Literature DB >> 21202925

Cytenamide-butyric acid (1/1).

Andrea Johnston, Alastair J Florence, Francesca J A Fabbiani, Kenneth Shankland, Colin T Bedford.   

Abstract

Cytenamide forms a 1:1 solvate with butyric acid [systematic name: 5H-dibenzo[a,d]cyclo-hepta-triene-5-carboxamide-butanoic acid (1/1)], C(16)H(13)NO·C(4)H(8)O(2). The title compound crystallizes with one mol-ecule of cytenamide and one of butyric acid in the asymmetric unit; these mol-ecules are linked by N-H⋯O and O-H⋯O hydrogen bonds to form an R(2) (2)(8) heterodimer motif. Pairs of adjacent motifs are further connected via N-H⋯O inter-actions to form a discrete centrosymmetric assembly.

Entities:  

Year:  2008        PMID: 21202925      PMCID: PMC2961685          DOI: 10.1107/S1600536808018059

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details on experimental methods used to obtain the title solvate, see: Davis et al. (1964 ▶); Florence et al. (2003 ▶); Florence, Johnston, Fernandes et al. (2006 ▶). For literature on cytenamide and related mol­ecules, see: Florence, Bedford et al. (2008 ▶); Cyr et al. (1987 ▶); Fleischman et al. (2003 ▶); Florence, Johnston, Price et al. (2006 ▶); Florence, Leech et al. (2006 ▶); Bandoli et al. (1992 ▶); Harrison et al. (2006 ▶); Leech et al. (2007 ▶); Florence, Shankland et al. (2008 ▶). For other related literature, see: Etter (1990 ▶) ; Desiraju & Steiner (1999 ▶).

Experimental

Crystal data

C16H13NO·C4H8O2 M = 323.39 Monoclinic, a = 5.9351 (2) Å b = 16.3595 (5) Å c = 17.6738 (4) Å β = 98.046 (2)° V = 1699.15 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 160 K 0.35 × 0.15 × 0.12 mm

