Literature DB >> 21202961

1-Hydroxy-ethyl-2-methyl-5-nitro-imidazolium 3-carb-oxy-4-hydroxy-benzene-sulfonate.

Bo Yang1.   

Abstract

Cocrystallization of 1-hydroxy-ethyl-2-methyl-5-nitroimidazole (metronidazole) and 5-sulfosalicylic acid (5-H(2)SSA) from methanol solution yields the title salt, C(6)H(10)N(3)O(3) (+)·C(7)H(5)O(6)S(-). In the crystal structure, the ions are linked by a combination of inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional framework. The hydroxyl group of the cation is disordered over two sites in a 0.860 (4):0.140 (4) ratio.

Entities:  

Year:  2008        PMID: 21202961      PMCID: PMC2961761          DOI: 10.1107/S1600536808018643

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Athar et al. (2005 ▶); Bharti et al. (2002 ▶); Castelli et al. (2000 ▶); Cohen-Jonathan et al. (2001 ▶); Crozet et al. (2002 ▶); Galván-Tejada et al. (2002 ▶); Hodgkiss (1998 ▶); Kennedy et al. (2006 ▶); Meng et al. (2007 ▶); Skupin et al. (1997 ▶); Wu et al. (2003 ▶).

Experimental

Crystal data

C6H10N3O3 +·C7H5O6S M = 389.34 Monoclinic, a = 8.8438 (3) Å b = 13.0249 (4) Å c = 14.148 (5) Å β = 100.413 (1)° V = 1602.9 (6) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 294 (2) K 0.35 × 0.26 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.904, T max = 0.950 17399 measured reflections 3503 independent reflections 3156 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.118 S = 1.06 3503 reflections 262 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808018643/lh2643sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018643/lh2643Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H10N3O3+·C7H5O6SF000 = 808
Mr = 389.34Dx = 1.613 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9747 reflections
a = 8.8438 (3) Åθ = 2.5–28.2º
b = 13.0249 (4) ŵ = 0.26 mm1
c = 14.148 (5) ÅT = 294 (2) K
β = 100.4130 (10)ºBlock, colorless
V = 1602.9 (6) Å30.35 × 0.26 × 0.20 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer3503 independent reflections
Radiation source: fine focus sealed Siemens Mo tube3156 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 294(2) Kθmax = 27.0º
0.3° wide ω exposures scansθmin = 2.1º
Absorption correction: multi-scan(SADABS; Sheldrick, 1997)h = −11→11
Tmin = 0.905, Tmax = 0.950k = −16→16
17399 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.118  w = 1/[σ2(Fo2) + (0.0695P)2 + 0.4716P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3503 reflectionsΔρmax = 0.32 e Å3
262 parametersΔρmin = −0.30 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.26714 (18)0.68882 (13)0.68052 (11)0.0389 (3)
