| Literature DB >> 21202853 |
Andrea Johnston, Alastair J Florence, Francesca J A Fabbiani, Kenneth Shankland, Colin T Bedford, Julie Bardin.
Abstract
Cytenamide forms a 1:1 solvate with trifluoro-acetic acid (systematic name: 5H-dibenzo[a,d]cyclo-hepta-triene-5-carboxamide trifluoro-acetic acid solvate), C(16)H(13)NO·C(2)HF(3)O(2). The compound crystallizes with one mol-ecule of cytenamide and one of trifluoro-acetic acid in the asymmetric unit; these are linked by O-H⋯O and N-H⋯O hydrogen bonds to form an R(2) (2)(8) motif. The trifluoro-methyl group of the solvent mol-ecule displays rotational disorder over two sites, with site-occupancy factors of 0.964 (4) and 0.036 (4).Entities:
Year: 2008 PMID: 21202853 PMCID: PMC2961719 DOI: 10.1107/S1600536808016577
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H13NO·C2HF3O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1137 reflections |
| θ = 3–25º | |
| µ = 0.12 mm−1 | |
| β = 101.932 (8)º | Block, colourless |
| 0.16 × 0.13 × 0.08 mm | |
| Oxford Diffraction Gemini S diffractometer | 2995 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1423 reflections with |
| Monochromator: graphite | |
| Detector resolution: 15.9745 pixels mm-1 | θmax = 25.5º |
| θmin = 3.1º | |
| φ and ω scans | |
| Absorption correction: multi-scan(ABSPACK/CrysAlis RED; Oxford Diffraction, 2006) | |
| 10796 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters not refined | |
| Method = Modified Sheldrick
| |
| (Δ/σ)max = 0.0004 | |
| 2984 reflections | Δρmax = 0.73 e Å−3 |
| 236 parameters | Δρmin = −0.60 e Å−3 |
| 24 restraints | Extinction correction: None |
| Occ. (<1) | |||||
| C1 | 0.6284 (3) | 0.6720 (7) | 0.3296 (2) | 0.0461 | |
| C2 | 0.5488 (4) | 0.4854 (7) | 0.31163 (18) | 0.0431 | |
| C3 | 0.4806 (3) | 0.4971 (7) | 0.24379 (18) | 0.0380 | |
| C4 | 0.4965 (4) | 0.3481 (7) | 0.1996 (2) | 0.0507 | |
| C5 | 0.4406 (4) | 0.3618 (8) | 0.1366 (2) | 0.0578 | |
| C6 | 0.3726 (4) | 0.5332 (9) | 0.1180 (2) | 0.0576 | |
| C7 | 0.3553 (4) | 0.6826 (8) | 0.16104 (19) | 0.0519 | |
| C8 | 0.4077 (3) | 0.6646 (7) | 0.22567 (17) | 0.0393 | |
| C9 | 0.3794 (4) | 0.8214 (7) | 0.2691 (2) | 0.0475 | |
| C10 | 0.3773 (3) | 0.7968 (7) | 0.33147 (19) | 0.0456 | |
| C11 | 0.4028 (3) | 0.6095 (7) | 0.37105 (18) | 0.0369 | |
| C12 | 0.3488 (4) | 0.5854 (7) | 0.42250 (19) | 0.0470 | |
| C13 | 0.3646 (4) | 0.4094 (8) | 0.45999 (18) | 0.0515 | |
| C14 | 0.4337 (4) | 0.2524 (8) | 0.4474 (2) | 0.0570 | |
| C15 | 0.4912 (4) | 0.2755 (7) | 0.3988 (2) | 0.0497 | |
| C16 | 0.4774 (3) | 0.4536 (7) | 0.36104 (17) | 0.0374 | |
| C17 | 0.8909 (4) | 0.3112 (8) | 0.4387 (2) | 0.0572 | |
| C18 | 0.8197 (3) | 0.1386 (7) | 0.4008 (2) | 0.0461 | |
| N1 | 0.6679 (3) | 0.7697 (6) | 0.28446 (15) | 0.0533 | |
| O1 | 0.7936 (2) | 0.1490 (5) | 0.34338 (13) | 0.0564 | |
| O2 | 0.6593 (2) | 0.7215 (5) | 0.38684 (12) | 0.0591 | |
| O3 | 0.7904 (3) | −0.0019 (5) | 0.43735 (12) | 0.0618 | |
| F1 | 0.9217 (4) | 0.4524 (6) | 0.40116 (15) | 0.1040 | 0.964 (4) |
| F2 | 0.9828 (2) | 0.2331 (5) | 0.47540 (13) | 0.0714 | 0.964 (4) |
| F3 | 0.8361 (3) | 0.4082 (5) | 0.47792 (16) | 0.0845 | 0.964 (4) |
| F4 | 0.846 (3) | 0.502 (2) | 0.429 (3) | 0.0800* | 0.036 (4) |
| F5 | 0.992 (2) | 0.330 (8) | 0.425 (3) | 0.0800* | 0.036 (4) |
| F6 | 0.910 (5) | 0.282 (6) | 0.5010 (4) | 0.0800* | 0.036 (4) |
| H11 | 0.6461 | 0.7332 | 0.2450 | 0.0619* | |
| H12 | 0.7150 | 0.8730 | 0.2945 | 0.0619* | |
| H21 | 0.5969 | 0.3601 | 0.3139 | 0.0495* | |
| H41 | 0.5449 | 0.2331 | 0.2125 | 0.0596* | |
| H51 | 0.4499 | 0.2559 | 0.1077 | 0.0680* | |
| H61 | 0.3386 | 0.5487 | 0.0754 | 0.0651* | |
| H71 | 0.3068 | 0.7953 | 0.1473 | 0.0581* | |
| H91 | 0.3579 | 0.9563 | 0.2521 | 0.0539* | |
| H101 | 0.3556 | 0.9169 | 0.3516 | 0.0541* | |
| H121 | 0.3022 | 0.6959 | 0.4312 | 0.0539* | |
| H131 | 0.3278 | 0.3947 | 0.4943 | 0.0619* | |
| H141 | 0.4423 | 0.1260 | 0.4713 | 0.0647* | |
| H151 | 0.5414 | 0.1676 | 0.3914 | 0.0557* | |
| H5 | 0.7404 | −0.0935 | 0.4169 | 0.0888* |
| C1 | 0.033 (2) | 0.065 (3) | 0.040 (3) | −0.002 (2) | 0.005 (2) | 0.003 (2) |
| C2 | 0.036 (2) | 0.047 (3) | 0.044 (2) | 0.008 (2) | 0.002 (2) | −0.006 (2) |
| C3 | 0.028 (2) | 0.046 (3) | 0.041 (2) | −0.007 (2) | 0.0095 (19) | −0.007 (2) |
| C4 | 0.044 (3) | 0.056 (3) | 0.052 (3) | 0.000 (2) | 0.011 (2) | −0.009 (2) |
| C5 | 0.056 (3) | 0.072 (4) | 0.048 (3) | −0.012 (3) | 0.015 (2) | −0.021 (3) |
| C6 | 0.053 (3) | 0.081 (4) | 0.036 (3) | −0.011 (3) | 0.002 (2) | −0.003 (3) |
| C7 | 0.044 (3) | 0.070 (3) | 0.041 (3) | −0.004 (2) | 0.004 (2) | 0.002 (3) |
| C8 | 0.030 (2) | 0.049 (3) | 0.038 (2) | −0.003 (2) | 0.0052 (19) | 0.000 (2) |
| C9 | 0.047 (3) | 0.041 (3) | 0.055 (3) | 0.002 (2) | 0.009 (2) | −0.001 (2) |
| C10 | 0.047 (3) | 0.045 (3) | 0.047 (3) | 0.003 (2) | 0.013 (2) | −0.006 (2) |
| C11 | 0.036 (2) | 0.037 (3) | 0.035 (2) | −0.006 (2) | 0.0022 (19) | −0.006 (2) |
| C12 | 0.047 (3) | 0.056 (3) | 0.038 (2) | −0.005 (2) | 0.008 (2) | −0.011 (2) |
| C13 | 0.050 (3) | 0.069 (4) | 0.035 (2) | −0.014 (3) | 0.007 (2) | 0.006 (3) |
| C14 | 0.058 (3) | 0.057 (3) | 0.050 (3) | −0.010 (3) | −0.004 (2) | 0.011 (3) |
| C15 | 0.043 (3) | 0.055 (3) | 0.048 (3) | −0.003 (2) | 0.001 (2) | 0.002 (2) |
| C16 | 0.040 (3) | 0.036 (3) | 0.032 (2) | −0.002 (2) | −0.0011 (19) | −0.003 (2) |
| C17 | 0.054 (3) | 0.064 (4) | 0.055 (3) | −0.003 (3) | 0.014 (3) | −0.002 (3) |
| C18 | 0.034 (3) | 0.060 (3) | 0.044 (3) | 0.002 (2) | 0.007 (2) | 0.008 (3) |
| N1 | 0.043 (2) | 0.078 (3) | 0.038 (2) | −0.017 (2) | 0.0045 (17) | −0.009 (2) |
| O1 | 0.0488 (19) | 0.082 (2) | 0.0375 (17) | −0.0082 (17) | 0.0064 (14) | 0.0091 (17) |
| O2 | 0.054 (2) | 0.090 (3) | 0.0300 (17) | −0.0283 (18) | 0.0024 (14) | −0.0002 (16) |
| O3 | 0.060 (2) | 0.085 (2) | 0.0362 (17) | −0.0297 (19) | −0.0009 (15) | 0.0067 (17) |
| F1 | 0.132 (3) | 0.101 (3) | 0.074 (2) | −0.059 (3) | 0.008 (2) | 0.020 (2) |
| F2 | 0.0448 (18) | 0.091 (2) | 0.0715 (19) | −0.0066 (16) | −0.0045 (14) | −0.0160 (17) |
| F3 | 0.075 (2) | 0.086 (2) | 0.095 (2) | 0.0090 (19) | 0.0230 (19) | −0.027 (2) |
| C1—C2 | 1.525 (6) | C11—C16 | 1.386 (5) |
| C1—N1 | 1.321 (5) | C12—C13 | 1.363 (6) |
| C1—O2 | 1.247 (4) | C12—H121 | 0.942 |
| C2—C3 | 1.521 (5) | C13—C14 | 1.364 (6) |
| C2—C16 | 1.517 (6) | C13—H131 | 0.942 |
| C2—H21 | 0.980 | C14—C15 | 1.378 (6) |
| C3—C4 | 1.379 (6) | C14—H141 | 0.945 |
| C3—C8 | 1.384 (5) | C15—C16 | 1.376 (5) |
| C4—C5 | 1.383 (6) | C15—H151 | 0.951 |
| C4—H41 | 0.941 | C17—C18 | 1.520 (5) |
| C5—C6 | 1.372 (7) | C17—F1 | 1.307 (4) |
| C5—H51 | 0.936 | C17—F2 | 1.322 (5) |
| C6—C7 | 1.368 (6) | C17—F3 | 1.328 (5) |
| C6—H61 | 0.928 | C17—C18 | 1.520 (5) |
| C7—C8 | 1.406 (5) | C17—F4 | 1.323 (7) |
| C7—H71 | 0.934 | C17—F5 | 1.323 (7) |
| C8—C9 | 1.451 (5) | C17—F6 | 1.323 (7) |
| C9—C10 | 1.352 (5) | C18—O1 | 1.209 (4) |
| C9—H91 | 0.944 | C18—O3 | 1.283 (5) |
| C10—C11 | 1.453 (6) | N1—H11 | 0.865 |
| C10—H101 | 0.938 | N1—H12 | 0.867 |
| C11—C12 | 1.405 (5) | O3—H5 | 0.887 |
| C2—C1—N1 | 119.0 (4) | C12—C11—C16 | 118.2 (4) |
| C2—C1—O2 | 119.3 (4) | C11—C12—C13 | 121.4 (4) |
| N1—C1—O2 | 121.6 (4) | C11—C12—H121 | 118.3 |
| C1—C2—C3 | 113.4 (4) | C13—C12—H121 | 120.4 |
| C1—C2—C16 | 110.5 (3) | C12—C13—C14 | 119.6 (4) |
| C3—C2—C16 | 113.4 (3) | C12—C13—H131 | 120.7 |
| C1—C2—H21 | 105.8 | C14—C13—H131 | 119.7 |
| C3—C2—H21 | 106.9 | C13—C14—C15 | 120.2 (4) |
| C16—C2—H21 | 106.2 | C13—C14—H141 | 120.7 |
| C2—C3—C4 | 119.9 (4) | C15—C14—H141 | 119.0 |
| C2—C3—C8 | 119.8 (4) | C14—C15—C16 | 120.8 (4) |
| C4—C3—C8 | 120.2 (4) | C14—C15—H151 | 119.6 |
| C3—C4—C5 | 121.2 (4) | C16—C15—H151 | 119.6 |
| C3—C4—H41 | 119.6 | C2—C16—C11 | 120.1 (4) |
| C5—C4—H41 | 119.2 | C2—C16—C15 | 120.1 (4) |
| C4—C5—C6 | 118.6 (4) | C11—C16—C15 | 119.7 (4) |
| C4—C5—H51 | 120.0 | C18—C17—F1 | 111.5 (4) |
| C6—C5—H51 | 121.3 | C18—C17—F2 | 111.6 (4) |
| C5—C6—C7 | 121.1 (4) | F1—C17—F2 | 107.9 (4) |
| C5—C6—H61 | 119.4 | C18—C17—F3 | 111.4 (4) |
| C7—C6—H61 | 119.5 | F1—C17—F3 | 108.7 (4) |
| C6—C7—C8 | 120.6 (4) | F2—C17—F3 | 105.6 (4) |
| C6—C7—H71 | 119.3 | C18—C17—F4 | 113.56 (6) |
| C8—C7—H71 | 120.1 | C18—C17—F5 | 113.57 (6) |
| C7—C8—C3 | 118.2 (4) | F4—C17—F5 | 105.08 (7) |
| C7—C8—C9 | 117.4 (4) | C18—C17—F6 | 113.57 (6) |
| C3—C8—C9 | 124.4 (4) | F4—C17—F6 | 105.08 (7) |
| C8—C9—C10 | 127.8 (4) | F5—C17—F6 | 105.08 (7) |
| C8—C9—H91 | 116.8 | C17—C18—O1 | 120.4 (4) |
| C10—C9—H91 | 115.3 | C17—C18—O3 | 111.8 (4) |
| C9—C10—C11 | 128.8 (4) | O1—C18—O3 | 127.8 (4) |
| C9—C10—H101 | 115.3 | C1—N1—H11 | 120.6 |
| C11—C10—H101 | 115.9 | C1—N1—H12 | 119.5 |
| C10—C11—C12 | 118.0 (4) | H11—N1—H12 | 119.9 |
| C10—C11—C16 | 123.9 (4) | C18—O3—H5 | 113.5 |
| H··· | ||||
| O3—H5···O2i | 0.89 | 1.58 | 2.462 (4) | 173 |
| N1—H11···O1ii | 0.86 | 2.23 | 2.976 (4) | 144 |
| N1—H12···O1iii | 0.87 | 2.16 | 2.982 (5) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H5⋯O2i | 0.89 | 1.58 | 2.462 (4) | 173 |
| N1—H11⋯O1ii | 0.86 | 2.23 | 2.976 (4) | 144 |
| N1—H12⋯O1iii | 0.87 | 2.16 | 2.982 (5) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) .