Literature DB >> 21202822

Ethyl [(2-hydroxy-phen-yl)(pyridinium-2-ylamino)meth-yl]phospho-nate methanol solvate.

Ming-Xia Li1, Miao-Li Zhu, Li-Ping Lu.   

Abstract

In the title compound, C(14)H(17)N(2)On>an class="Chemical">(4)P·CH(3)OH, the planes of the pyridinium-2-ylamino and 2-hydroxy-phenyl groups form a dihedral angle of 75.6 (1)°, with the pyridinium NH group and the 2-hydroxy-phenyl OH group pointing in opposite directions. Three intra-molecular hydrogen bonds are observed. Two phospho-nate and two methanol mol-ecules are connected by O-H⋯O hydrogen bonds as a centrosymmetric dimeric cluster, and inter-act further with other dimeric clusters via N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds and C-H⋯π inter-actions, resulting in a sheet structure.

Entities:  

Year:  2008        PMID: 21202822      PMCID: PMC2961726          DOI: 10.1107/S1600536808015675

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bernstein et al. (1995 ▶); Briceño et al. (2007 ▶); Foster & Weinhold (1980 ▶); Jeffrey et al. (1985 ▶); Kaboudin & Moradi (2005 ▶); Kachkovskyi & Kolodiazhnyi (2007 ▶); Kafarski & Lejczak (2001 ▶); Liu et al. (2002 ▶); Meyer et al. (2004 ▶); Palacios et al. (2005 ▶); Rohovec et al. (1999 ▶).

Experimental

Crystal data

pan class="Chemical">C14H17N2O4P·CH4O M = 340.31 Monoclinic, a = 12.821 (3) Å b = 9.536 (2) Å c = 16.567 (3) Å β = 122.308 (14)° V = 1711.9 (6) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 298 (2) K 0.40 × 0.20 × 0.20 mm