C20.3234 (2)0.78986 (13)0.68903 (12)0.0441 (4)
C30.4814 (2)0.80629 (14)0.69525 (14)0.0520 (4)
H30.51980.87290.70070.062*
C40.5807 (2)0.72533 (14)0.69348 (13)0.0462 (4)
H40.68510.73760.69650.055*
C50.52498 (18)0.62468 (13)0.68713 (11)0.0380 (3)
C60.36914 (18)0.60747 (13)0.68103 (11)0.0380 (3)
H60.33200.54050.67720.046*
C70.1012 (2)0.67003 (14)0.67435 (13)0.0433 (4)
C80.1649 (2)0.27776 (14)0.56001 (12)0.0443 (4)
C90.2283 (2)0.36913 (14)0.54592 (13)0.0474 (4)
H90.17820.43180.53420.057*
C100.41167 (19)0.25196 (13)0.56990 (11)0.0405 (4)
C110.5662 (2)0.20700 (17)0.58081 (16)0.0591 (5)
H11A0.63760.25840.56800.089*
H11B0.56500.15120.53630.089*
H11C0.59690.18200.64520.089*
C120.2655 (3)0.09157 (14)0.58498 (13)0.0546 (5)
H12A0.19350.07640.62730.065*
H12B0.36470.06330.61370.065*
C130.2110 (3)0.04186 (16)0.48829 (16)0.0625 (6)
H13A0.2000−0.03150.49650.075*0.860 (4)
H13B0.11130.06940.45970.075*0.860 (4)
H13C0.29600.04040.45350.075*0.140 (4)
H13D0.1834−0.02880.49870.075*0.140 (4)
N10.27916 (17)0.20437 (10)0.57531 (10)0.0415 (3)
N20.38028 (18)0.35061 (12)0.55237 (11)0.0441 (3)
H20.447 (3)0.3933 (19)0.5509 (15)0.055 (6)*
N30.0052 (2)0.26065 (16)0.56153 (12)0.0582 (4)
O10.06220 (15)0.57238 (10)0.66817 (11)0.0551 (4)
H1−0.029 (3)0.567 (2)0.6806 (19)0.083*
O20.00803 (16)0.73868 (11)0.67490 (13)0.0644 (4)
O30.23266 (19)0.87220 (10)0.69337 (12)0.0612 (4)
H3A0.144 (4)0.849 (3)0.688 (2)0.092*
O40.80111 (14)0.55223 (12)0.72322 (11)0.0577 (4)
O50.59335 (15)0.44064 (11)0.74685 (10)0.0552 (4)
O60.62653 (14)0.48356 (9)0.58626 (9)0.0447 (3)
O7−0.0358 (2)0.17473 (15)0.58045 (15)0.0874 (6)
O8−0.0796 (2)0.33520 (18)0.54514 (15)0.0865 (6)
O90.3138 (2)0.06004 (17)0.42931 (13)0.0725 (7)0.860 (4)
H9A0.260 (4)0.065 (3)0.3759 (14)0.109*0.860 (4)
O9'0.1003 (12)0.0853 (9)0.4339 (7)0.066 (4)0.140 (4)
H9'0.13 (3)0.135 (12)0.408 (15)0.099*0.140 (4)
S10.64580 (4)0.51687 (3)0.68609 (3)0.03782 (14)
U11U22U33U12U13U23
C10.0401 (8)0.0393 (8)0.0371 (8)−0.0030 (7)0.0064 (6)−0.0011 (6)
C20.0514 (10)0.0369 (8)0.0437 (9)−0.0007 (7)0.0078 (7)0.0033 (7)
C30.0565 (11)0.0377 (9)0.0610 (11)−0.0127 (8)0.0084 (9)0.0039 (8)
C40.0425 (9)0.0445 (9)0.0514 (10)−0.0126 (7)0.0077 (7)0.0038 (7)
C50.0367 (8)0.0395 (8)0.0381 (8)−0.0048 (6)0.0070 (6)0.0012 (6)
C60.0380 (8)0.0358 (8)0.0404 (8)−0.0065 (6)0.0075 (6)−0.0027 (6)
C70.0412 (8)0.0417 (9)0.0472 (9)0.0003 (7)0.0088 (7)−0.0034 (7)
C80.0451 (9)0.0486 (10)0.0391 (8)−0.0103 (7)0.0073 (7)−0.0059 (7)
C90.0491 (9)0.0401 (9)0.0517 (10)−0.0048 (7)0.0058 (8)−0.0027 (7)
