| Literature DB >> 21202961 |
Bo Yang1.
Abstract
Cocrystallization of 1-hydroxy-ethyl-2-methyl-5-nitroimidazole (metronidazole) and 5-sulfosalicylic acid (5-H(2)SSA) from methanol solution yields the title salt, C(6)H(10)N(3)O(3) (+)·C(7)H(5)O(6)S(-). In the crystal structure, the ions are linked by a combination of inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional framework. The hydroxyl group of the cation is disordered over two sites in a 0.860 (4):0.140 (4) ratio.Entities:
Year: 2008 PMID: 21202961 PMCID: PMC2961761 DOI: 10.1107/S1600536808018643
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H10N3O3+·C7H5O6S– | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9747 reflections |
| θ = 2.5–28.2º | |
| µ = 0.26 mm−1 | |
| β = 100.4130 (10)º | Block, colorless |
| 0.35 × 0.26 × 0.20 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 3503 independent reflections |
| Radiation source: fine focus sealed Siemens Mo tube | 3156 reflections with |
| Monochromator: graphite | |
| θmax = 27.0º | |
| 0.3° wide ω exposures scans | θmin = 2.1º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1997) | |
| 17399 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 3503 reflections | Δρmax = 0.32 e Å−3 |
| 262 parameters | Δρmin = −0.30 e Å−3 |
| 4 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.26714 (18) | 0.68882 (13) | 0.68052 (11) | 0.0389 (3) | |
| C2 | 0.3234 (2) | 0.78986 (13) | 0.68903 (12) | 0.0441 (4) | |
| C3 | 0.4814 (2) | 0.80629 (14) | 0.69525 (14) | 0.0520 (4) | |
| H3 | 0.5198 | 0.8729 | 0.7007 | 0.062* | |
| C4 | 0.5807 (2) | 0.72533 (14) | 0.69348 (13) | 0.0462 (4) | |
| H4 | 0.6851 | 0.7376 | 0.6965 | 0.055* | |
| C5 | 0.52498 (18) | 0.62468 (13) | 0.68713 (11) | 0.0380 (3) | |
| C6 | 0.36914 (18) | 0.60747 (13) | 0.68103 (11) | 0.0380 (3) | |
| H6 | 0.3320 | 0.5405 | 0.6772 | 0.046* | |
| C7 | 0.1012 (2) | 0.67003 (14) | 0.67435 (13) | 0.0433 (4) | |
| C8 | 0.1649 (2) | 0.27776 (14) | 0.56001 (12) | 0.0443 (4) | |
| C9 | 0.2283 (2) | 0.36913 (14) | 0.54592 (13) | 0.0474 (4) | |
| H9 | 0.1782 | 0.4318 | 0.5342 | 0.057* | |
| C10 | 0.41167 (19) | 0.25196 (13) | 0.56990 (11) | 0.0405 (4) | |
| C11 | 0.5662 (2) | 0.20700 (17) | 0.58081 (16) | 0.0591 (5) | |
| H11A | 0.6376 | 0.2584 | 0.5680 | 0.089* | |
| H11B | 0.5650 | 0.1512 | 0.5363 | 0.089* | |
