Literature DB >> 21202899

(E)-2-Acetyl-pyrazine 4-nitro-phenyl-hydrazone.

Shang Shan1, Yu-Liang Tian, Shan-Heng Wang, Wen-Long Wang, Ying-Li Xu.   

Abstract

In the title compound, C(12)H(11)N(5)O(2), the mol-ecule adopts an E configuration, with the benzene and pyrazine rings located on opposite sides of the N=C double bond. The face-to-face separations of 3.413 (14) and 3.430 (8) Å, respectively between parallel benzene rings and between pyrazine rings indicate the existence of π-π stacking between adjacent mol-ecules. The crystal structure also contains N-H⋯N and C-H⋯O hydrogen bonding.

Entities:  

Year:  2008        PMID: 21202899      PMCID: PMC2961878          DOI: 10.1107/S1600536808017479

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Okabe et al. (1993 ▶); Hu et al. (2001 ▶); Chen et al. (2007 ▶). For a related structure, see: Shan et al. (2008 ▶).

Experimental

Crystal data

C12H11N5O2 M = 257.26 Monoclinic, a = 8.0101 (6) Å b = 12.5154 (11) Å c = 12.1506 (12) Å β = 98.564 (2)° V = 1204.51 (18) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 (2) K 0.40 × 0.38 × 0.26 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: none 11633 measured reflections 2747 independent reflections 1446 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.149 S = 1.08 2747 reflections 174 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808017479/sg2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808017479/sg2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N5O2F000 = 536
Mr = 257.26Dx = 1.419 Mg m3
Monoclinic, P21/nMelting point: 498 K
Hall symbol: -P 2ynMo Kα radiation λ = 0.71069 Å
a = 8.0101 (6) ÅCell parameters from 4236 reflections
b = 12.5154 (11) Åθ = 3.2–25.0º
c = 12.1506 (12) ŵ = 0.10 mm1
β = 98.564 (2)ºT = 295 (2) K
V = 1204.51 (18) Å3Prism, yellow
Z = 40.40 × 0.38 × 0.26 mm
Rigaku R-AXIS RAPID IP diffractometer2747 independent reflections
Radiation source: fine-focus sealed tube1446 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.033
Detector resolution: 10.00 pixels mm-1θmax = 27.4º
T = 295(2) Kθmin = 3.0º
ω scansh = −10→10
Absorption correction: nonek = −16→16
11633 measured reflectionsl = −15→15
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.042  w = 1/[σ2(Fo2) + (0.0615P)2 + 0.2787P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.149(Δ/σ)max = 0.001
S = 1.09Δρmax = 0.20 e Å3
2747 reflectionsΔρmin = −0.19 e Å3
174 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.024 (3)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.9003 (3)0.68785 (16)0.3418 (2)0.0684 (6)
N20.6332 (2)0.36085 (12)0.57394 (13)0.0448 (4)
H2N0.64700.36520.64960.054*
N30.5365 (2)0.28334 (12)0.51838 (13)0.0425 (4)
N40.3197 (2)0.04376 (14)0.55830 (14)0.0518 (5)
N50.2175 (2)0.07812 (15)0.33069 (14)0.0571 (5)
O10.9806 (3)0.75846 (16)0.3955 (2)0.1041 (8)
O20.8729 (3)0.68826 (16)0.2397 (2)0.1012 (8)
C10.6976 (2)0.43994 (15)0.51344 (16)0.0412 (5)
C20.7855 (3)0.52394 (16)0.57162 (17)0.0490 (5)
H20.79890.52510.64900.059*
C30.8519 (3)0.60439 (16)0.51558 (18)0.0521 (5)
H30.91090.66010.55440.062*
C40.8306 (3)0.60198 (15)0.40117 (18)0.0488 (5)
C50.7461 (3)0.51920 (17)0.34168 (17)0.0513 (5)
H50.73390.51870.26440.062*
C60.6803 (3)0.43744 (17)0.39758 (16)0.0482 (5)
H60.62460.38090.35830.058*
C70.4778 (2)0.20837 (14)0.57459 (15)0.0408 (5)