Data collection

Oxford Diffraction Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.91, T max = 0.99 18979 measured reflections 4069 independent reflections 2928 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.088 S = 0.95 4069 reflections 226 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED and SORTAV (Blessing, 1997 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808018059/gk2147sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018059/gk2147Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13NO·C4H8O2F000 = 688
Mr = 323.39Dx = 1.264 Mg m3
Monoclinic, P21/nMelting point: 216.2 K
Hall symbol: -P 2ynMo Kα radiation λ = 0.71073 Å
a = 5.9351 (2) ÅCell parameters from 6486 reflections
b = 16.3595 (5) Åθ = 3–29º
c = 17.6738 (4) ŵ = 0.09 mm1
β = 98.046 (2)ºT = 160 K
V = 1699.15 (9) Å3Block, colourless
Z = 40.35 × 0.15 × 0.12 mm
Oxford Diffraction Gemini diffractometer4069 independent reflections
Radiation source: Enhance (Mo) X-ray Source2928 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.031
Detector resolution: 15.9745 pixels mm-1θmax = 28.7º
T = 160 Kθmin = 2.6º
ω scansh = −7→7
Absorption correction: multi-scan(CrysAlis RED; Oxford Diffraction, 2007)k = 0→21
Tmin = 0.91, Tmax = 0.99l = 0→23
18979 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: geom+difmap
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088  Method = Modified Sheldrick w = 1/[σ2(F2) + (0.03P)2 + 0.5P], where P = [max(Fo2,0) + 2Fc2]/3
S = 0.95(Δ/σ)max = 0.001
4069 reflectionsΔρmax = 0.38 e Å3
226 parametersΔρmin = −0.27 e Å3
3 restraintsExtinction correction: none
xyzUiso*/Ueq
C10.3604 (2)0.32253 (7)0.41898 (7)0.0261
C20.1718 (2)0.36489 (8)0.38294 (7)0.0323
C30.1256 (2)0.36854 (9)0.30423 (8)0.0391
C40.2687 (2)0.33058 (9)0.25996 (7)0.0392
C50.4591 (2)0.28990 (8)0.29445 (7)0.0344
C60.5061 (2)0.28359 (7)0.37441 (7)0.0279
C70.6996 (2)0.23388 (8)0.40716 (7)0.0304
C80.7115 (2)0.18488 (8)0.46816 (7)0.0301
C90.5383 (2)0.17092 (8)0.51782 (6)0.0269
C100.5251 (2)0.09343 (8)0.55037 (7)0.0341
C110.3603 (2)0.07491 (9)0.59538 (8)0.0398
C120.2069 (2)0.13407 (9)0.61005 (8)0.0389
C130.2205 (2)0.21186 (8)0.58012 (7)0.0321
C140.3844 (2)0.23123 (7)0.53434 (6)0.0258
C150.4034 (2)0.31760 (7)0.50530 (6)0.0257
C160.6242 (2)0.35710 (7)0.54306 (7)0.0276
C170.3158 (3)0.57421 (11)0.16558 (9)0.0568
C180.5184 (3)0.60108 (10)0.22080 (8)0.0455
C190.5957 (2)0.53835 (9)0.28103 (8)0.0371
C200.8040 (2)0.56040 (8)0.33497 (7)0.0295
O10.70946 (16)0.33413 (6)0.60746 (5)0.0369
O20.84351 (15)0.53413 (6)0.39986 (5)0.0346
N10.7091 (2)0.41860 (7)0.50777 (6)0.0335
O30.94149 (17)0.61035 (6)0.30567 (5)0.0435
H1510.28280.34880.52490.0293*
H210.07130.39160.41450.0377*
H810.84560.14980.47860.0333*
H710.82930.23320.37900.0372*
H1910.47660.52660.31150.0486*
H1920.62950.48890.25640.0473*
H1310.11550.25360.59140.0383*
H1010.62910.05260.53890.0392*
H410.23380.33170.20570.0465*
H1210.09350.12220.64190.0464*
H510.56370.26360.26410.0395*
H1110.35070.02140.61500.0470*
H1820.47700.65150.24590.0609*
H1810.65030.61200.19460.0611*
H31−0.00990.39710.27940.0463*
H1720.27120.61620.12790.0868*
H1730.18580.56250.19330.0867*
H1710.35040.52400.14020.0875*
H120.834 (2)0.4432 (9)0.5320 (8)0.0446*
H110.652 (2)0.4352 (9)0.4630 (8)0.0433*
H3111.058 (3)0.6243 (11)0.3395 (9)0.0689*
U11U22U33U12U13U23
C10.0283 (6)0.0234 (6)0.0265 (6)−0.0013 (5)0.0032 (5)−0.0008 (5)
C20.0315 (7)0.0305 (7)0.0348 (7)0.0030 (5)0.0040 (5)0.0027 (5)
C30.0366 (8)0.0396 (8)0.0383 (7)0.0032 (6)−0.0041 (6)0.0075 (6)
C40.0476 (8)0.0422 (8)0.0259 (6)−0.0032 (7)−0.0010 (6)0.0030 (6)
C50.0414 (8)0.0345 (8)0.0279 (6)−0.0020 (6)0.0075 (6)−0.0025 (5)
C60.0297 (6)0.0258 (7)0.0279 (6)−0.0019 (5)0.0031 (5)−0.0021 (5)
C70.0287 (6)0.0318 (7)0.0315 (6)0.0018 (5)0.0065 (5)−0.0068 (5)
C80.0270 (6)0.0295 (7)0.0321 (6)0.0056 (5)−0.0016 (5)−0.0067 (5)
C90.0273 (6)0.0284 (7)0.0227 (6)−0.0004 (5)−0.0051 (5)−0.0026 (5)
C100.0388 (7)0.0291 (7)0.0313 (6)0.0021 (6)−0.0057 (6)−0.0015 (5)
C110.0507 (9)0.0310 (8)0.0347 (7)−0.0078 (6)−0.0051 (6)0.0073 (6)
C120.0384 (8)0.0448 (9)0.0327 (7)−0.0111 (7)0.0021 (6)0.0063 (6)
C130.0298 (7)0.0379 (8)0.0275 (6)−0.0022 (6)0.0010 (5)−0.0008 (5)
C140.0264 (6)0.0277 (7)0.0215 (5)−0.0016 (5)−0.0027 (5)−0.0024 (5)
