Literature DB >> 21202967

Cytenamide-1,4-dioxane (2/1).

Andrea Johnston, Alastair J Florence, Francesca J A Fabbiani, Kenneth Shankland, Colin T Bedford.   

Abstract

IN THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 5H-dibenzo[a,d]cyclo-hepta-triene-5-carboxamide-1,4-dioxane (2/1)], 2C(16)H(13)NO·C(4)H(8)O(2), the cytenamide mol-ecules form a hydrogen-bonded R(2) (2)(8) dimer. The solvent mol-ecule is located between two adjacent cytenamide dimers and forms N-H⋯O hydrogen bonds with one cytenamide mol-ecule from each dimer.

Entities:  

Year:  2008        PMID: 21202967      PMCID: PMC2961860          DOI: 10.1107/S1600536808018709

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details on experimental methods used to obtain this form, see: Davis et al. (1964 ▶); Florence et al. (2003 ▶); Florence, Johnston, Fernandes et al. (2006 ▶). For related literature on cytenamide, see: Florence, Bedford et al. (2008 ▶). For literature on related mol­ecules, see: Cyr et al. (1987 ▶); Fleischman et al. (2003 ▶); Florence, Johnston, Price et al. (2006 ▶); Florence, Leech et al. (2006 ▶); Bandoli et al. (1992 ▶); Harrison et al. (2006 ▶); Leech et al. (2007 ▶); Florence, Shankland et al. (2008 ▶). For other related literature, see: Etter (1990 ▶).

Experimental

Crystal data

2C16H13NO·C4H8O2 M = 558.68 Monoclinic, a = 24.0888 (7) Å b = 5.6066 (2) Å c = 21.1050 (6) Å β = 90.313 (3)° V = 2850.32 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 160 K 0.48 × 0.09 × 0.03 mm

