Literature DB >> 21202984

Trimesic acid dimethyl sulfoxide solvate: space group revision.

Sylvain Bernès, Guadalupe Hernández, Roberto Portillo, René Gutiérrez.   

Abstract

The structure of the title solvate, C(9)H(6)O(6)·C(2)H(6)OS, was determined 30 years ago [Herbstein, Kapon & Wasserman (1978 ▶). Acta Cryst. B34, 1613-1617], with data collected at room temperature, and refined in the space group P2(1). The present redetermination, based on high-resolution diffraction data, shows that the actual space group is more likely to be P2(1)/m. The crystal structure contains layers of trimesic acid molecules lying on mirror planes. A mirror plane also passes through the S and O atoms of the solvent molecule. The molecules in each layer are inter-connected through strong O-H⋯O hydrogen bonds, forming a two-dimensional supra-molecular network within each layer. The donor groups are the hydroxyls of the trimesic acid mol-ecules, while the acceptors are the carbonyl or the sulfoxide O atoms.

Entities:  

Year:  2008        PMID: 21202984      PMCID: PMC2961820          DOI: 10.1107/S1600536808018655

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the first report on the title solvate structure, see: Herbstein et al. (1978 ▶). For the use of trimesic acid as a building block for supra­molecular networks, see: Almeida Paz & Klinowski (2004 ▶). For a description of hydrogen bonds, see: Desiraju & Steiner (1999 ▶).

Experimental

Crystal data

C9H6O6·C2H6OS M = 288.27 Monoclinic, a = 8.7444 (7) Å b = 6.8365 (7) Å c = 10.7113 (8) Å β = 96.195 (5)° V = 636.59 (10) Å3 Z = 2 Mo Kα radiation μ = 0.28 mm−1 T = 298 (1) K 0.60 × 0.48 × 0.36 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1996 ▶) T min = 0.851, T max = 0.904 4582 measured reflections 2007 independent reflections 1772 reflections with I > 2σ(I) R int = 0.015 3 standard reflections every 97 reflections intensity decay: <1%

