| Literature DB >> 21202899 |
Shang Shan1, Yu-Liang Tian, Shan-Heng Wang, Wen-Long Wang, Ying-Li Xu.
Abstract
In the title compound, C(12)H(11)N(5)O(2), the mol-ecule adopts an E configuration, with the benzene and pyrazine rings located on opposite sides of the N=C double bond. The face-to-face separations of 3.413 (14) and 3.430 (8) Å, respectively between parallel benzene rings and between pyrazine rings indicate the existence of π-π stacking between adjacent mol-ecules. The crystal structure also contains N-H⋯N and C-H⋯O hydrogen bonding.Entities:
Year: 2008 PMID: 21202899 PMCID: PMC2961878 DOI: 10.1107/S1600536808017479
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H11N5O2 | |
| Monoclinic, | Melting point: 498 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 4236 reflections | |
| θ = 3.2–25.0º | |
| µ = 0.10 mm−1 | |
| β = 98.564 (2)º | |
| Prism, yellow | |
| 0.40 × 0.38 × 0.26 mm |
| Rigaku R-AXIS RAPID IP diffractometer | 2747 independent reflections |
| Radiation source: fine-focus sealed tube | 1446 reflections with |
| Monochromator: graphite | |
| Detector resolution: 10.00 pixels mm-1 | θmax = 27.4º |
| θmin = 3.0º | |
| ω scans | |
| Absorption correction: none | |
| 11633 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.20 e Å−3 | |
| 2747 reflections | Δρmin = −0.19 e Å−3 |
| 174 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.024 (3) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.9003 (3) | 0.68785 (16) | 0.3418 (2) | 0.0684 (6) | |
| N2 | 0.6332 (2) | 0.36085 (12) | 0.57394 (13) | 0.0448 (4) | |
| H2N | 0.6470 | 0.3652 | 0.6496 | 0.054* | |
| N3 | 0.5365 (2) | 0.28334 (12) | 0.51838 (13) | 0.0425 (4) | |
| N4 | 0.3197 (2) | 0.04376 (14) | 0.55830 (14) | 0.0518 (5) | |
| N5 | 0.2175 (2) | 0.07812 (15) | 0.33069 (14) | 0.0571 (5) | |
| O1 | 0.9806 (3) | 0.75846 (16) | 0.3955 (2) | 0.1041 (8) | |
| O2 | 0.8729 (3) | 0.68826 (16) | 0.2397 (2) | 0.1012 (8) | |
| C1 | 0.6976 (2) | 0.43994 (15) | 0.51344 (16) | 0.0412 (5) | |
| C2 | 0.7855 (3) | 0.52394 (16) | 0.57162 (17) | 0.0490 (5) | |
| H2 | 0.7989 | 0.5251 | 0.6490 | 0.059* | |
| C3 | 0.8519 (3) | 0.60439 (16) | 0.51558 (18) | 0.0521 (5) | |
| H3 | 0.9109 | 0.6601 | 0.5544 | 0.062* | |
| C4 | 0.8306 (3) | 0.60198 (15) | 0.40117 (18) | 0.0488 (5) | |
| C5 | 0.7461 (3) | 0.51920 (17) | 0.34168 (17) | 0.0513 (5) | |
| H5 | 0.7339 | 0.5187 | 0.2644 | 0.062* | |
| C6 | 0.6803 (3) | 0.43744 (17) | 0.39758 (16) | 0.0482 (5) | |
| H6 | 0.6246 | 0.3809 | 0.3583 | 0.058* | |
| C7 | 0.4778 (2) | 0.20837 (14) | 0.57459 (15) | 0.0408 (5) | |
| C8 | 0.5120 (3) | 0.19727 (18) | 0.69835 (17) | 0.0593 (6) | |
| H8A | 0.6317 | 0.1939 | 0.7222 | 0.089* | |
| H8B | 0.4602 | 0.1331 | 0.7202 | 0.089* | |
| H8C | 0.4663 | 0.2578 | 0.7322 | 0.089* | |
| C9 | 0.3700 (2) | 0.13023 (15) | 0.50718 (15) | 0.0408 (5) | |
| C10 | 0.3179 (3) | 0.14575 (16) | 0.39353 (16) | 0.0496 (5) | |
| H10 | 0.3553 | 0.2063 | 0.3602 | 0.059* | |
| C11 | 0.1699 (3) | −0.00860 (18) | 0.38283 (19) | 0.0569 (6) | |
| H11 | 0.1002 | −0.0587 | 0.3424 | 0.068* | |
| C12 | 0.2214 (3) | −0.02519 (17) | 0.49398 (19) | 0.0554 (6) | |
| H12 | 0.1865 | −0.0871 | 0.5263 | 0.067* |
| N1 | 0.0742 (15) | 0.0486 (11) | 0.0895 (17) | 0.0037 (10) | 0.0352 (12) | 0.0135 (11) |
| N2 | 0.0566 (11) | 0.0430 (9) | 0.0341 (8) | −0.0036 (8) | 0.0039 (7) | −0.0005 (7) |
| N3 | 0.0478 (10) | 0.0391 (8) | 0.0397 (9) | 0.0001 (7) | 0.0036 (7) | −0.0009 (7) |
| N4 | 0.0623 (12) | 0.0469 (10) | 0.0465 (10) | −0.0033 (8) | 0.0094 (8) | 0.0044 (8) |
| N5 | 0.0678 (13) | 0.0578 (11) | 0.0435 (10) | −0.0075 (9) | 0.0012 (9) | −0.0042 (9) |
| O1 | 0.1140 (18) | 0.0645 (12) | 0.137 (2) | −0.0350 (12) | 0.0270 (15) | 0.0119 (13) |
| O2 | 0.146 (2) | 0.0841 (14) | 0.0860 (15) | −0.0086 (13) | 0.0569 (14) | 0.0232 (12) |
| C1 | 0.0454 (11) | 0.0388 (10) | 0.0393 (10) | 0.0033 (8) | 0.0064 (8) | −0.0002 (8) |
| C2 | 0.0588 (13) | 0.0456 (11) | 0.0419 (11) | −0.0015 (10) | 0.0050 (9) | −0.0038 (9) |
| C3 | 0.0542 (13) | 0.0412 (11) | 0.0609 (14) | −0.0029 (9) | 0.0087 (10) | −0.0062 (10) |
| C4 | 0.0517 (12) | 0.0405 (10) | 0.0577 (13) | 0.0055 (9) | 0.0198 (10) | 0.0075 (10) |
| C5 | 0.0610 (14) | 0.0527 (12) | 0.0414 (11) | 0.0029 (10) | 0.0117 (10) | 0.0022 (10) |
| C6 | 0.0569 (13) | 0.0471 (11) | 0.0411 (11) | −0.0013 (10) | 0.0088 (9) | −0.0023 (9) |
| C7 | 0.0469 (12) | 0.0381 (10) | 0.0370 (10) | 0.0050 (8) | 0.0046 (8) | 0.0027 (8) |
| C8 | 0.0780 (17) | 0.0573 (13) | 0.0396 (12) | −0.0086 (12) | −0.0009 (11) | 0.0065 (10) |
| C9 | 0.0459 (11) | 0.0391 (10) | 0.0379 (10) | 0.0036 (8) | 0.0079 (8) | 0.0035 (8) |
| C10 | 0.0605 (14) | 0.0483 (11) | 0.0394 (11) | −0.0045 (10) | 0.0060 (10) | 0.0024 (9) |
| C11 | 0.0619 (15) | 0.0520 (13) | 0.0561 (13) | −0.0091 (11) | 0.0064 (11) | −0.0063 (11) |
| C12 | 0.0634 (14) | 0.0473 (12) | 0.0568 (13) | −0.0107 (10) | 0.0127 (11) | 0.0019 (11) |
| N1—O1 | 1.223 (3) | C3—H3 | 0.9300 |
| N1—O2 | 1.226 (3) | C4—C5 | 1.381 (3) |
| N1—C4 | 1.452 (3) | C5—C6 | 1.376 (3) |
| N2—N3 | 1.357 (2) | C5—H5 | 0.9300 |
| N2—C1 | 1.378 (2) | C6—H6 | 0.9300 |
| N2—H2N | 0.9106 | C7—C9 | 1.470 (3) |
| N3—C7 | 1.290 (2) | C7—C8 | 1.494 (3) |
| N4—C12 | 1.339 (3) | C8—H8A | 0.9600 |
| N4—C9 | 1.339 (2) | C8—H8B | 0.9600 |
| N5—C10 | 1.328 (3) | C8—H8C | 0.9600 |
| N5—C11 | 1.340 (3) | C9—C10 | 1.395 (3) |
| C1—C6 | 1.394 (3) | C10—H10 | 0.9300 |
| C1—C2 | 1.397 (3) | C11—C12 | 1.368 (3) |
| C2—C3 | 1.367 (3) | C11—H11 | 0.9300 |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.375 (3) | ||
| O1—N1—O2 | 122.5 (2) | C5—C6—C1 | 119.6 (2) |
| O1—N1—C4 | 118.7 (2) | C5—C6—H6 | 120.2 |
| O2—N1—C4 | 118.8 (2) | C1—C6—H6 | 120.2 |
| N3—N2—C1 | 118.65 (15) | N3—C7—C9 | 114.78 (16) |
| N3—N2—H2N | 121.3 | N3—C7—C8 | 125.00 (18) |
| C1—N2—H2N | 119.8 | C9—C7—C8 | 120.23 (17) |
| C7—N3—N2 | 118.88 (16) | C7—C8—H8A | 109.5 |
| C12—N4—C9 | 116.19 (18) | C7—C8—H8B | 109.5 |
| C10—N5—C11 | 115.78 (18) | H8A—C8—H8B | 109.5 |
| N2—C1—C6 | 122.25 (18) | C7—C8—H8C | 109.5 |
| N2—C1—C2 | 118.10 (17) | H8A—C8—H8C | 109.5 |
| C6—C1—C2 | 119.64 (19) | H8B—C8—H8C | 109.5 |
| C3—C2—C1 | 120.42 (19) | N4—C9—C10 | 120.35 (18) |
| C3—C2—H2 | 119.8 | N4—C9—C7 | 118.11 (16) |
| C1—C2—H2 | 119.8 | C10—C9—C7 | 121.53 (17) |
| C2—C3—C4 | 119.2 (2) | N5—C10—C9 | 123.13 (19) |
| C2—C3—H3 | 120.4 | N5—C10—H10 | 118.4 |
| C4—C3—H3 | 120.4 | C9—C10—H10 | 118.4 |
| C3—C4—C5 | 121.53 (19) | N5—C11—C12 | 121.6 (2) |
| C3—C4—N1 | 119.1 (2) | N5—C11—H11 | 119.2 |
| C5—C4—N1 | 119.3 (2) | C12—C11—H11 | 119.2 |
| C6—C5—C4 | 119.56 (19) | N4—C12—C11 | 122.9 (2) |
| C6—C5—H5 | 120.2 | N4—C12—H12 | 118.6 |
| C4—C5—H5 | 120.2 | C11—C12—H12 | 118.6 |
| H··· | ||||
| N2—H2N···N5i | 0.91 | 2.30 | 3.185 (2) | 164 |
| C11—H11···O1ii | 0.93 | 2.60 | 3.300 (3) | 133 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.91 | 2.30 | 3.185 (2) | 164 |
| C11—H11⋯O1ii | 0.93 | 2.60 | 3.300 (3) | 133 |
Symmetry codes: (i) ; (ii) .