C80.5120 (3)0.19727 (18)0.69835 (17)0.0593 (6)
H8A0.63170.19390.72220.089*
H8B0.46020.13310.72020.089*
H8C0.46630.25780.73220.089*
C90.3700 (2)0.13023 (15)0.50718 (15)0.0408 (5)
C100.3179 (3)0.14575 (16)0.39353 (16)0.0496 (5)
H100.35530.20630.36020.059*
C110.1699 (3)−0.00860 (18)0.38283 (19)0.0569 (6)
H110.1002−0.05870.34240.068*
C120.2214 (3)−0.02519 (17)0.49398 (19)0.0554 (6)
H120.1865−0.08710.52630.067*
U11U22U33U12U13U23
N10.0742 (15)0.0486 (11)0.0895 (17)0.0037 (10)0.0352 (12)0.0135 (11)
N20.0566 (11)0.0430 (9)0.0341 (8)−0.0036 (8)0.0039 (7)−0.0005 (7)
N30.0478 (10)0.0391 (8)0.0397 (9)0.0001 (7)0.0036 (7)−0.0009 (7)
N40.0623 (12)0.0469 (10)0.0465 (10)−0.0033 (8)0.0094 (8)0.0044 (8)
N50.0678 (13)0.0578 (11)0.0435 (10)−0.0075 (9)0.0012 (9)−0.0042 (9)
O10.1140 (18)0.0645 (12)0.137 (2)−0.0350 (12)0.0270 (15)0.0119 (13)
O20.146 (2)0.0841 (14)0.0860 (15)−0.0086 (13)0.0569 (14)0.0232 (12)
C10.0454 (11)0.0388 (10)0.0393 (10)0.0033 (8)0.0064 (8)−0.0002 (8)
C20.0588 (13)0.0456 (11)0.0419 (11)−0.0015 (10)0.0050 (9)−0.0038 (9)
C30.0542 (13)0.0412 (11)0.0609 (14)−0.0029 (9)0.0087 (10)−0.0062 (10)
C40.0517 (12)0.0405 (10)0.0577 (13)0.0055 (9)0.0198 (10)0.0075 (10)
C50.0610 (14)0.0527 (12)0.0414 (11)0.0029 (10)0.0117 (10)0.0022 (10)
C60.0569 (13)0.0471 (11)0.0411 (11)−0.0013 (10)0.0088 (9)−0.0023 (9)
C70.0469 (12)0.0381 (10)0.0370 (10)0.0050 (8)0.0046 (8)0.0027 (8)
C80.0780 (17)0.0573 (13)0.0396 (12)−0.0086 (12)−0.0009 (11)0.0065 (10)
C90.0459 (11)0.0391 (10)0.0379 (10)0.0036 (8)0.0079 (8)0.0035 (8)
C100.0605 (14)0.0483 (11)0.0394 (11)−0.0045 (10)0.0060 (10)0.0024 (9)
C110.0619 (15)0.0520 (13)0.0561 (13)−0.0091 (11)0.0064 (11)−0.0063 (11)
C120.0634 (14)0.0473 (12)0.0568 (13)−0.0107 (10)0.0127 (11)0.0019 (11)
N1—O11.223 (3)C3—H30.9300
N1—O21.226 (3)C4—C51.381 (3)
N1—C41.452 (3)C5—C61.376 (3)
N2—N31.357 (2)C5—H50.9300
N2—C11.378 (2)C6—H60.9300
N2—H2N0.9106C7—C91.470 (3)
N3—C71.290 (2)C7—C81.494 (3)
N4—C121.339 (3)C8—H8A0.9600
N4—C91.339 (2)C8—H8B0.9600
N5—C101.328 (3)C8—H8C0.9600
N5—C111.340 (3)C9—C101.395 (3)
C1—C61.394 (3)C10—H100.9300
C1—C21.397 (3)C11—C121.368 (3)
C2—C31.367 (3)C11—H110.9300
C2—H20.9300C12—H120.9300
C3—C41.375 (3)
O1—N1—O2122.5 (2)C5—C6—C1119.6 (2)
O1—N1—C4118.7 (2)C5—C6—H6120.2
O2—N1—C4118.8 (2)C1—C6—H6120.2
N3—N2—C1118.65 (15)N3—C7—C9114.78 (16)
N3—N2—H2N121.3N3—C7—C8125.00 (18)
C1—N2—H2N119.8C9—C7—C8120.23 (17)
C7—N3—N2118.88 (16)C7—C8—H8A109.5
C12—N4—C9116.19 (18)C7—C8—H8B109.5
C10—N5—C11115.78 (18)H8A—C8—H8B109.5
N2—C1—C6122.25 (18)C7—C8—H8C109.5
N2—C1—C2118.10 (17)H8A—C8—H8C109.5
C6—C1—C2119.64 (19)H8B—C8—H8C109.5
C3—C2—C1120.42 (19)N4—C9—C10120.35 (18)
C3—C2—H2119.8N4—C9—C7118.11 (16)
C1—C2—H2119.8C10—C9—C7121.53 (17)
C2—C3—C4119.2 (2)N5—C10—C9123.13 (19)
C2—C3—H3120.4N5—C10—H10118.4
C4—C3—H3120.4C9—C10—H10118.4
C3—C4—C5121.53 (19)N5—C11—C12121.6 (2)
C3—C4—N1119.1 (2)N5—C11—H11119.2
C5—C4—N1119.3 (2)C12—C11—H11119.2
C6—C5—C4119.56 (19)N4—C12—C11122.9 (2)
C6—C5—H5120.2N4—C12—H12118.6
C4—C5—H5120.2C11—C12—H12118.6
D—H···AD—HH···AD···AD—H···A
N2—H2N···N5i0.912.303.185 (2)164
C11—H11···O1ii0.932.603.300 (3)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯N5i0.912.303.185 (2)164
C11—H11⋯O1ii0.932.603.300 (3)133

Symmetry codes: (i) ; (ii) .

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