Data collection

Bruker SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.875, T max = 0.964 6784 measured reflections 2991 independent reflections 2419 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.147 S = 1.14 2991 reflections 210 parameters 1 restraint H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶) and publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808015675/cf2201sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015675/cf2201Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17N2O4P·CH4OF000 = 720
Mr = 340.31Dx = 1.320 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1906 reflections
a = 12.821 (3) Åθ = 2.5–23.8º
b = 9.536 (2) ŵ = 0.19 mm1
c = 16.567 (3) ÅT = 298 (2) K
β = 122.308 (14)ºBlock, colourless
V = 1711.9 (6) Å30.40 × 0.20 × 0.20 mm
Z = 4
Bruker SMART 1K CCD diffractometer2991 independent reflections
Radiation source: fine-focus sealed tube2419 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.034
T = 298(2) Kθmax = 25.0º
ω scansθmin = 1.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 2000)h = −15→15
Tmin = 0.875, Tmax = 0.964k = −11→8
6784 measured reflectionsl = −17→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.067H-atom parameters constrained
wR(F2) = 0.147  w = 1/[σ2(Fo2) + (0.052P)2 + 1.1778P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
2991 reflectionsΔρmax = 0.34 e Å3
210 parametersΔρmin = −0.34 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.75798 (7)0.45914 (9)0.40161 (6)0.0359 (3)
O10.5572 (2)0.7872 (3)0.22842 (16)0.0561 (7)
H10.50070.84240.19640.067*
O20.7741 (2)0.3583 (3)0.33273 (18)0.0578 (7)
O30.86639 (19)0.4487 (2)0.50109 (15)0.0466 (6)
O40.63500 (19)0.4400 (2)0.38884 (15)0.0481 (6)
N10.8906 (2)0.6464 (3)0.37455 (17)0.0390 (7)
H1A0.95210.60230.42210.047*
N21.0392 (2)0.7331 (3)0.35182 (17)0.0381 (6)
H2A1.08520.67750.39960.046*
C10.6172 (3)0.8248 (3)0.3218 (2)0.0417 (8)
C20.5805 (3)0.9373 (4)0.3538 (3)0.0552 (10)
H20.51150.98930.31050.066*
C30.6448 (4)0.9723 (4)0.4481 (3)0.0681 (12)
H30.61901.04750.46900.082*
C40.7468 (4)0.8976 (5)0.5121 (3)0.0713 (12)
H40.79050.92150.57650.086*
C50.7848 (3)0.7865 (4)0.4808 (2)0.0545 (10)
H50.85490.73640.52460.065*
C60.7210 (3)0.7479 (3)0.3857 (2)0.0373 (7)
C70.7639 (3)0.6274 (3)0.3523 (2)0.0352 (7)
H70.70910.62170.28270.042*
C80.9195 (3)0.7286 (3)0.3241 (2)0.0336 (7)
C90.8361 (3)0.8096 (3)0.2451 (2)0.0415 (8)
H90.75300.81190.22490.050*
C100.8774 (3)0.8845 (4)0.1985 (2)0.0531 (10)
H100.82190.93790.14570.064*
C111.0008 (4)0.8832 (4)0.2277 (3)0.0559 (10)
H111.02820.93410.19460.067*
C121.0803 (3)0.8069 (4)0.3050 (3)0.0479 (9)
H121.16370.80510.32600.057*
C130.7568 (5)0.2100 (5)0.3340 (4)0.0900 (15)
H13A0.71220.17600.26870.108*
H13B0.70550.19310.35980.108*
C140.8694 (6)0.1287 (6)0.3889 (5)0.126 (2)
H14A0.91710.13630.36000.189*
H14B0.84890.03220.38990.189*
H14C0.91650.16400.45300.189*
O50.6628 (3)0.3431 (4)0.5586 (2)0.0890 (10)
H5A0.65140.37280.50800.107*
C150.5492 (6)0.3157 (8)0.5475 (5)0.125 (2)
H15A0.48960.29400.48180.187*
H15B0.52260.39670.56610.187*
H15C0.55710.23750.58680.187*
U11U22U33U12U13U23
P10.0292 (4)0.0369 (5)0.0371 (5)−0.0019 (4)0.0146 (4)0.0050 (4)
O10.0374 (13)0.0611 (17)0.0480 (15)0.0195 (12)0.0082 (11)0.0025 (12)
O20.0709 (17)0.0395 (14)0.0736 (17)−0.0025 (12)0.0458 (15)−0.0012 (12)
O30.0325 (12)0.0521 (15)0.0422 (13)0.0002 (10)0.0113 (10)0.0174 (11)