Data collection

Oxford Diffraction Gemini S diffractometer Absorption correction: multi-scan (ABSPACK; Oxford Diffraction, 2007 ▶) T min = 0.84, T max = 1.00 (expected range = 0.838–0.997) 23004 measured reflections 5125 independent reflections 3677 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.121 S = 1.08 5125 reflections 380 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED and SORTAV (Blessing, 1997 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808018709/tk2275sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018709/tk2275Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C16H13NO·C4H8O2F000 = 1184
Mr = 558.68Dx = 1.302 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4484 reflections
a = 24.0888 (7) Åθ = 3–27º
b = 5.6066 (2) ŵ = 0.09 mm1
c = 21.1050 (6) ÅT = 160 K
β = 90.313 (3)ºPlate, colourless
V = 2850.32 (15) Å30.48 × 0.09 × 0.03 mm
Z = 4
Area diffractometer5125 independent reflections
Monochromator: graphite3677 reflections with I > 2σ(I)
Detector resolution: 15.9745 pixels mm-1Rint = 0.057
T = 160 Kθmax = 25.2º
ω scansθmin = 2.6º
Absorption correction: multi-scan(ABSPACK; Oxford Diffraction, 2007)h = −28→28
Tmin = 0.84, Tmax = 1.00k = 0→6
23004 measured reflectionsl = 0→25
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.068  Method = Modified Sheldrick w = 1/[σ2(F2) + (0.03P)2 + 2.31P], where P = [max(Fo2,0) + 2Fc2]/3
wR(F2) = 0.121(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.47 e Å3
5125 reflectionsΔρmin = −0.42 e Å3
380 parametersExtinction correction: None
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
C10.30658 (11)0.7244 (5)0.22235 (12)0.0230
C20.34609 (11)0.5089 (5)0.22501 (12)0.0212
C30.38005 (11)0.4805 (5)0.16566 (12)0.0223
C40.36884 (12)0.2923 (5)0.12509 (12)0.0258
C50.39561 (13)0.2692 (6)0.06774 (13)0.0325
C60.43397 (12)0.4386 (6)0.04947 (14)0.0345
C70.44599 (12)0.6265 (6)0.08979 (13)0.0319
C80.42064 (11)0.6495 (5)0.14882 (12)0.0236
C90.43795 (11)0.8470 (5)0.18941 (13)0.0273
C100.43627 (11)0.8646 (5)0.25275 (13)0.0278
C110.41740 (11)0.6923 (5)0.29951 (12)0.0248
C120.43986 (12)0.7061 (6)0.36058 (13)0.0312
C130.42709 (13)0.5401 (6)0.40640 (14)0.0363
C140.39126 (14)0.3563 (6)0.39233 (13)0.0362
C150.36716 (12)0.3447 (5)0.33299 (13)0.0291
C160.37863 (11)0.5125 (5)0.28643 (12)0.0225
C170.19387 (11)0.2237 (5)0.72423 (12)0.0211
C180.15359 (11)0.0105 (5)0.72796 (11)0.0217
C190.11962 (11)0.0120 (5)0.78837 (12)0.0227
C200.13026 (12)−0.1573 (5)0.83494 (12)0.0281
C210.10561 (13)−0.1443 (6)0.89365 (13)0.0342
C220.07002 (13)0.0420 (6)0.90707 (14)0.0361
C230.05789 (12)0.2069 (6)0.86079 (13)0.0305
C240.08117 (11)0.1940 (5)0.80018 (12)0.0241
C250.06348 (11)0.3688 (5)0.75313 (13)0.0270
C260.06267 (11)0.3504 (5)0.68996 (13)0.0277
C270.08061 (11)0.1544 (5)0.64959 (12)0.0235
C280.05571 (11)0.1337 (6)0.58956 (13)0.0301
C290.06815 (12)−0.0532 (6)0.54957 (13)0.0341
C300.10567 (12)−0.2249 (6)0.56844 (13)0.0300
C310.13153 (12)−0.2035 (5)0.62664 (12)0.0262
C320.12027 (11)−0.0156 (5)0.66747 (12)0.0221
C330.24356 (17)1.1206 (7)0.52906 (16)0.0547
C340.20870 (16)1.1411 (8)0.47152 (17)0.0612
C350.26150 (18)0.8437 (9)0.42284 (16)0.0654
C360.29643 (16)0.8250 (8)0.47959 (16)0.0576
O20.20878 (8)0.3034 (4)0.67272 (9)0.0319
O10.29456 (9)0.8317 (4)0.27135 (9)0.0416
N10.28447 (10)0.7810 (4)0.16701 (10)0.0276
O40.26727 (11)0.8892 (5)0.53470 (11)0.0601
N20.21372 (10)0.3049 (4)0.77846 (10)0.0301
O30.23813 (13)1.0729 (6)0.41616 (11)0.0766
H120.29290.70050.13310.0337*
H130.23880.41670.77780.0346*
H140.20140.24920.81430.0341*
H110.26040.89280.16580.0335*
H210.32200.36800.22720.0227*
H410.34220.17720.13710.0304*
H510.38770.13580.04180.0373*
H610.45160.42560.01000.0391*
H710.47240.74210.07740.0366*
H910.45210.97690.16690.0320*
H1010.44951.00700.26950.0308*
H1210.46460.83120.37040.0366*