| H11C | 0.5969 | 0.1820 | 0.6452 | 0.089* | |
| C12 | 0.2655 (3) | 0.09157 (14) | 0.58498 (13) | 0.0546 (5) | |
| H12A | 0.1935 | 0.0764 | 0.6273 | 0.065* | |
| H12B | 0.3647 | 0.0633 | 0.6137 | 0.065* | |
| C13 | 0.2110 (3) | 0.04186 (16) | 0.48829 (16) | 0.0625 (6) | |
| H13A | 0.2000 | −0.0315 | 0.4965 | 0.075* | 0.860 (4) |
| H13B | 0.1113 | 0.0694 | 0.4597 | 0.075* | 0.860 (4) |
| H13C | 0.2960 | 0.0404 | 0.4535 | 0.075* | 0.140 (4) |
| H13D | 0.1834 | −0.0288 | 0.4987 | 0.075* | 0.140 (4) |
| N1 | 0.27916 (17) | 0.20437 (10) | 0.57531 (10) | 0.0415 (3) | |
| N2 | 0.38028 (18) | 0.35061 (12) | 0.55237 (11) | 0.0441 (3) | |
| H2 | 0.447 (3) | 0.3933 (19) | 0.5509 (15) | 0.055 (6)* | |
| N3 | 0.0052 (2) | 0.26065 (16) | 0.56153 (12) | 0.0582 (4) | |
| O1 | 0.06220 (15) | 0.57238 (10) | 0.66817 (11) | 0.0551 (4) | |
| H1 | −0.029 (3) | 0.567 (2) | 0.6806 (19) | 0.083* | |
| O2 | 0.00803 (16) | 0.73868 (11) | 0.67490 (13) | 0.0644 (4) | |
| O3 | 0.23266 (19) | 0.87220 (10) | 0.69337 (12) | 0.0612 (4) | |
| H3A | 0.144 (4) | 0.849 (3) | 0.688 (2) | 0.092* | |
| O4 | 0.80111 (14) | 0.55223 (12) | 0.72322 (11) | 0.0577 (4) | |
| O5 | 0.59335 (15) | 0.44064 (11) | 0.74685 (10) | 0.0552 (4) | |
| O6 | 0.62653 (14) | 0.48356 (9) | 0.58626 (9) | 0.0447 (3) | |
| O7 | −0.0358 (2) | 0.17473 (15) | 0.58045 (15) | 0.0874 (6) | |
| O8 | −0.0796 (2) | 0.33520 (18) | 0.54514 (15) | 0.0865 (6) | |
| O9 | 0.3138 (2) | 0.06004 (17) | 0.42931 (13) | 0.0725 (7) | 0.860 (4) |
| H9A | 0.260 (4) | 0.065 (3) | 0.3759 (14) | 0.109* | 0.860 (4) |
| O9' | 0.1003 (12) | 0.0853 (9) | 0.4339 (7) | 0.066 (4) | 0.140 (4) |
| H9' | 0.13 (3) | 0.135 (12) | 0.408 (15) | 0.099* | 0.140 (4) |
| S1 | 0.64580 (4) | 0.51687 (3) | 0.68609 (3) | 0.03782 (14) |
| C1 | 0.0401 (8) | 0.0393 (8) | 0.0371 (8) | −0.0030 (7) | 0.0064 (6) | −0.0011 (6) |
| C2 | 0.0514 (10) | 0.0369 (8) | 0.0437 (9) | −0.0007 (7) | 0.0078 (7) | 0.0033 (7) |
| C3 | 0.0565 (11) | 0.0377 (9) | 0.0610 (11) | −0.0127 (8) | 0.0084 (9) | 0.0039 (8) |
| C4 | 0.0425 (9) | 0.0445 (9) | 0.0514 (10) | −0.0126 (7) | 0.0077 (7) | 0.0038 (7) |
| C5 | 0.0367 (8) | 0.0395 (8) | 0.0381 (8) | −0.0048 (6) | 0.0070 (6) | 0.0012 (6) |
| C6 | 0.0380 (8) | 0.0358 (8) | 0.0404 (8) | −0.0065 (6) | 0.0075 (6) | −0.0027 (6) |
