Literature DB >> 21202968

Di-4-pyridylmethane-diol.

Warren R Knapp1, Robert L Laduca.   

Abstract

In the title compound, C(11)H(10)N(2)O(2), individual mol-ecules lie across crystallographic twofold rotation axes. Neighboring mol-ecules engage in O-H⋯N hydrogen bonding, forming square-grid layers parallel to the ab plane.

Entities:  

Year:  2008        PMID: 21202968      PMCID: PMC2961832          DOI: 10.1107/S1600536808018588

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Chen & Mak (2005 ▶); Montney et al. (2008 ▶); Zaworotko (2007 ▶).

Experimental

Crystal data

C11H10N2O2 M = 202.21 Tetragonal, a = 7.6130 (2) Å c = 17.5864 (11) Å V = 1019.27 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 173 (2) K 0.30 × 0.22 × 0.16 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.686, T max = 0.745 (expected range = 0.907–0.985) 14287 measured reflections 605 independent reflections 549 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.076 S = 1.13 605 reflections 72 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶) and COSMO (Bruker, 2006 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Crystal Maker (Palmer, 2007 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808018588/hg2417sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018588/hg2417Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N2O2Z = 4
Mr = 202.21F000 = 424
Tetragonal, P43212Dx = 1.318 Mg m3
Hall symbol: P 4nw 2abwMo Kα radiation λ = 0.71073 Å
a = 7.6130 (2) ÅCell parameters from 14287 reflections
b = 7.6130 (2) Åθ = 2.9–25.3º
c = 17.5864 (11) ŵ = 0.09 mm1
α = 90ºT = 173 (2) K
β = 90ºBlock, colourless
γ = 90º0.30 × 0.22 × 0.16 mm
V = 1019.27 (7) Å3
Bruker APEXII diffractometer605 independent reflections
Radiation source: fine-focus sealed tube549 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.040
T = 173(2) Kθmax = 25.3º
ω and ψ scansθmin = 2.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→9
Tmin = 0.686, Tmax = 0.745k = −9→9
14287 measured reflectionsl = −21→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.076  w = 1/[σ2(Fo2) + (0.0412P)2 + 0.1593P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
605 reflectionsΔρmax = 0.13 e Å3
72 parametersΔρmin = −0.12 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.62268 (16)0.65611 (15)0.06536 (7)0.0256 (3)
H1A0.616 (3)0.768 (3)0.0580 (11)0.031*
N10.6238 (2)0.01378 (19)0.04930 (8)0.0317 (4)
C10.5269 (3)0.1201 (3)0.09305 (11)0.0377 (5)
H10.46810.07170.13440.045*
C20.5099 (3)0.2974 (2)0.07980 (10)0.0322 (5)
H20.44220.36650.11210.039*
C30.5945 (2)0.3724 (2)0.01785 (9)0.0216 (4)
C40.6967 (2)0.2639 (2)−0.02701 (10)0.0263 (4)
H40.75730.3089−0.06860.032*
C50.7075 (2)0.0872 (2)−0.00905 (11)0.0307 (5)
H50.77720.0157−0.03950.037*
C60.5671 (2)0.5671 (2)0.00000.0207 (5)
U11U22U33U12U13U23
O10.0303 (7)0.0177 (6)0.0287 (7)−0.0006 (5)−0.0056 (6)−0.0012 (5)
N10.0390 (10)0.0217 (8)0.0343 (8)0.0022 (7)−0.0040 (8)0.0004 (7)
C10.0455 (13)0.0300 (11)0.0377 (10)0.0023 (10)0.0098 (9)0.0074 (9)
C20.0352 (11)0.0266 (10)0.0349 (10)0.0056 (8)0.0095 (9)0.0023 (8)
C30.0196 (9)0.0221 (9)0.0232 (8)−0.0007 (7)−0.0047 (7)−0.0016 (7)
C40.0267 (10)0.0256 (10)0.0264 (9)0.0007 (8)0.0018 (8)−0.0017 (8)
C50.0342 (10)0.0254 (10)0.0325 (10)0.0059 (8)−0.0021 (9)−0.0057 (9)
C60.0208 (8)0.0208 (8)0.0205 (11)0.0008 (10)0.0002 (7)−0.0002 (7)
O1—C61.3998 (17)C3—C41.382 (2)
O1—H1A0.87 (2)C3—C61.529 (2)
N1—C51.331 (2)C4—C51.384 (2)
N1—C11.338 (2)C4—H40.9300
C1—C21.376 (3)C5—H50.9300
C1—H10.9300C6—O1i1.3998 (17)
C2—C31.389 (2)C6—C3i1.529 (2)
C2—H20.9300
C6—O1—H1A109.7 (13)C3—C4—H4120.5
C5—N1—C1116.94 (15)C5—C4—H4120.5
N1—C1—C2123.20 (17)N1—C5—C4123.77 (17)
N1—C1—H1118.4N1—C5—H5118.1
C2—C1—H1118.4C4—C5—H5118.1
C1—C2—C3119.53 (17)O1—C6—O1i112.43 (19)
C1—C2—H2120.2O1—C6—C3105.03 (8)
C3—C2—H2120.2O1i—C6—C3113.29 (8)
C4—C3—C2117.59 (16)O1—C6—C3i113.30 (8)
C4—C3—C6122.61 (14)O1i—C6—C3i105.03 (8)
C2—C3—C6119.76 (14)C3—C6—C3i107.87 (19)
C3—C4—C5118.94 (17)
C5—N1—C1—C20.6 (3)C3—C4—C5—N10.3 (3)
N1—C1—C2—C30.8 (3)C4—C3—C6—O1−123.43 (16)
C1—C2—C3—C4−1.6 (3)C2—C3—C6—O158.9 (2)
C1—C2—C3—C6176.25 (17)C4—C3—C6—O1i−0.4 (2)
C2—C3—C4—C51.0 (3)C2—C3—C6—O1i−178.06 (15)
C6—C3—C4—C5−176.72 (15)C4—C3—C6—C3i115.45 (17)
C1—N1—C5—C4−1.1 (3)C2—C3—C6—C3i−62.25 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N1ii0.87 (2)1.87 (2)2.7376 (19)173.4 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N1i0.87 (2)1.87 (2)2.7376 (19)173.4 (19)

Symmetry code: (i) .

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