H1310.44200.55530.44660.0428*
H1410.38330.24080.42290.0431*
H1510.34300.22070.32350.0324*
H1810.1771−0.12950.73040.0252*
H2010.1550−0.28180.82560.0321*
H2110.1138−0.26130.92440.0401*
H2210.05400.05800.94780.0424*
H2310.03300.33200.86990.0339*
H2510.04910.51420.77000.0313*
H2610.04730.47940.66830.0327*
H2810.03080.24940.57660.0346*
H2910.0505−0.06290.50880.0391*
H3010.1144−0.35360.54220.0347*
H3110.1579−0.31820.63930.0303*
H3310.27321.23960.52580.0635*
H3320.22021.15440.56570.0653*
H3410.19591.30560.46700.0711*
H3420.17751.03330.47570.0712*
H3510.28220.80020.38570.0752*
H3520.23100.72960.42680.0756*
H3610.32900.93320.47500.0676*
H3620.31000.66060.48510.0684*
U11U22U33U12U13U23
C10.0193 (15)0.0282 (17)0.0216 (15)−0.0031 (12)0.0011 (12)−0.0002 (13)
C20.0250 (16)0.0174 (14)0.0214 (14)−0.0029 (12)0.0021 (11)0.0015 (12)
C30.0228 (16)0.0243 (16)0.0199 (14)0.0055 (12)−0.0029 (11)0.0048 (12)
C40.0286 (17)0.0256 (16)0.0232 (15)0.0019 (13)−0.0001 (12)0.0003 (13)
C50.0371 (19)0.0352 (19)0.0250 (16)0.0071 (15)−0.0039 (13)−0.0070 (14)
C60.0273 (17)0.055 (2)0.0216 (15)0.0101 (16)0.0024 (12)−0.0003 (15)
C70.0238 (16)0.043 (2)0.0288 (16)−0.0002 (14)0.0043 (13)0.0074 (15)
C80.0194 (15)0.0283 (17)0.0232 (15)0.0031 (13)−0.0003 (11)0.0045 (13)
C90.0250 (16)0.0251 (17)0.0317 (17)−0.0027 (13)0.0000 (12)0.0041 (14)
C100.0270 (16)0.0234 (17)0.0330 (17)−0.0035 (13)−0.0029 (13)−0.0060 (14)
C110.0219 (15)0.0273 (17)0.0251 (15)0.0055 (13)0.0005 (12)−0.0048 (13)
C120.0288 (17)0.0322 (18)0.0325 (17)0.0017 (14)−0.0046 (13)−0.0073 (15)
C130.0364 (19)0.048 (2)0.0246 (16)0.0080 (16)−0.0066 (13)−0.0019 (16)
C140.049 (2)0.039 (2)0.0212 (16)0.0063 (16)−0.0025 (14)0.0051 (14)
C150.0314 (17)0.0287 (18)0.0274 (16)−0.0003 (14)0.0018 (12)−0.0007 (14)
C160.0264 (16)0.0234 (16)0.0178 (14)0.0052 (13)0.0015 (11)−0.0037 (12)
C170.0189 (15)0.0242 (16)0.0203 (15)0.0013 (12)−0.0009 (11)−0.0041 (13)
C180.0228 (15)0.0232 (16)0.0190 (14)0.0038 (12)−0.0011 (11)0.0007 (12)
C190.0216 (15)0.0259 (16)0.0207 (14)−0.0044 (12)−0.0013 (11)−0.0032 (13)
C200.0337 (17)0.0283 (17)0.0224 (15)0.0004 (14)−0.0002 (12)0.0015 (14)
C210.0423 (19)0.040 (2)0.0199 (15)−0.0100 (16)0.0002 (13)0.0071 (14)
C220.0344 (18)0.049 (2)0.0244 (16)−0.0085 (16)0.0078 (13)−0.0044 (16)
C230.0261 (17)0.0343 (18)0.0313 (17)−0.0009 (14)0.0046 (13)−0.0086 (15)
C240.0242 (16)0.0266 (16)0.0215 (15)−0.0038 (13)0.0022 (12)−0.0040 (13)
C250.0235 (16)0.0228 (16)0.0347 (17)−0.0001 (12)0.0048 (12)−0.0026 (14)
C260.0268 (16)0.0253 (17)0.0310 (17)0.0042 (13)−0.0026 (13)0.0048 (14)
C270.0221 (15)0.0254 (17)0.0231 (15)−0.0036 (13)0.0001 (11)0.0018 (13)
C280.0227 (16)0.0399 (19)0.0277 (16)−0.0010 (14)−0.0035 (12)0.0099 (15)
C290.0321 (18)0.049 (2)0.0207 (15)−0.0079 (16)−0.0020 (13)−0.0008 (15)
C300.0341 (18)0.0319 (18)0.0241 (15)−0.0064 (14)0.0025 (13)−0.0048 (13)
C310.0289 (17)0.0266 (16)0.0231 (15)−0.0003 (13)−0.0010 (12)0.0017 (13)
C320.0195 (15)0.0243 (16)0.0225 (15)−0.0037 (12)0.0033 (11)0.0039 (13)
C330.072 (3)0.060 (3)0.0321 (19)−0.001 (2)−0.0018 (18)−0.0009 (19)
C340.059 (3)0.075 (3)0.049 (2)−0.005 (2)−0.0066 (19)0.007 (2)
C350.069 (3)0.097 (4)0.031 (2)0.008 (3)−0.0032 (18)−0.009 (2)
C360.057 (3)0.070 (3)0.046 (2)−0.009 (2)0.0046 (18)0.002 (2)
O20.0365 (13)0.0357 (12)0.0235 (11)−0.0099 (10)0.0011 (9)0.0034 (10)
O10.0443 (14)0.0513 (15)0.0292 (12)0.0234 (12)−0.0061 (10)−0.0082 (11)
N10.0272 (14)0.0302 (14)0.0256 (13)0.0092 (11)−0.0009 (10)−0.0014 (11)
O40.0769 (19)0.073 (2)0.0303 (13)0.0053 (16)−0.0001 (12)0.0113 (13)
N20.0307 (14)0.0366 (15)0.0231 (13)−0.0155 (12)0.0048 (10)−0.0024 (11)
O30.088 (2)0.109 (3)0.0327 (15)0.010 (2)−0.0051 (14)0.0206 (16)
C1—C21.539 (4)C20—H2010.940
C1—O11.232 (3)C21—C221.382 (4)
C1—N11.320 (3)C21—H2110.944
C2—C31.508 (4)C22—C231.375 (4)
C2—C161.511 (4)C22—H2210.948