C150.0270 (6)0.0256 (7)0.0252 (6)0.0034 (5)0.0055 (5)−0.0028 (5)
C160.0334 (7)0.0245 (6)0.0252 (6)0.0009 (5)0.0059 (5)−0.0041 (5)
C170.0518 (10)0.0666 (12)0.0470 (9)0.0033 (8)−0.0109 (7)−0.0040 (8)
C180.0467 (9)0.0430 (9)0.0435 (8)−0.0033 (7)−0.0052 (7)0.0042 (7)
C190.0398 (8)0.0347 (8)0.0361 (7)−0.0062 (6)0.0026 (6)−0.0017 (6)
C200.0366 (7)0.0246 (7)0.0279 (6)−0.0004 (5)0.0066 (5)−0.0014 (5)
O20.0421 (5)0.0326 (5)0.0290 (5)−0.0029 (4)0.0045 (4)0.0035 (4)
N10.0402 (7)0.0304 (6)0.0291 (5)−0.0056 (5)0.0024 (5)0.0018 (5)
O30.0457 (6)0.0529 (7)0.0297 (5)−0.0205 (5)−0.0027 (4)0.0077 (4)
O10.0441 (5)0.0373 (5)0.0271 (4)−0.0124 (4)−0.0027 (4)0.0021 (4)
C1—C21.3924 (17)C12—H1210.956
C1—C61.4018 (17)C13—C141.3860 (17)
C1—C151.5133 (15)C13—H1310.965
C2—C31.3811 (18)C14—C151.5129 (17)
C2—H210.975C15—C161.5282 (17)
C3—C41.380 (2)C15—H1510.981
C3—H310.980C16—N11.3204 (16)
C4—C51.378 (2)C16—O11.2376 (14)
C4—H410.952C17—C181.504 (2)
C5—C61.4054 (17)C17—H1720.968
C5—H510.976C17—H1730.988
C6—C71.4591 (17)C17—H1710.971
C7—C81.3373 (18)C18—C191.5034 (19)
C7—H710.974C18—H1820.984
C8—C91.4601 (18)C18—H1810.980
C8—H810.977C19—C201.4956 (18)
C9—C101.3988 (18)C19—H1910.967
C9—C141.4026 (17)C19—H1920.954
C10—C111.3778 (19)C20—O21.2165 (14)
C10—H1010.950C20—O31.3114 (15)
C11—C121.378 (2)N1—H120.899 (14)
C11—H1110.946N1—H110.860 (14)
C12—C131.3848 (19)O3—H3110.880 (14)
C2—C1—C6119.25 (11)C14—C13—H131119.0
C2—C1—C15119.95 (11)C9—C14—C13119.42 (12)
C6—C1—C15120.79 (10)C9—C14—C15120.31 (11)
C1—C2—C3121.06 (12)C13—C14—C15120.22 (11)
C1—C2—H21118.6C1—C15—C14112.44 (10)
C3—C2—H21120.4C1—C15—C16115.54 (10)
C2—C3—C4120.03 (13)C14—C15—C16110.29 (10)
C2—C3—H31120.5C1—C15—H151107.5
C4—C3—H31119.5C14—C15—H151105.8
C3—C4—C5119.87 (12)C16—C15—H151104.4
C3—C4—H41119.9C15—C16—N1118.47 (11)
C5—C4—H41120.2C15—C16—O1119.24 (11)
C4—C5—C6121.01 (12)N1—C16—O1122.14 (12)
C4—C5—H51121.0C18—C17—H172110.8
C6—C5—H51118.0C18—C17—H173110.1
C5—C6—C1118.72 (11)H172—C17—H173108.7
C5—C6—C7118.30 (11)C18—C17—H171110.2
C1—C6—C7122.92 (11)H172—C17—H171109.7
C6—C7—C8127.14 (12)H173—C17—H171107.2
C6—C7—H71116.0C17—C18—C19113.39 (13)
C8—C7—H71116.7C17—C18—H182108.1
C7—C8—C9128.04 (12)C19—C18—H182108.9
C7—C8—H81117.0C17—C18—H181111.4
C9—C8—H81114.7C19—C18—H181105.9
C8—C9—C10118.27 (11)H182—C18—H181109.0
C8—C9—C14123.29 (11)C18—C19—C20115.46 (11)
C10—C9—C14118.45 (11)C18—C19—H191110.9
C9—C10—C11121.46 (13)C20—C19—H191107.3
C9—C10—H101118.2C18—C19—H192108.6
C11—C10—H101120.2C20—C19—H192106.7
C10—C11—C12119.67 (13)H191—C19—H192107.6
C10—C11—H111120.0C19—C20—O2123.28 (12)
C12—C11—H111120.3C19—C20—O3113.77 (11)
C11—C12—C13119.87 (13)O2—C20—O3122.95 (12)
C11—C12—H121120.4C16—N1—H12117.5 (10)
C13—C12—H121119.7C16—N1—H11123.2 (10)
C12—C13—C14121.09 (13)H12—N1—H11119.3 (14)
C12—C13—H131119.9C20—O3—H311111.5 (12)
C6—C1—C2—C30.48 (19)C14—C9—C10—C112.43 (18)
C15—C1—C2—C3−178.34 (12)C8—C9—C14—C13177.89 (11)
C2—C1—C6—C51.17 (17)C8—C9—C14—C15−4.73 (17)
C2—C1—C6—C7−176.25 (11)C10—C9—C14—C13−1.96 (17)
C15—C1—C6—C5180.00 (12)C10—C9—C14—C15175.42 (10)
C15—C1—C6—C72.57 (18)C9—C10—C11—C12−1.2 (2)
C2—C1—C15—C14114.81 (12)C10—C11—C12—C13−0.6 (2)
C2—C1—C15—C16−117.37 (12)C11—C12—C13—C141.0 (2)
C6—C1—C15—C14−63.99 (14)C12—C13—C14—C90.28 (18)
C6—C1—C15—C1663.83 (14)C12—C13—C14—C15−177.10 (11)
C1—C2—C3—C4−0.7 (2)C9—C14—C15—C164.61 (14)
C2—C3—C4—C5−0.8 (2)C9—C14—C15—C16−65.93 (13)
C3—C4—C5—C62.5 (2)C13—C14—C15—C1−118.03 (12)
C4—C5—C6—C1−2.67 (18)C13—C14—C15—C16111.43 (12)
C4—C5—C6—C7174.87 (12)C1—C15—C16—O1−156.56 (11)
C1—C6—C7—C836.0 (2)C1—C15—C16—N127.97 (15)
C5—C6—C7—C8−141.46 (14)C14—C15—C16—O1−27.68 (15)
C6—C7—C8—C9−1.9 (2)C14—C15—C16—N1156.85 (11)
C7—C8—C9—C10147.22 (13)C17—C18—C19—C20177.01 (13)
C7—C8—C9—C14−32.6 (2)C18—C19—C20—O2152.97 (13)
C8—C9—C10—C11−177.43 (12)C18—C19—C20—O3−27.50 (17)
D—H···AD—HH···AD···AD—H···A
N1—H11···O20.860 (14)2.348 (14)2.8761 (15)120.0 (10)
N1—H12···O2i0.898 (13)2.146 (13)3.0167 (15)163.2 (13)
O3—H311···O1i0.879 (17)1.698 (17)2.5658 (13)168.8 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H11⋯O20.860 (14)2.348 (14)2.8761 (15)120.0 (10)
N1—H12⋯O2i0.898 (13)2.146 (13)3.0167 (15)163.2 (13)
O3—H311⋯O1i0.879 (17)1.698 (17)2.5658 (13)168.8 (16)