| C7 | 0.0412 (8) | 0.0417 (9) | 0.0472 (9) | 0.0003 (7) | 0.0088 (7) | −0.0034 (7) |
| C8 | 0.0451 (9) | 0.0486 (10) | 0.0391 (8) | −0.0103 (7) | 0.0073 (7) | −0.0059 (7) |
| C9 | 0.0491 (9) | 0.0401 (9) | 0.0517 (10) | −0.0048 (7) | 0.0058 (8) | −0.0027 (7) |
| C10 | 0.0464 (9) | 0.0394 (8) | 0.0343 (8) | −0.0087 (7) | 0.0036 (6) | −0.0016 (6) |
| C11 | 0.0510 (10) | 0.0617 (12) | 0.0620 (12) | 0.0035 (9) | 0.0035 (9) | 0.0017 (10) |
| C12 | 0.0836 (14) | 0.0359 (9) | 0.0447 (9) | −0.0151 (9) | 0.0128 (9) | 0.0021 (7) |
| C13 | 0.0888 (16) | 0.0447 (10) | 0.0561 (12) | −0.0255 (11) | 0.0188 (11) | −0.0107 (9) |
| N1 | 0.0520 (8) | 0.0365 (7) | 0.0351 (7) | −0.0120 (6) | 0.0060 (6) | −0.0017 (5) |
| N2 | 0.0465 (8) | 0.0371 (7) | 0.0480 (8) | −0.0133 (6) | 0.0066 (6) | −0.0014 (6) |
| N3 | 0.0501 (9) | 0.0760 (12) | 0.0500 (9) | −0.0176 (9) | 0.0134 (7) | −0.0135 (8) |
| O1 | 0.0359 (6) | 0.0428 (7) | 0.0875 (10) | −0.0024 (5) | 0.0135 (6) | −0.0028 (6) |
| O2 | 0.0482 (7) | 0.0479 (8) | 0.0985 (12) | 0.0063 (6) | 0.0172 (7) | −0.0104 (7) |
| O3 | 0.0614 (8) | 0.0360 (7) | 0.0852 (11) | 0.0023 (6) | 0.0104 (8) | 0.0021 (7) |
| O4 | 0.0333 (6) | 0.0637 (9) | 0.0728 (9) | −0.0072 (6) | 0.0014 (6) | −0.0126 (7) |
| O5 | 0.0534 (7) | 0.0544 (8) | 0.0578 (8) | 0.0007 (6) | 0.0105 (6) | 0.0214 (6) |
| O6 | 0.0486 (7) | 0.0396 (6) | 0.0456 (7) | −0.0045 (5) | 0.0079 (5) | −0.0006 (5) |
| O7 | 0.0759 (11) | 0.0821 (12) | 0.1140 (15) | −0.0409 (10) | 0.0429 (10) | −0.0266 (11) |
| O8 | 0.0517 (9) | 0.1110 (16) | 0.0978 (13) | 0.0069 (10) | 0.0161 (9) | 0.0071 (11) |
| O9 | 0.0805 (13) | 0.0892 (14) | 0.0503 (10) | −0.0317 (11) | 0.0186 (9) | −0.0189 (9) |
| O9' | 0.082 (8) | 0.066 (7) | 0.047 (6) | 0.001 (6) | 0.006 (5) | −0.013 (5) |
| S1 | 0.0307 (2) | 0.0400 (2) | 0.0417 (2) | −0.00536 (14) | 0.00351 (15) | 0.00333 (15) |
| C1—C6 | 1.391 (2) | C11—H11B | 0.9600 |
| C1—C2 | 1.405 (2) | C11—H11C | 0.9600 |
| C1—C7 | 1.475 (2) | C12—N1 | 1.482 (2) |
| C2—O3 | 1.348 (2) | C12—C13 | 1.512 (3) |
| C2—C3 | 1.400 (3) | C12—H12A | 0.9700 |
| C3—C4 | 1.376 (3) | C12—H12B | 0.9700 |
| C3—H3 | 0.9300 | C13—O9' | 1.265 (8) |
| C4—C5 | 1.398 (2) | C13—O9 | 1.361 (3) |
| C4—H4 | 0.9300 | C13—H13A | 0.9700 |
| C5—C6 | 1.384 (2) | C13—H13B | 0.9700 |
| C5—S1 | 1.7662 (17) | C13—H13C | 0.9700 |
