Literature DB >> 21202902

3,6-Di-4-pyridyl-1,4-dihydro-1,2,4,5-tetra-zine.

Hai Wang, Hua-Ze Dong, Ning Lu, Hai-Bin Zhu.   

Abstract

The mol-ecule of the title compound, C(12)H(10)N(6), which is V-shaped due to the boat conformation of the dihydro-tetra-zine ring, has crystallographic C(2) symmetry. The dihedral angle between the planes of the two pyridine rings is 31.57 (3)°. Mol-ecules are linked by weak N-H⋯N and C-H⋯N hydrogen bonds, forming a two-dimensional polymeric structure.

Entities:  

Year:  2008        PMID: 21202902      PMCID: PMC2961757          DOI: 10.1107/S160053680801742X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bradford et al. (2004 ▶); Caira et al. (1976 ▶); Liou et al. (1996 ▶); Zachara et al. (2004 ▶); Rao & Hu (2005 ▶). For related literature on tetra­zines, see: Sauer (1996 ▶).

Experimental

Crystal data

C12H10N6 M = 238.26 Orthorhombic, a = 11.2862 (18) Å b = 14.481 (2) Å c = 6.8864 (12) Å V = 1125.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.50 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.955, T max = 0.991 4214 measured reflections 1105 independent reflections 938 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.128 S = 1.08 1105 reflections 86 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SMART; data reduction: SAINT (Bruker, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680801742X/gk2149sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680801742X/gk2149Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N6F000 = 496
Mr = 238.26Dx = 1.406 Mg m3
Orthorhombic, PccnMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 820 reflections
a = 11.2862 (18) Åθ = 2.5–28.0º
b = 14.481 (2) ŵ = 0.09 mm1
c = 6.8864 (12) ÅT = 293 (2) K
V = 1125.4 (3) Å3Block, red
Z = 40.50 × 0.10 × 0.10 mm
Bruker SMART CCD area-detector diffractometer1105 independent reflections
Radiation source: fine-focus sealed tube938 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.032
Detector resolution: 0 pixels mm-1θmax = 26.0º
T = 293(2) Kθmin = 2.8º
φ and ω scansh = −13→10
Absorption correction: multi-scan(SADABS; Bruker, 2000)k = −17→17
Tmin = 0.955, Tmax = 0.991l = −3→8
4214 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.128  w = 1/[σ2(Fo2) + (0.0618P)2 + 0.3052P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1105 reflectionsΔρmax = 0.20 e Å3
86 parametersΔρmin = −0.14 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.56160 (17)0.17370 (13)0.1811 (4)0.0589 (7)
H1A0.57690.23510.15000.071*
C20.65246 (19)0.11530 (16)0.2327 (4)0.0683 (8)
H2A0.72860.13970.23700.082*
C30.52968 (17)−0.00510 (13)0.2686 (3)0.0463 (5)
H3A0.5172−0.06710.29710.056*
C40.43215 (16)0.04780 (12)0.2202 (3)0.0390 (5)
H4A0.35710.02140.21760.047*
C50.44678 (15)0.13961 (11)0.1762 (3)0.0322 (4)
C60.34693 (13)0.20078 (11)0.1238 (2)0.0296 (4)
N10.63928 (15)0.02634 (11)0.2770 (3)0.0526 (5)
N20.36287 (11)0.28776 (9)0.1283 (2)0.0331 (4)
N30.26087 (12)0.33789 (10)0.0671 (2)0.0332 (4)
H3B0.2708 (17)0.3931 (14)0.097 (3)0.047 (6)*
U11U22U33U12U13U23
C10.0310 (11)0.0379 (11)0.108 (2)−0.0006 (8)−0.0039 (11)0.0119 (11)
C20.0282 (11)0.0536 (13)0.123 (2)0.0004 (9)−0.0073 (12)0.0094 (14)
C30.0396 (13)0.0355 (10)0.0639 (14)0.0077 (8)−0.0012 (9)0.0042 (9)
C40.0294 (10)0.0324 (9)0.0553 (12)0.0011 (7)−0.0008 (8)0.0023 (8)
C50.0273 (9)0.0314 (9)0.0379 (9)0.0025 (7)0.0029 (7)−0.0026 (7)
C60.0255 (9)0.0272 (8)0.0360 (9)−0.0013 (6)0.0027 (7)−0.0009 (7)
N10.0357 (10)0.0463 (10)0.0756 (13)0.0111 (7)−0.0021 (8)0.0028 (9)
N20.0238 (8)0.0283 (7)0.0471 (9)0.0007 (6)0.0036 (6)0.0006 (6)
N30.0270 (8)0.0239 (7)0.0487 (9)0.0011 (6)0.0019 (6)0.0030 (6)
C1—C21.376 (3)C4—C51.374 (2)
C1—C51.387 (2)C4—H4A0.9300
C1—H1A0.9300C5—C61.478 (2)
C2—N11.332 (3)C6—N21.273 (2)
C2—H2A0.9300C6—N3i1.395 (2)
C3—N11.319 (2)N2—N31.4249 (18)
C3—C41.382 (3)N3—C6i1.395 (2)
C3—H3A0.9300N3—H3B0.83 (2)
C2—C1—C5118.94 (18)C4—C5—C1116.82 (16)
C2—C1—H1A120.5C4—C5—C6122.84 (15)
C5—C1—H1A120.5C1—C5—C6120.33 (16)
N1—C2—C1124.8 (2)N2—C6—N3i121.83 (14)
N1—C2—H2A117.6N2—C6—C5118.64 (15)
C1—C2—H2A117.6N3i—C6—C5119.51 (14)
N1—C3—C4124.48 (18)C3—N1—C2115.36 (17)
N1—C3—H3A117.8C6—N2—N3112.51 (13)
C4—C3—H3A117.8C6i—N3—N2114.66 (12)
C5—C4—C3119.61 (17)C6i—N3—H3B115.7 (14)
C5—C4—H4A120.2N2—N3—H3B107.9 (14)
C3—C4—H4A120.2
D—H···AD—HH···AD···AD—H···A
N3—H3B···N1ii0.83 (2)2.35 (2)3.142 (2)159.8 (18)
C3—H3A···N2iii0.932.553.312 (2)139
C4—H4A···N1iv0.932.553.475 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯N1i0.83 (2)2.35 (2)3.142 (2)159.8 (18)
C3—H3A⋯N2ii0.932.553.312 (2)139
C4—H4A⋯N1iii0.932.553.475 (3)171

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrogen-bonding patterns in two structural isomers of 3,6-bis(2-chlorophenyl)-1,4-dihydro-1,2,4,5-tetrazine.

Authors:  Janusz Zachara; Izabela Madura; Marek Włostowski
Journal:  Acta Crystallogr C       Date:  2003-12-06       Impact factor: 1.172

  2 in total

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