 | C13—H13 | 0.9300 |
| C6—C6A | 1.540 (2) | C16—O5 | 1.204 (2) |
| C6—H6A | 0.9700 | C16—O6 | 1.342 (3) |
| C6—H6B | 0.9700 | C18—O7 | 1.202 (3) |
| C4—C16 | 1.514 (2) | C18—O8 | 1.336 (3) |
| C4—C3A | 1.567 (2) | C14—H14A | 0.9600 |
| C4—H4 | 0.9800 | C14—H14B | 0.9600 |
| C8—C9 | 1.513 (3) | C14—H14C | 0.9600 |
| C8—C7 | 1.533 (3) | C15—H15A | 0.9600 |
| C8—H8A | 0.9700 | C15—H15B | 0.9600 |
| C8—H8B | 0.9700 | C15—H15C | 0.9600 |
| C9—O2 | 1.416 (2) | C19—O8 | 1.456 (3) |
| C9—C9A | 1.535 (3) | C19—H19A | 0.9600 |
| C9—H9 | 0.9800 | C19—H19B | 0.9600 |
| C7—C18 | 1.517 (3) | C19—H19C | 0.9600 |
| C7—C6A | 1.571 (2) | C17—O6 | 1.440 (3) |
| C7—H7 | 0.9800 | C17—H17A | 0.9600 |
| C3A—C14 | 1.538 (3) | C17—H17B | 0.9600 |
| C3A—C9B | 1.568 (2) | C17—H17C | 0.9600 |
| C6A—C15 | 1.538 (3) | O3—H3 | 0.8200 |
| C6A—C9B | 1.563 (2) | O2—H2A | 0.8200 |
| C9A—O3 | 1.398 (2) | ||
| O1—C2—C10 | 106.57 (15) | O3—C9A—O1 | 110.13 (15) |
| O1—C2—C3 | 109.20 (15) | O3—C9A—C9 | 112.80 (17) |
| C10—C2—C3 | 114.2 (2) | O1—C9A—C9 | 103.77 (15) |
| O1—C2—H2 | 108.9 | O3—C9A—C9B | 110.57 (15) |
| C10—C2—H2 | 108.9 | O1—C9A—C9B | 110.73 (15) |
| C3—C2—H2 | 108.9 | C9—C9A—C9B | 108.67 (15) |
| C6—C5—C4 | 111.12 (14) | C9A—C9B—C6A | 114.36 (15) |
| C6—C5—H5A | 109.4 | C9A—C9B—C3A | 113.02 (14) |
| C4—C5—H5A | 109.4 | C6A—C9B—C3A | 116.49 (14) |
| C6—C5—H5B | 109.4 | C9A—C9B—H9B | 103.6 |
| C4—C5—H5B | 109.4 | C6A—C9B—H9B | 103.6 |
| H5A—C5—H5B | 108.0 | C3A—C9B—H9B | 103.6 |
| C2—C3—C3A | 111.77 (17) | C13—C10—C11 | 105.5 (3) |
| C2—C3—H3A | 109.3 | C13—C10—C2 | 128.8 (3) |
| C3A—C3—H3A | 109.3 | C11—C10—C2 | 125.6 (3) |
| C2—C3—H3B | 109.3 | O4—C12—C11 | 108.6 (3) |
| C3A—C3—H3B | 109.3 | O4—C12—H12 | 125.7 |
| H3A—C3—H3B | 107.9 | C11—C12—H12 | 125.7 |
| C5—C6—C6A | 114.07 (15) | C12—C11—C10 | 109.2 (4) |
| C5—C6—H6A | 108.7 | C12—C11—H11 | 125.4 |
| C6A—C6—H6A | 108.7 | C10—C11—H11 | 125.4 |
| C5—C6—H6B | 108.7 | C10—C13—O4 | 107.7 (3) |
| C6A—C6—H6B | 108.7 | C10—C13—H13 | 126.1 |
| H6A—C6—H6B | 107.6 | O4—C13—H13 | 126.1 |