C2—H210.981C23—C241.401 (4)
C3—C41.385 (4)C23—H2310.944
C3—C81.408 (4)C24—C251.457 (4)
C4—C51.381 (4)C25—C261.337 (4)
C4—H410.946C25—H2510.955
C5—C61.382 (4)C26—C271.457 (4)
C5—H510.945C26—H2610.932
C6—C71.384 (4)C27—C281.404 (4)
C6—H610.940C27—C321.400 (4)
C7—C81.397 (4)C28—C291.379 (4)
C7—H710.946C28—H2810.924
C8—C91.460 (4)C29—C301.378 (4)
C9—C101.341 (4)C29—H2910.959
C9—H910.935C30—C311.379 (4)
C10—C111.456 (4)C30—H3010.934
C10—H1010.929C31—C321.389 (4)
C11—C121.397 (4)C31—H3110.942
C11—C161.400 (4)C33—C341.477 (5)
C12—C131.378 (4)C33—O41.423 (4)
C12—H1210.943C33—H3310.980
C13—C141.376 (4)C33—H3320.977
C13—H1310.924C34—O31.422 (4)
C14—C151.379 (4)C34—H3410.976
C14—H1410.934C34—H3420.969
C15—C161.389 (4)C35—C361.464 (5)
C15—H1510.928C35—O31.410 (5)
C17—C181.542 (4)C35—H3510.963
C17—O21.231 (3)C35—H3520.979
C17—N21.319 (3)C36—O41.409 (4)
C18—C191.519 (4)C36—H3610.997
C18—C321.511 (3)C36—H3620.984
C18—H1810.969N1—H120.871
C19—C201.389 (4)N1—H110.855
C19—C241.401 (4)N2—H130.870
C20—C211.379 (4)N2—H140.873
C2—C1—O1120.0 (2)C20—C21—H211119.5
C2—C1—N1117.9 (2)C22—C21—H211120.8
O1—C1—N1122.0 (3)C21—C22—C23119.5 (3)
C1—C2—C3113.0 (2)C21—C22—H221120.9
C1—C2—C16109.8 (2)C23—C22—H221119.6
C3—C2—C16115.6 (2)C22—C23—C24122.0 (3)
C1—C2—H21105.5C22—C23—H231119.2
C3—C2—H21106.1C24—C23—H231118.9
C16—C2—H21106.0C19—C24—C23117.9 (3)
C2—C3—C4119.3 (3)C19—C24—C25124.0 (2)
C2—C3—C8121.3 (2)C23—C24—C25118.0 (3)
C4—C3—C8119.3 (2)C24—C25—C26129.0 (3)
C3—C4—C5121.5 (3)C24—C25—H251115.1
C3—C4—H41119.0C26—C25—H251115.8
C5—C4—H41119.5C25—C26—C27129.7 (3)
C4—C5—C6119.8 (3)C25—C26—H261115.7
C4—C5—H51119.2C27—C26—H261114.6
C6—C5—H51121.0C26—C27—C28117.6 (3)
C5—C6—C7119.3 (3)C26—C27—C32124.0 (2)
C5—C6—H61120.0C28—C27—C32118.3 (3)
C7—C6—H61120.7C27—C28—C29121.5 (3)
C6—C7—C8121.9 (3)C27—C28—H281118.9
C6—C7—H71119.4C29—C28—H281119.7
C8—C7—H71118.8C28—C29—C30119.9 (3)
C3—C8—C7118.1 (3)C28—C29—H291119.7
C3—C8—C9124.0 (2)C30—C29—H291120.4
C7—C8—C9118.0 (3)C29—C30—C31119.3 (3)
C8—C9—C10129.1 (3)C29—C30—H301121.2
C8—C9—H91113.3C31—C30—H301119.6
C10—C9—H91117.6C30—C31—C32122.0 (3)
C9—C10—C11129.7 (3)C30—C31—H311119.5
C9—C10—H101115.4C32—C31—H311118.5
C11—C10—H101114.9C18—C32—C27121.4 (2)
C10—C11—C12117.9 (3)C18—C32—C31119.5 (2)
C10—C11—C16123.7 (2)C27—C32—C31119.0 (2)
C12—C11—C16118.4 (3)C34—C33—O4111.5 (3)
C11—C12—C13121.5 (3)C34—C33—H331107.5
C11—C12—H121119.0O4—C33—H331109.5
C13—C12—H121119.4C34—C33—H332107.9
C12—C13—C14119.8 (3)O4—C33—H332110.1
C12—C13—H131119.7H331—C33—H332110.3
C14—C13—H131120.5C33—C34—O3111.8 (3)
C13—C14—C15119.5 (3)C33—C34—H341109.3
C13—C14—H141120.1O3—C34—H341109.4
C15—C14—H141120.4C33—C34—H342108.3
C14—C15—C16121.7 (3)O3—C34—H342107.3
C14—C15—H151119.5H341—C34—H342110.8
C16—C15—H151118.8C36—C35—O3112.0 (3)
C2—C16—C11121.4 (2)C36—C35—H351110.5
C2—C16—C15119.6 (3)O3—C35—H351111.0
C11—C16—C15118.9 (2)C36—C35—H352108.2
C18—C17—O2120.9 (2)O3—C35—H352107.7
C18—C17—N2116.7 (2)H351—C35—H352107.2
O2—C17—N2122.3 (3)C35—C36—O4111.7 (3)
C17—C18—C19112.4 (2)C35—C36—H361109.1
C17—C18—C32111.3 (2)O4—C36—H361108.7
C19—C18—C32115.1 (2)C35—C36—H362110.6
C17—C18—H181105.2O4—C36—H362108.0
C19—C18—H181106.1H361—C36—H362108.7
C32—C18—H181105.9C1—N1—H12120.5
C18—C19—C20119.5 (3)C1—N1—H11118.2
C18—C19—C24120.9 (2)H12—N1—H11121.2
C20—C19—C24119.4 (2)C33—O4—C36111.5 (3)
C19—C20—C21121.4 (3)C17—N2—H13118.9
C19—C20—H201118.2C17—N2—H14120.4
C21—C20—H201120.4H13—N2—H14120.7
C20—C21—C22119.7 (3)C34—O3—C35111.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H11···O2i0.852.112.962 (3)171
N1—H12···O4i0.872.222.978 (3)145
N2—H13···O1ii0.871.952.823 (3)177
N2—H14···O3ii0.872.533.040 (3)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H11⋯O2i0.852.112.962 (3)171
N1—H12⋯O4i0.872.222.978 (3)145
N2—H13⋯O1ii0.871.952.823 (3)177
N2—H14⋯O3ii0.872.533.040 (3)119

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Indexing powder patterns in physical form screening: instrumentation and data quality.

Authors:  Alastair J Florence; Bruno Baumgartner; Chris Weston; Norman Shankland; Alan R Kennedy; Kenneth Shankland; William I F David
Journal:  J Pharm Sci       Date:  2003-09       Impact factor: 3.534

2.  ANTICONVULSANTS. I. DIBENZO(A,D)CYCLOHEPTADIENE-5-CARBOXAMIDE AND RELATED COMPOUNDS.

Authors:  M A DAVIS; S O WINTHROP; R A THOMAS; F HERR; M P CHAREST; R GAUDRY
Journal:  J Med Chem       Date:  1964-01       Impact factor: 7.446

3.  An automated parallel crystallisation search for predicted crystal structures and packing motifs of carbamazepine.

Authors:  Alastair J Florence; Andrea Johnston; Sarah L Price; Harriott Nowell; Alan R Kennedy; Norman Shankland
Journal:  J Pharm Sci       Date:  2006-09       Impact factor: 3.534

4.  An orthorhombic polymorph of 10,11-dihydrocarbamazepine.

Authors:  William T A Harrison; H S Yathirajan; H G Anilkumar
Journal:  Acta Crystallogr C       Date:  2006-04-13       Impact factor: 1.172

5.  Liquid chromatographic methods for assay of carbamazepine, 10,11-dihydrocarbamazepine, and related compounds in carbamazepine drug substance and tablets.

Authors:  T D Cyr; F Matsui; R W Sears; N M Curran; E G Lovering
Journal:  J Assoc Off Anal Chem       Date:  1987 Sep-Oct
  5 in total

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