| C6—H6 | 0.9300 | C13—H13D | 0.9700 |
| C7—O2 | 1.217 (2) | N2—H2 | 0.81 (2) |
| C7—O1 | 1.317 (2) | N3—O7 | 1.221 (3) |
| C8—C9 | 1.346 (2) | N3—O8 | 1.223 (3) |
| C8—N1 | 1.379 (2) | O1—H1 | 0.86 (3) |
| C8—N3 | 1.434 (2) | O3—H3A | 0.83 (3) |
| C9—N2 | 1.352 (2) | O4—S1 | 1.4539 (12) |
| C9—H9 | 0.9300 | O5—S1 | 1.4437 (13) |
| C10—N2 | 1.328 (2) | O6—S1 | 1.4579 (14) |
| C10—N1 | 1.340 (2) | O9—H13C | 0.4764 |
| C10—C11 | 1.469 (3) | O9—H9A | 0.82 (1) |
| C11—H11A | 0.9600 | O9'—H9' | 0.82 (1) |
| C6—C1—C2 | 119.60 (15) | C13—C12—H12B | 109.4 |
| C6—C1—C7 | 120.76 (15) | H12A—C12—H12B | 108.0 |
| C2—C1—C7 | 119.61 (15) | O9'—C13—O9 | 94.5 (6) |
| O3—C2—C3 | 118.11 (16) | O9'—C13—C12 | 116.4 (5) |
| O3—C2—C1 | 123.01 (16) | O9—C13—C12 | 109.93 (18) |
| C3—C2—C1 | 118.87 (16) | O9'—C13—H13A | 115.5 |
| C4—C3—C2 | 120.97 (16) | O9—C13—H13A | 109.7 |
| C4—C3—H3 | 119.5 | C12—C13—H13A | 109.7 |
| C2—C3—H3 | 119.5 | O9—C13—H13B | 109.7 |
| C3—C4—C5 | 120.09 (16) | C12—C13—H13B | 109.7 |
| C3—C4—H4 | 120.0 | H13A—C13—H13B | 108.2 |
| C5—C4—H4 | 120.0 | O9'—C13—H13C | 106.6 |
| C6—C5—C4 | 119.46 (16) | C12—C13—H13C | 108.5 |
| C6—C5—S1 | 117.90 (12) | H13A—C13—H13C | 98.3 |
| C4—C5—S1 | 122.63 (13) | H13B—C13—H13C | 121.6 |
| C5—C6—C1 | 120.98 (15) | O9'—C13—H13D | 109.2 |
| C5—C6—H6 | 119.5 | O9—C13—H13D | 118.2 |
| C1—C6—H6 | 119.5 | C12—C13—H13D | 108.4 |
| O2—C7—O1 | 122.75 (17) | H13B—C13—H13D | 100.4 |
| O2—C7—C1 | 123.05 (17) | H13C—C13—H13D | 107.4 |
| O1—C7—C1 | 114.20 (15) | C10—N1—C8 | 107.09 (14) |
| C9—C8—N1 | 108.85 (15) | C10—N1—C12 | 123.38 (16) |
| C9—C8—N3 | 125.28 (18) | C8—N1—C12 | 129.19 (16) |
| N1—C8—N3 | 125.85 (17) | C10—N2—C9 | 110.91 (15) |
| C8—C9—N2 | 105.54 (16) | C10—N2—H2 | 122.7 (16) |
| C8—C9—H9 | 127.2 | C9—N2—H2 | 126.1 (16) |
| N2—C9—H9 | 127.2 | O7—N3—O8 | 124.99 (19) |
| N2—C10—N1 | 107.62 (16) | O7—N3—C8 | 118.5 (2) |
| N2—C10—C11 | 124.35 (17) | O8—N3—C8 | 116.46 (19) |
| N1—C10—C11 | 128.03 (17) | C7—O1—H1 | 108 (2) |
| C10—C11—H11A | 109.5 | C2—O3—H3A | 105 (2) |
| C10—C11—H11B | 109.5 | C13—O9—H9A | 104 (3) |
| H11A—C11—H11B | 109.5 | H13C—O9—H9A | 119.2 |
| C10—C11—H11C | 109.5 | C13—O9'—H9' | 109 (10) |
| H11A—C11—H11C | 109.5 | O5—S1—O4 | 112.76 (9) |
| H11B—C11—H11C | 109.5 | O5—S1—O6 | 112.23 (8) |
| N1—C12—C13 | 111.03 (16) | O4—S1—O6 | 112.44 (8) |