C100.0464 (9)0.0394 (8)0.0343 (8)−0.0087 (7)0.0036 (6)−0.0016 (6)
C110.0510 (10)0.0617 (12)0.0620 (12)0.0035 (9)0.0035 (9)0.0017 (10)
C120.0836 (14)0.0359 (9)0.0447 (9)−0.0151 (9)0.0128 (9)0.0021 (7)
C130.0888 (16)0.0447 (10)0.0561 (12)−0.0255 (11)0.0188 (11)−0.0107 (9)
N10.0520 (8)0.0365 (7)0.0351 (7)−0.0120 (6)0.0060 (6)−0.0017 (5)
N20.0465 (8)0.0371 (7)0.0480 (8)−0.0133 (6)0.0066 (6)−0.0014 (6)
N30.0501 (9)0.0760 (12)0.0500 (9)−0.0176 (9)0.0134 (7)−0.0135 (8)
O10.0359 (6)0.0428 (7)0.0875 (10)−0.0024 (5)0.0135 (6)−0.0028 (6)
O20.0482 (7)0.0479 (8)0.0985 (12)0.0063 (6)0.0172 (7)−0.0104 (7)
O30.0614 (8)0.0360 (7)0.0852 (11)0.0023 (6)0.0104 (8)0.0021 (7)
O40.0333 (6)0.0637 (9)0.0728 (9)−0.0072 (6)0.0014 (6)−0.0126 (7)
O50.0534 (7)0.0544 (8)0.0578 (8)0.0007 (6)0.0105 (6)0.0214 (6)
O60.0486 (7)0.0396 (6)0.0456 (7)−0.0045 (5)0.0079 (5)−0.0006 (5)
O70.0759 (11)0.0821 (12)0.1140 (15)−0.0409 (10)0.0429 (10)−0.0266 (11)
O80.0517 (9)0.1110 (16)0.0978 (13)0.0069 (10)0.0161 (9)0.0071 (11)
O90.0805 (13)0.0892 (14)0.0503 (10)−0.0317 (11)0.0186 (9)−0.0189 (9)
O9'0.082 (8)0.066 (7)0.047 (6)0.001 (6)0.006 (5)−0.013 (5)
S10.0307 (2)0.0400 (2)0.0417 (2)−0.00536 (14)0.00351 (15)0.00333 (15)
C1—C61.391 (2)C11—H11B0.9600
C1—C21.405 (2)C11—H11C0.9600
C1—C71.475 (2)C12—N11.482 (2)
C2—O31.348 (2)C12—C131.512 (3)
C2—C31.400 (3)C12—H12A0.9700
C3—C41.376 (3)C12—H12B0.9700
C3—H30.9300C13—O9'1.265 (8)
C4—C51.398 (2)C13—O91.361 (3)
C4—H40.9300C13—H13A0.9700
C5—C61.384 (2)C13—H13B0.9700
C5—S11.7662 (17)C13—H13C0.9700
C6—H60.9300C13—H13D0.9700
C7—O21.217 (2)N2—H20.81 (2)
C7—O11.317 (2)N3—O71.221 (3)
C8—C91.346 (2)N3—O81.223 (3)
C8—N11.379 (2)O1—H10.86 (3)
C8—N31.434 (2)O3—H3A0.83 (3)
C9—N21.352 (2)O4—S11.4539 (12)
C9—H90.9300O5—S11.4437 (13)
C10—N21.328 (2)O6—S11.4579 (14)
C10—N11.340 (2)O9—H13C0.4764
C10—C111.469 (3)O9—H9A0.82 (1)
C11—H11A0.9600O9'—H9'0.82 (1)
C6—C1—C2119.60 (15)C13—C12—H12B109.4
C6—C1—C7120.76 (15)H12A—C12—H12B108.0
C2—C1—C7119.61 (15)O9'—C13—O994.5 (6)
O3—C2—C3118.11 (16)O9'—C13—C12116.4 (5)
O3—C2—C1123.01 (16)O9—C13—C12109.93 (18)
C3—C2—C1118.87 (16)O9'—C13—H13A115.5
C4—C3—C2120.97 (16)O9—C13—H13A109.7
C4—C3—H3119.5C12—C13—H13A109.7
C2—C3—H3119.5O9—C13—H13B109.7
C3—C4—C5120.09 (16)C12—C13—H13B109.7
C3—C4—H4120.0H13A—C13—H13B108.2
C5—C4—H4120.0O9'—C13—H13C106.6
C6—C5—C4119.46 (16)C12—C13—H13C108.5
C6—C5—S1117.90 (12)H13A—C13—H13C98.3
C4—C5—S1122.63 (13)H13B—C13—H13C121.6
C5—C6—C1120.98 (15)O9'—C13—H13D109.2
C5—C6—H6119.5O9—C13—H13D118.2
C1—C6—H6119.5C12—C13—H13D108.4
O2—C7—O1122.75 (17)H13B—C13—H13D100.4
O2—C7—C1123.05 (17)H13C—C13—H13D107.4
O1—C7—C1114.20 (15)C10—N1—C8107.09 (14)
C9—C8—N1108.85 (15)C10—N1—C12123.38 (16)
C9—C8—N3125.28 (18)C8—N1—C12129.19 (16)
N1—C8—N3125.85 (17)C10—N2—C9110.91 (15)
C8—C9—N2105.54 (16)C10—N2—H2122.7 (16)
C8—C9—H9127.2C9—N2—H2126.1 (16)
N2—C9—H9127.2O7—N3—O8124.99 (19)
N2—C10—N1107.62 (16)O7—N3—C8118.5 (2)
N2—C10—C11124.35 (17)O8—N3—C8116.46 (19)
N1—C10—C11128.03 (17)C7—O1—H1108 (2)
C10—C11—H11A109.5C2—O3—H3A105 (2)
C10—C11—H11B109.5C13—O9—H9A104 (3)
H11A—C11—H11B109.5H13C—O9—H9A119.2
C10—C11—H11C109.5C13—O9'—H9'109 (10)
H11A—C11—H11C109.5O5—S1—O4112.76 (9)
H11B—C11—H11C109.5O5—S1—O6112.23 (8)
N1—C12—C13111.03 (16)O4—S1—O6112.44 (8)
N1—C12—H12A109.4O5—S1—C5106.37 (8)
C13—C12—H12A109.4O4—S1—C5106.18 (8)
N1—C12—H12B109.4O6—S1—C5106.24 (7)
C6—C1—C2—O3−176.99 (16)C11—C10—N1—C8−179.79 (17)
C7—C1—C2—O31.0 (3)N2—C10—N1—C12174.03 (15)
C6—C1—C2—C31.7 (2)C11—C10—N1—C12−6.0 (3)
C7—C1—C2—C3179.71 (16)C9—C8—N1—C10−0.29 (19)
O3—C2—C3—C4178.52 (17)N3—C8—N1—C10−178.63 (16)
C1—C2—C3—C4−0.2 (3)C9—C8—N1—C12−173.61 (17)
C2—C3—C4—C5−1.2 (3)N3—C8—N1—C128.0 (3)
C3—C4—C5—C61.1 (3)C13—C12—N1—C10−96.5 (2)
C3—C4—C5—S1−179.15 (14)C13—C12—N1—C875.8 (2)
C4—C5—C6—C10.4 (2)N1—C10—N2—C9−0.10 (19)
S1—C5—C6—C1−179.38 (12)C11—C10—N2—C9179.92 (17)
C2—C1—C6—C5−1.8 (2)C8—C9—N2—C10−0.1 (2)
C7—C1—C6—C5−179.78 (15)C9—C8—N3—O7−175.94 (19)
C6—C1—C7—O2179.04 (18)N1—C8—N3—O72.1 (3)
C2—C1—C7—O21.1 (3)C9—C8—N3—O82.8 (3)
C6—C1—C7—O1−1.0 (2)N1—C8—N3—O8−179.15 (17)
C2—C1—C7—O1−178.93 (16)C6—C5—S1—O5−42.03 (15)
N1—C8—C9—N20.23 (19)C4—C5—S1—O5138.20 (15)
N3—C8—C9—N2178.58 (16)C6—C5—S1—O4−162.37 (13)
N1—C12—C13—O9'−44.9 (7)C4—C5—S1—O417.86 (17)
N1—C12—C13—O961.0 (3)C6—C5—S1—O677.73 (14)
N2—C10—N1—C80.23 (18)C4—C5—S1—O6−102.04 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O20.83 (3)1.86 (3)2.618 (2)151 (3)
N2—H2···O60.81 (2)1.97 (2)2.7557 (19)163 (2)
C13—H13D···O7i0.972.463.280 (3)142
C11—H11C···O4ii0.962.553.457 (3)157
O9—H9A···O5iii0.82 (1)2.129 (13)2.940 (2)170 (4)
O9'—H9'···O2iv0.82 (1)2.258 (13)2.830 (2)127 (2)
O1—H1···O4v0.86 (3)1.73 (3)2.5801 (19)171 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O20.83 (3)1.86 (3)2.618 (2)151 (3)
N2—H2⋯O60.81 (2)1.97 (2)2.7557 (19)163 (2)
C13—H13D⋯O7i0.972.463.280 (3)142
C11—H11C⋯O4ii0.962.553.457 (3)157
O9—H9A⋯O5iii0.82 (1)2.129 (13)2.940 (2)170 (4)
O9′—H9′⋯O2iv0.82 (1)2.258 (13)2.830 (2)127 (2)
O1—H1⋯O4v0.86 (3)1.73 (3)2.5801 (19)171 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-06-17
  1 in total

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