Symmetry code: (i) .

  5 in total

1.  Indexing powder patterns in physical form screening: instrumentation and data quality.

Authors:  Alastair J Florence; Bruno Baumgartner; Chris Weston; Norman Shankland; Alan R Kennedy; Kenneth Shankland; William I F David
Journal:  J Pharm Sci       Date:  2003-09       Impact factor: 3.534

2.  ANTICONVULSANTS. I. DIBENZO(A,D)CYCLOHEPTADIENE-5-CARBOXAMIDE AND RELATED COMPOUNDS.

Authors:  M A DAVIS; S O WINTHROP; R A THOMAS; F HERR; M P CHAREST; R GAUDRY
Journal:  J Med Chem       Date:  1964-01       Impact factor: 7.446

3.  An automated parallel crystallisation search for predicted crystal structures and packing motifs of carbamazepine.

Authors:  Alastair J Florence; Andrea Johnston; Sarah L Price; Harriott Nowell; Alan R Kennedy; Norman Shankland
Journal:  J Pharm Sci       Date:  2006-09       Impact factor: 3.534

4.  An orthorhombic polymorph of 10,11-dihydrocarbamazepine.

Authors:  William T A Harrison; H S Yathirajan; H G Anilkumar
Journal:  Acta Crystallogr C       Date:  2006-04-13       Impact factor: 1.172

5.  Liquid chromatographic methods for assay of carbamazepine, 10,11-dihydrocarbamazepine, and related compounds in carbamazepine drug substance and tablets.

Authors:  T D Cyr; F Matsui; R W Sears; N M Curran; E G Lovering
Journal:  J Assoc Off Anal Chem       Date:  1987 Sep-Oct
  5 in total

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