| N1—C12—H12A | 109.4 | O5—S1—C5 | 106.37 (8) |
| C13—C12—H12A | 109.4 | O4—S1—C5 | 106.18 (8) |
| N1—C12—H12B | 109.4 | O6—S1—C5 | 106.24 (7) |
| C6—C1—C2—O3 | −176.99 (16) | C11—C10—N1—C8 | −179.79 (17) |
| C7—C1—C2—O3 | 1.0 (3) | N2—C10—N1—C12 | 174.03 (15) |
| C6—C1—C2—C3 | 1.7 (2) | C11—C10—N1—C12 | −6.0 (3) |
| C7—C1—C2—C3 | 179.71 (16) | C9—C8—N1—C10 | −0.29 (19) |
| O3—C2—C3—C4 | 178.52 (17) | N3—C8—N1—C10 | −178.63 (16) |
| C1—C2—C3—C4 | −0.2 (3) | C9—C8—N1—C12 | −173.61 (17) |
| C2—C3—C4—C5 | −1.2 (3) | N3—C8—N1—C12 | 8.0 (3) |
| C3—C4—C5—C6 | 1.1 (3) | C13—C12—N1—C10 | −96.5 (2) |
| C3—C4—C5—S1 | −179.15 (14) | C13—C12—N1—C8 | 75.8 (2) |
| C4—C5—C6—C1 | 0.4 (2) | N1—C10—N2—C9 | −0.10 (19) |
| S1—C5—C6—C1 | −179.38 (12) | C11—C10—N2—C9 | 179.92 (17) |
| C2—C1—C6—C5 | −1.8 (2) | C8—C9—N2—C10 | −0.1 (2) |
| C7—C1—C6—C5 | −179.78 (15) | C9—C8—N3—O7 | −175.94 (19) |
| C6—C1—C7—O2 | 179.04 (18) | N1—C8—N3—O7 | 2.1 (3) |
| C2—C1—C7—O2 | 1.1 (3) | C9—C8—N3—O8 | 2.8 (3) |
| C6—C1—C7—O1 | −1.0 (2) | N1—C8—N3—O8 | −179.15 (17) |
| C2—C1—C7—O1 | −178.93 (16) | C6—C5—S1—O5 | −42.03 (15) |
| N1—C8—C9—N2 | 0.23 (19) | C4—C5—S1—O5 | 138.20 (15) |
| N3—C8—C9—N2 | 178.58 (16) | C6—C5—S1—O4 | −162.37 (13) |
| N1—C12—C13—O9' | −44.9 (7) | C4—C5—S1—O4 | 17.86 (17) |
| N1—C12—C13—O9 | 61.0 (3) | C6—C5—S1—O6 | 77.73 (14) |
| N2—C10—N1—C8 | 0.23 (18) | C4—C5—S1—O6 | −102.04 (15) |
| H··· | ||||
| O3—H3A···O2 | 0.83 (3) | 1.86 (3) | 2.618 (2) | 151 (3) |
| N2—H2···O6 | 0.81 (2) | 1.97 (2) | 2.7557 (19) | 163 (2) |
| C13—H13D···O7i | 0.97 | 2.46 | 3.280 (3) | 142 |
| C11—H11C···O4ii | 0.96 | 2.55 | 3.457 (3) | 157 |
| O9—H9A···O5iii | 0.82 (1) | 2.129 (13) | 2.940 (2) | 170 (4) |
| O9'—H9'···O2iv | 0.82 (1) | 2.258 (13) | 2.830 (2) | 127 (2) |
| O1—H1···O4v | 0.86 (3) | 1.73 (3) | 2.5801 (19) | 171 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3 | 0.83 (3) | 1.86 (3) | 2.618 (2) | 151 (3) |
| N2—H2⋯O6 | 0.81 (2) | 1.97 (2) | 2.7557 (19) | 163 (2) |
| C13—H13 | 0.97 | 2.46 | 3.280 (3) | 142 |
| C11—H11 | 0.96 | 2.55 | 3.457 (3) | 157 |
| O9—H9 | 0.82 (1) | 2.129 (13) | 2.940 (2) | 170 (4) |
| O9′—H9′⋯O2iv | 0.82 (1) | 2.258 (13) | 2.830 (2) | 127 (2) |
| O1—H1⋯O4v | 0.86 (3) | 1.73 (3) | 2.5801 (19) | 171 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .