Literature DB >> 21202853

Cytenamide trifluoro-acetic acid solvate.

Andrea Johnston, Alastair J Florence, Francesca J A Fabbiani, Kenneth Shankland, Colin T Bedford, Julie Bardin.   

Abstract

Cytenamide forms a 1:1 solvate with trifluoro-acetic acid (systematic name: 5H-dibenzo[a,d]cyclo-hepta-triene-5-carboxamide trifluoro-acetic acid solvate), C(16)H(13)NO·C(2)HF(3)O(2). The compound crystallizes with one mol-ecule of cytenamide and one of trifluoro-acetic acid in the asymmetric unit; these are linked by O-H⋯O and N-H⋯O hydrogen bonds to form an R(2) (2)(8) motif. The trifluoro-methyl group of the solvent mol-ecule displays rotational disorder over two sites, with site-occupancy factors of 0.964 (4) and 0.036 (4).

Entities:  

Year:  2008        PMID: 21202853      PMCID: PMC2961719          DOI: 10.1107/S1600536808016577

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details on the experimental methods used to obtain this form, see: Davis et al. (1964 ▶); Florence et al. (2003 ▶); Florence, Johnston, Fernandes et al. (2006 ▶). For literature on carbamazepine and other related structures, see: Cyr et al. (1987 ▶); Fleischman et al. (2003 ▶); Florence, Johnston, Price et al. (2006 ▶); Florence, Leech et al. (2006 ▶); Bandoli et al. (1992 ▶); Harrison et al. (2006 ▶); Leech et al. (2007 ▶); Florence, Bedford et al. (2008 ▶); Florence, Shankland et al. (2008 ▶); Fernandes et al. (2007 ▶). For hydrogen-bond motifs, see: Etter (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H13NO·C2HF3O2 M = 349.31 Monoclinic, a = 12.1673 (11) Å b = 6.3235 (6) Å c = 21.4525 (15) Å β = 101.932 (8)° V = 1614.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 160 K 0.16 × 0.13 × 0.08 mm

Data collection

Oxford Diffraction Gemini S diffractometer Absorption correction: multi-scan (ABSPACK/CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.83, T max = 0.99 10796 measured reflections 2995 independent reflections 1423 reflections with I > 2σ(I) R int = 0.094

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.178 S = 1.04 2984 reflections 236 parameters 24 restraints H-atom parameters not refined Δρmax = 0.73 e Å−3 Δρmin = −0.60 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I. DOI: 10.1107/S1600536808016577/cf2202sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808016577/cf2202Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13NO·C2HF3O2F000 = 720
Mr = 349.31Dx = 1.437 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1137 reflections
a = 12.1673 (11) Åθ = 3–25º
b = 6.3235 (6) ŵ = 0.12 mm1
c = 21.4525 (15) ÅT = 160 K
β = 101.932 (8)ºBlock, colourless
V = 1614.9 (2) Å30.16 × 0.13 × 0.08 mm
Z = 4
Oxford Diffraction Gemini S diffractometer2995 independent reflections
Radiation source: Enhance (Mo) X-ray Source1423 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.094
Detector resolution: 15.9745 pixels mm-1θmax = 25.5º
T = 160 Kθmin = 3.1º
φ and ω scansh = −14→14
Absorption correction: multi-scan(ABSPACK/CrysAlis RED; Oxford Diffraction, 2006)k = 0→7
Tmin = 0.83, Tmax = 0.99l = 0→25
10796 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.080H-atom parameters not refined
wR(F2) = 0.178  Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.06P)2 + 0.42P] ,where P = (max(Fo2,0) + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.0004
2984 reflectionsΔρmax = 0.73 e Å3
236 parametersΔρmin = −0.60 e Å3
24 restraintsExtinction correction: None
xyzUiso*/UeqOcc. (<1)
C10.6284 (3)0.6720 (7)0.3296 (2)0.0461
C20.5488 (4)0.4854 (7)0.31163 (18)0.0431
C30.4806 (3)0.4971 (7)0.24379 (18)0.0380
C40.4965 (4)0.3481 (7)0.1996 (2)0.0507
C50.4406 (4)0.3618 (8)0.1366 (2)0.0578
C60.3726 (4)0.5332 (9)0.1180 (2)0.0576
C70.3553 (4)0.6826 (8)0.16104 (19)0.0519
C80.4077 (3)0.6646 (7)0.22567 (17)0.0393
C90.3794 (4)0.8214 (7)0.2691 (2)0.0475
C100.3773 (3)0.7968 (7)0.33147 (19)0.0456
C110.4028 (3)0.6095 (7)0.37105 (18)0.0369
C120.3488 (4)0.5854 (7)0.42250 (19)0.0470
C130.3646 (4)0.4094 (8)0.45999 (18)0.0515
C140.4337 (4)0.2524 (8)0.4474 (2)0.0570
C150.4912 (4)0.2755 (7)0.3988 (2)0.0497
C160.4774 (3)0.4536 (7)0.36104 (17)0.0374
C170.8909 (4)0.3112 (8)0.4387 (2)0.0572
C180.8197 (3)0.1386 (7)0.4008 (2)0.0461
N10.6679 (3)0.7697 (6)0.28446 (15)0.0533
O10.7936 (2)0.1490 (5)0.34338 (13)0.0564
O20.6593 (2)0.7215 (5)0.38684 (12)0.0591
O30.7904 (3)−0.0019 (5)0.43735 (12)0.0618
F10.9217 (4)0.4524 (6)0.40116 (15)0.10400.964 (4)
F20.9828 (2)0.2331 (5)0.47540 (13)0.07140.964 (4)
F30.8361 (3)0.4082 (5)0.47792 (16)0.08450.964 (4)
F40.846 (3)0.502 (2)0.429 (3)0.0800*0.036 (4)
F50.992 (2)0.330 (8)0.425 (3)0.0800*0.036 (4)
F60.910 (5)0.282 (6)0.5010 (4)0.0800*0.036 (4)
H110.64610.73320.24500.0619*
H120.71500.87300.29450.0619*
H210.59690.36010.31390.0495*
H410.54490.23310.21250.0596*
H510.44990.25590.10770.0680*
H610.33860.54870.07540.0651*
H710.30680.79530.14730.0581*
H910.35790.95630.25210.0539*
H1010.35560.91690.35160.0541*
H1210.30220.69590.43120.0539*
H1310.32780.39470.49430.0619*
H1410.44230.12600.47130.0647*
H1510.54140.16760.39140.0557*
H50.7404−0.09350.41690.0888*
U11U22U33U12U13U23
C10.033 (2)0.065 (3)0.040 (3)−0.002 (2)0.005 (2)0.003 (2)
C20.036 (2)0.047 (3)0.044 (2)0.008 (2)0.002 (2)−0.006 (2)
C30.028 (2)0.046 (3)0.041 (2)−0.007 (2)0.0095 (19)−0.007 (2)
C40.044 (3)0.056 (3)0.052 (3)0.000 (2)0.011 (2)−0.009 (2)
C50.056 (3)0.072 (4)0.048 (3)−0.012 (3)0.015 (2)−0.021 (3)
C60.053 (3)0.081 (4)0.036 (3)−0.011 (3)0.002 (2)−0.003 (3)
C70.044 (3)0.070 (3)0.041 (3)−0.004 (2)0.004 (2)0.002 (3)
C80.030 (2)0.049 (3)0.038 (2)−0.003 (2)0.0052 (19)0.000 (2)
C90.047 (3)0.041 (3)0.055 (3)0.002 (2)0.009 (2)−0.001 (2)
C100.047 (3)0.045 (3)0.047 (3)0.003 (2)0.013 (2)−0.006 (2)
C110.036 (2)0.037 (3)0.035 (2)−0.006 (2)0.0022 (19)−0.006 (2)
C120.047 (3)0.056 (3)0.038 (2)−0.005 (2)0.008 (2)−0.011 (2)
C130.050 (3)0.069 (4)0.035 (2)−0.014 (3)0.007 (2)0.006 (3)
C140.058 (3)0.057 (3)0.050 (3)−0.010 (3)−0.004 (2)0.011 (3)
C150.043 (3)0.055 (3)0.048 (3)−0.003 (2)0.001 (2)0.002 (2)
C160.040 (3)0.036 (3)0.032 (2)−0.002 (2)−0.0011 (19)−0.003 (2)
C170.054 (3)0.064 (4)0.055 (3)−0.003 (3)0.014 (3)−0.002 (3)
C180.034 (3)0.060 (3)0.044 (3)0.002 (2)0.007 (2)0.008 (3)
N10.043 (2)0.078 (3)0.038 (2)−0.017 (2)0.0045 (17)−0.009 (2)
O10.0488 (19)0.082 (2)0.0375 (17)−0.0082 (17)0.0064 (14)0.0091 (17)
O20.054 (2)0.090 (3)0.0300 (17)−0.0283 (18)0.0024 (14)−0.0002 (16)
O30.060 (2)0.085 (2)0.0362 (17)−0.0297 (19)−0.0009 (15)0.0067 (17)
F10.132 (3)0.101 (3)0.074 (2)−0.059 (3)0.008 (2)0.020 (2)
F20.0448 (18)0.091 (2)0.0715 (19)−0.0066 (16)−0.0045 (14)−0.0160 (17)
F30.075 (2)0.086 (2)0.095 (2)0.0090 (19)0.0230 (19)−0.027 (2)
C1—C21.525 (6)C11—C161.386 (5)
C1—N11.321 (5)C12—C131.363 (6)
C1—O21.247 (4)C12—H1210.942
C2—C31.521 (5)C13—C141.364 (6)
C2—C161.517 (6)C13—H1310.942
C2—H210.980C14—C151.378 (6)
C3—C41.379 (6)C14—H1410.945
C3—C81.384 (5)C15—C161.376 (5)
C4—C51.383 (6)C15—H1510.951
C4—H410.941C17—C181.520 (5)
C5—C61.372 (7)C17—F11.307 (4)
C5—H510.936C17—F21.322 (5)
C6—C71.368 (6)C17—F31.328 (5)
C6—H610.928C17—C181.520 (5)
C7—C81.406 (5)C17—F41.323 (7)
C7—H710.934C17—F51.323 (7)
C8—C91.451 (5)C17—F61.323 (7)
C9—C101.352 (5)C18—O11.209 (4)
C9—H910.944C18—O31.283 (5)
C10—C111.453 (6)N1—H110.865
C10—H1010.938N1—H120.867
C11—C121.405 (5)O3—H50.887
C2—C1—N1119.0 (4)C12—C11—C16118.2 (4)
C2—C1—O2119.3 (4)C11—C12—C13121.4 (4)
N1—C1—O2121.6 (4)C11—C12—H121118.3
C1—C2—C3113.4 (4)C13—C12—H121120.4
C1—C2—C16110.5 (3)C12—C13—C14119.6 (4)
C3—C2—C16113.4 (3)C12—C13—H131120.7
C1—C2—H21105.8C14—C13—H131119.7
C3—C2—H21106.9C13—C14—C15120.2 (4)
C16—C2—H21106.2C13—C14—H141120.7
C2—C3—C4119.9 (4)C15—C14—H141119.0
C2—C3—C8119.8 (4)C14—C15—C16120.8 (4)
C4—C3—C8120.2 (4)C14—C15—H151119.6
C3—C4—C5121.2 (4)C16—C15—H151119.6
C3—C4—H41119.6C2—C16—C11120.1 (4)
C5—C4—H41119.2C2—C16—C15120.1 (4)
C4—C5—C6118.6 (4)C11—C16—C15119.7 (4)
C4—C5—H51120.0C18—C17—F1111.5 (4)
C6—C5—H51121.3C18—C17—F2111.6 (4)
C5—C6—C7121.1 (4)F1—C17—F2107.9 (4)
C5—C6—H61119.4C18—C17—F3111.4 (4)
C7—C6—H61119.5F1—C17—F3108.7 (4)
C6—C7—C8120.6 (4)F2—C17—F3105.6 (4)
C6—C7—H71119.3C18—C17—F4113.56 (6)
C8—C7—H71120.1C18—C17—F5113.57 (6)
C7—C8—C3118.2 (4)F4—C17—F5105.08 (7)
C7—C8—C9117.4 (4)C18—C17—F6113.57 (6)
C3—C8—C9124.4 (4)F4—C17—F6105.08 (7)
C8—C9—C10127.8 (4)F5—C17—F6105.08 (7)
C8—C9—H91116.8C17—C18—O1120.4 (4)
C10—C9—H91115.3C17—C18—O3111.8 (4)
C9—C10—C11128.8 (4)O1—C18—O3127.8 (4)
C9—C10—H101115.3C1—N1—H11120.6
C11—C10—H101115.9C1—N1—H12119.5
C10—C11—C12118.0 (4)H11—N1—H12119.9
C10—C11—C16123.9 (4)C18—O3—H5113.5
D—H···AD—HH···AD···AD—H···A
O3—H5···O2i0.891.582.462 (4)173
N1—H11···O1ii0.862.232.976 (4)144
N1—H12···O1iii0.872.162.982 (5)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H5⋯O2i0.891.582.462 (4)173
N1—H11⋯O1ii0.862.232.976 (4)144
N1—H12⋯O1iii0.872.162.982 (5)159

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Indexing powder patterns in physical form screening: instrumentation and data quality.

Authors:  Alastair J Florence; Bruno Baumgartner; Chris Weston; Norman Shankland; Alan R Kennedy; Kenneth Shankland; William I F David
Journal:  J Pharm Sci       Date:  2003-09       Impact factor: 3.534

2.  ANTICONVULSANTS. I. DIBENZO(A,D)CYCLOHEPTADIENE-5-CARBOXAMIDE AND RELATED COMPOUNDS.

Authors:  M A DAVIS; S O WINTHROP; R A THOMAS; F HERR; M P CHAREST; R GAUDRY
Journal:  J Med Chem       Date:  1964-01       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  An automated parallel crystallisation search for predicted crystal structures and packing motifs of carbamazepine.

Authors:  Alastair J Florence; Andrea Johnston; Sarah L Price; Harriott Nowell; Alan R Kennedy; Norman Shankland
Journal:  J Pharm Sci       Date:  2006-09       Impact factor: 3.534

5.  An orthorhombic polymorph of 10,11-dihydrocarbamazepine.

Authors:  William T A Harrison; H S Yathirajan; H G Anilkumar
Journal:  Acta Crystallogr C       Date:  2006-04-13       Impact factor: 1.172

6.  Liquid chromatographic methods for assay of carbamazepine, 10,11-dihydrocarbamazepine, and related compounds in carbamazepine drug substance and tablets.

Authors:  T D Cyr; F Matsui; R W Sears; N M Curran; E G Lovering
Journal:  J Assoc Off Anal Chem       Date:  1987 Sep-Oct
  6 in total

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