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.112 S = 1.07 2007 reflections 123 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.30 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808018655/fb2098sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018655/fb2098Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H6O6·C2H6OSF000 = 300
Mr = 288.27Dx = 1.504 Mg m3
Monoclinic, P21/mMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 45 reflections
a = 8.7444 (7) Åθ = 4.7–13.8º
b = 6.8365 (7) ŵ = 0.28 mm1
c = 10.7113 (8) ÅT = 298 (1) K
β = 96.195 (5)ºCell measurement pressure: 101(2) kPa
V = 636.59 (10) Å3Prism, colourless
Z = 20.60 × 0.48 × 0.36 mm
Siemens P4 diffractometer1772 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.015
Monochromator: graphiteθmax = 30.0º
T = 298(1) Kθmin = 1.9º
P = 101(2) kPah = −12→12
2θ/ω scansk = −9→1
Absorption correction: ψ scan(XSCANS; Siemens, 1996)l = −15→15
Tmin = 0.851, Tmax = 0.9043 standard reflections
4582 measured reflections every 97 reflections
2007 independent reflections intensity decay: <1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.112  w = 1/[σ2(Fo2) + (0.0632P)2 + 0.1017P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2007 reflectionsΔρmax = 0.38 e Å3
123 parametersΔρmin = −0.30 e Å3
20 constraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.040 (9)
xyzUiso*/Ueq
C10.60335 (14)0.25000.50040 (13)0.0315 (3)
C20.65053 (16)0.25000.38033 (13)0.0356 (3)
H2A0.57730.25000.31060.043*
C30.80576 (16)0.25000.36384 (12)0.0355 (3)
C40.91692 (16)0.25000.46759 (13)0.0361 (3)
H4A1.02100.25000.45670.043*
C50.86956 (15)0.25000.58847 (12)0.0333 (3)
C60.71358 (15)0.25000.60405 (13)0.0325 (3)
H6A0.68290.25000.68450.039*
C70.43539 (16)0.25000.51484 (15)0.0363 (3)
C80.84857 (18)0.25000.23234 (14)0.0428 (4)
C90.98606 (16)0.25000.70011 (13)0.0382 (4)
O10.40892 (13)0.25000.63458 (12)0.0512 (4)
H10.314 (4)0.25000.640 (3)0.079 (9)*
O20.33561 (13)0.25000.42797 (12)0.0527 (4)
O30.99843 (14)0.25000.22789 (12)0.0648 (5)
H31.018 (4)0.25000.152 (4)0.105 (12)*
O40.75495 (16)0.25000.14056 (11)0.0610 (4)
O50.92574 (13)0.25000.80719 (10)0.0548 (4)
H50.998 (3)0.25000.868 (3)0.063 (7)*
O61.12357 (13)0.25000.69470 (12)0.0600 (4)
S10.28919 (4)0.25000.01135 (3)0.04770 (18)
C100.35278 (17)0.0539 (3)0.11302 (15)0.0600 (4)
H10A0.46320.05220.12490.090*
H10B0.3158−0.06770.07640.090*
H10C0.31370.07130.19270.090*
O70.11484 (13)0.25000.00856 (11)0.0620 (5)
U11U22U33U12U13U23
C10.0208 (5)0.0452 (7)0.0285 (6)0.0000.0028 (4)0.000
C20.0258 (6)0.0547 (9)0.0257 (6)0.0000.0002 (5)0.000
C30.0276 (6)0.0578 (9)0.0212 (6)0.0000.0037 (4)0.000
C40.0239 (6)0.0595 (9)0.0251 (6)0.0000.0043 (5)0.000
C50.0229 (5)0.0545 (8)0.0226 (5)0.0000.0023 (4)0.000
C60.0236 (6)0.0498 (8)0.0246 (6)0.0000.0045 (4)0.000
C70.0227 (6)0.0491 (8)0.0371 (7)0.0000.0032 (5)0.000
C80.0327 (7)0.0727 (11)0.0236 (6)0.0000.0052 (5)0.000
C90.0233 (6)0.0678 (10)0.0234 (6)0.0000.0025 (4)0.000
O10.0227 (5)0.0914 (10)0.0407 (6)0.0000.0092 (4)0.000
O20.0261 (5)0.0874 (10)0.0433 (7)0.000−0.0024 (4)0.000
O30.0320 (6)0.1391 (16)0.0244 (5)0.0000.0083 (4)0.000
O40.0401 (6)0.1171 (13)0.0247 (5)0.000−0.0012 (4)0.000
O50.0266 (5)0.1159 (12)0.0218 (5)0.0000.0026 (4)0.000
O60.0216 (5)0.1258 (13)0.0330 (6)0.0000.0042 (4)0.000
S10.0287 (2)0.0895 (4)0.0254 (2)0.0000.00491 (13)0.000
C100.0550 (8)0.0642 (9)0.0587 (8)−0.0010 (7)−0.0031 (6)−0.0050 (7)
O70.0275 (5)0.1342 (15)0.0238 (5)0.0000.0010 (4)0.000
C1—C61.3895 (18)C8—O41.2095 (19)
C1—C21.3925 (19)C8—O31.3165 (19)
C1—C71.4933 (18)C9—O61.2101 (17)
C2—C31.3876 (19)C9—O51.3131 (17)
C2—H2A0.9300O1—H10.84 (3)
C3—C41.3952 (19)O3—H30.85 (4)
C3—C81.496 (2)O5—H50.86 (3)
C4—C51.4014 (18)S1—O71.5217 (12)
C4—H4A0.9300S1—C10i1.7781 (17)
C5—C61.3918 (18)S1—C101.7781 (17)
C5—C91.4849 (19)C10—H10A0.9600
C6—H6A0.9300C10—H10B0.9600
C7—O21.2049 (19)C10—H10C0.9600
C7—O11.3277 (19)
C6—C1—C2119.26 (12)O1—C7—C1112.08 (12)
C6—C1—C7121.50 (12)O4—C8—O3124.03 (14)
C2—C1—C7119.24 (12)O4—C8—C3123.31 (15)
C3—C2—C1120.60 (12)O3—C8—C3112.66 (13)
C3—C2—H2A119.7O6—C9—O5122.46 (13)
C1—C2—H2A119.7O6—C9—C5124.08 (13)
C2—C3—C4120.37 (12)O5—C9—C5113.46 (12)
C2—C3—C8117.87 (12)C7—O1—H1110 (2)
C4—C3—C8121.76 (13)C8—O3—H3110 (2)
C3—C4—C5119.08 (12)C9—O5—H5109.3 (19)
C3—C4—H4A120.5O7—S1—C10i104.98 (6)
C5—C4—H4A120.5O7—S1—C10104.98 (6)
C6—C5—C4120.13 (12)C10i—S1—C1097.87 (11)
C6—C5—C9119.97 (12)S1—C10—H10A109.5
C4—C5—C9119.91 (12)S1—C10—H10B109.5
C1—C6—C5120.56 (12)H10A—C10—H10B109.5
C1—C6—H6A119.7S1—C10—H10C109.5
C5—C6—H6A119.7H10A—C10—H10C109.5
O2—C7—O1123.97 (14)H10B—C10—H10C109.5
O2—C7—C1123.94 (14)
C6—C1—C2—C30.0C6—C1—C7—O2180.0
C7—C1—C2—C3180.0C2—C1—C7—O20.0
C1—C2—C3—C40.0C6—C1—C7—O10.0
C1—C2—C3—C8180.0C2—C1—C7—O1180.0
C2—C3—C4—C50.0C2—C3—C8—O40.0
C8—C3—C4—C5180.0C4—C3—C8—O4180.0
C3—C4—C5—C60.0C2—C3—C8—O3180.0
C3—C4—C5—C9180.0C4—C3—C8—O30.0
C2—C1—C6—C50.0C6—C5—C9—O6180.0
C7—C1—C6—C5180.0C4—C5—C9—O60.0
C4—C5—C6—C10.0C6—C5—C9—O50.0
C9—C5—C6—C1180.0C4—C5—C9—O5180.0
D—H···AD—HH···AD···AD—H···A
O1—H1···O6ii0.84 (3)1.82 (3)2.6435 (16)165 (3)
O3—H3···O7iii0.85 (4)1.83 (4)2.6593 (17)164 (4)
O5—H5···O7iv0.86 (3)1.73 (3)2.5723 (16)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O6i0.84 (3)1.82 (3)2.6435 (16)165 (3)
O3—H3⋯O7ii0.85 (4)1.83 (4)2.6593 (17)164 (4)
O5—H5⋯O7iii0.86 (3)1.73 (3)2.5723 (16)169 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  Two- and three-dimensional cadmium-organic frameworks with trimesic acid and 4,4'-trimethylenedipyridine.

Authors:  Filipe A Almeida Paz; Jacek Klinowski
Journal:  Inorg Chem       Date:  2004-06-28       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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