| C16—C4—C5 | 110.25 (14) | O5—C16—O6 | 123.23 (18) |
| C16—C4—C3A | 111.23 (15) | O5—C16—C4 | 125.74 (18) |
| C5—C4—C3A | 112.15 (15) | O6—C16—C4 | 111.03 (16) |
| C16—C4—H4 | 107.7 | O7—C18—O8 | 122.7 (2) |
| C5—C4—H4 | 107.7 | O7—C18—C7 | 125.1 (2) |
| C3A—C4—H4 | 107.7 | O8—C18—C7 | 112.15 (17) |
| C9—C8—C7 | 110.12 (16) | C3A—C14—H14A | 109.5 |
| C9—C8—H8A | 109.6 | C3A—C14—H14B | 109.5 |
| C7—C8—H8A | 109.6 | H14A—C14—H14B | 109.5 |
| C9—C8—H8B | 109.6 | C3A—C14—H14C | 109.5 |
| C7—C8—H8B | 109.6 | H14A—C14—H14C | 109.5 |
| H8A—C8—H8B | 108.2 | H14B—C14—H14C | 109.5 |
| O2—C9—C8 | 113.43 (16) | C6A—C15—H15A | 109.5 |
| O2—C9—C9A | 110.34 (15) | C6A—C15—H15B | 109.5 |
| C8—C9—C9A | 110.20 (15) | H15A—C15—H15B | 109.5 |
| O2—C9—H9 | 107.5 | C6A—C15—H15C | 109.5 |
| C8—C9—H9 | 107.5 | H15A—C15—H15C | 109.5 |
| C9A—C9—H9 | 107.5 | H15B—C15—H15C | 109.5 |
| C18—C7—C8 | 108.61 (16) | O8—C19—H19A | 109.5 |
| C18—C7—C6A | 112.77 (14) | O8—C19—H19B | 109.5 |
| C8—C7—C6A | 112.85 (15) | H19A—C19—H19B | 109.5 |
| C18—C7—H7 | 107.4 | O8—C19—H19C | 109.5 |
| C8—C7—H7 | 107.4 | H19A—C19—H19C | 109.5 |
| C6A—C7—H7 | 107.4 | H19B—C19—H19C | 109.5 |
| C14—C3A—C3 | 109.09 (16) | O6—C17—H17A | 109.5 |
| C14—C3A—C4 | 109.84 (14) | O6—C17—H17B | 109.5 |
| C3—C3A—C4 | 109.53 (15) | H17A—C17—H17B | 109.5 |
| C14—C3A—C9B | 116.24 (16) | O6—C17—H17C | 109.5 |
| C3—C3A—C9B | 105.55 (14) | H17A—C17—H17C | 109.5 |
| C4—C3A—C9B | 106.38 (14) | H17B—C17—H17C | 109.5 |
| C15—C6A—C6 | 109.81 (15) | C9A—O1—C2 | 113.84 (14) |
| C15—C6A—C9B | 115.31 (16) | C9A—O3—H3 | 109.5 |
| C6—C6A—C9B | 106.15 (14) | C16—O6—C17 | 116.61 (17) |
| C15—C6A—C7 | 109.91 (15) | C9—O2—H2A | 109.5 |
| C6—C6A—C7 | 108.86 (15) | C18—O8—C19 | 115.88 (19) |
| C9B—C6A—C7 | 106.57 (13) | C12—O4—C13 | 108.9 (3) |
| H··· | ||||
| O3—H3···O2i | 0.82 | 1.99 | 2.757 (2) | 155 |
| O2—H2A···O1i | 0.82 | 2.07 | 2.787 (2) | 146 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2i | 0.82 | 1.99 | 2.757 (2) | 155 |
| O2—H2 | 0.82 | 2.07 | 2.787 (2) | 146 |
Symmetry code: (i) .