O40.0320 (12)0.0570 (15)0.0480 (13)−0.0098 (11)0.0164 (11)−0.0010 (11)
N10.0282 (13)0.0438 (16)0.0367 (14)0.0043 (12)0.0117 (12)0.0146 (12)
N20.0345 (14)0.0380 (15)0.0376 (15)0.0027 (12)0.0165 (12)0.0066 (12)
C10.0335 (17)0.0407 (19)0.048 (2)−0.0008 (15)0.0203 (16)0.0013 (16)
C20.052 (2)0.044 (2)0.071 (3)0.0119 (17)0.034 (2)0.0047 (19)
C30.087 (3)0.051 (3)0.077 (3)0.009 (2)0.050 (3)−0.012 (2)
C40.094 (3)0.060 (3)0.053 (2)−0.001 (2)0.035 (2)−0.013 (2)
C50.059 (2)0.049 (2)0.044 (2)0.0051 (18)0.0207 (18)0.0018 (17)
C60.0353 (17)0.0355 (18)0.0393 (18)−0.0013 (14)0.0188 (15)0.0040 (14)
C70.0259 (15)0.0401 (18)0.0308 (16)0.0009 (13)0.0093 (13)0.0038 (13)
C80.0355 (17)0.0302 (16)0.0327 (16)0.0000 (13)0.0165 (14)0.0021 (13)
C90.0400 (18)0.045 (2)0.0394 (18)0.0051 (15)0.0210 (15)0.0112 (15)
C100.061 (2)0.052 (2)0.043 (2)0.0107 (19)0.0250 (18)0.0176 (17)
C110.066 (3)0.052 (2)0.065 (2)0.001 (2)0.045 (2)0.0142 (19)
C120.047 (2)0.047 (2)0.059 (2)−0.0012 (17)0.0350 (19)0.0043 (18)
C130.100 (4)0.048 (3)0.121 (4)−0.006 (3)0.059 (3)−0.009 (3)
C140.135 (5)0.074 (4)0.176 (6)0.008 (4)0.088 (5)0.001 (4)
O50.073 (2)0.127 (3)0.0708 (19)0.0061 (19)0.0411 (17)0.0241 (19)
C150.113 (5)0.144 (6)0.158 (6)−0.003 (4)0.099 (5)0.024 (5)
P1—O41.486 (2)C5—H50.930
P1—O31.486 (2)C6—C71.502 (4)
P1—O21.588 (3)C7—H70.980
P1—C71.821 (3)C8—C91.399 (4)
O1—C11.357 (4)C9—C101.351 (4)
O1—H10.820C9—H90.930
O2—C131.433 (5)C10—C111.386 (5)
N1—C81.334 (4)C10—H100.930
N1—C71.473 (4)C11—C121.347 (5)
N1—H1A0.869C11—H110.930
N2—C81.347 (4)C12—H120.930
N2—C121.347 (4)C13—C141.451 (6)
N2—H2A0.870C13—H13A0.970
C1—C21.385 (5)C13—H13B0.970
C1—C61.387 (4)C14—H14A0.960
C2—C31.363 (5)C14—H14B0.960
C2—H20.930C14—H14C0.960
C3—C41.364 (6)O5—C151.391 (6)
C3—H30.930O5—H5A0.821
C4—C51.378 (5)C15—H15A0.960
C4—H40.930C15—H15B0.960
C5—C61.381 (4)C15—H15C0.960
O4—P1—O3116.22 (13)C6—C7—H7107.7
O4—P1—O2111.04 (14)P1—C7—H7107.7
O3—P1—O2110.63 (14)N1—C8—N2116.9 (3)
O4—P1—C7109.88 (14)N1—C8—C9125.5 (3)
O3—P1—C7108.56 (13)N2—C8—C9117.6 (3)
O2—P1—C799.12 (14)C10—C9—C8119.3 (3)
C1—O1—H1109.5C10—C9—H9120.4
C13—O2—P1120.4 (3)C8—C9—H9120.4
C8—N1—C7123.6 (2)C9—C10—C11121.3 (3)
C8—N1—H1A115.6C9—C10—H10119.3
C7—N1—H1A120.8C11—C10—H10119.3
C8—N2—C12123.1 (3)C12—C11—C10118.6 (3)
C8—N2—H2A112.8C12—C11—H11120.7
C12—N2—H2A123.9C10—C11—H11120.7
O1—C1—C2122.6 (3)N2—C12—C11120.0 (3)
O1—C1—C6117.3 (3)N2—C12—H12120.0
C2—C1—C6120.1 (3)C11—C12—H12120.0
C3—C2—C1120.5 (4)O2—C13—C14115.2 (4)
C3—C2—H2119.7O2—C13—H13A108.5
C1—C2—H2119.7C14—C13—H13A108.5
C2—C3—C4120.2 (4)O2—C13—H13B108.5
C2—C3—H3119.9C14—C13—H13B108.5
C4—C3—H3119.9H13A—C13—H13B107.5
C3—C4—C5119.7 (4)C13—C14—H14A109.5
C3—C4—H4120.2C13—C14—H14B109.5
C5—C4—H4120.2H14A—C14—H14B109.5
C4—C5—C6121.4 (4)C13—C14—H14C109.5
C4—C5—H5119.3H14A—C14—H14C109.5
C6—C5—H5119.3H14B—C14—H14C109.5
C5—C6—C1118.1 (3)C15—O5—H5A109.1
C5—C6—C7120.9 (3)O5—C15—H15A109.5
C1—C6—C7120.9 (3)O5—C15—H15B109.5
N1—C7—C6112.7 (3)H15A—C15—H15B109.5
N1—C7—P1107.5 (2)O5—C15—H15C109.5
C6—C7—P1113.4 (2)H15A—C15—H15C109.5
N1—C7—H7107.7H15B—C15—H15C109.5
O4—P1—O2—C13−55.0 (3)C1—C6—C7—P1−116.5 (3)
O3—P1—O2—C1375.6 (3)O4—P1—C7—N1174.96 (19)
C7—P1—O2—C13−170.5 (3)O3—P1—C7—N146.9 (2)
O1—C1—C2—C3−179.0 (3)O2—P1—C7—N1−68.6 (2)
C6—C1—C2—C3−0.9 (5)O4—P1—C7—C649.7 (2)
C1—C2—C3—C40.6 (6)O3—P1—C7—C6−78.4 (2)
C2—C3—C4—C50.1 (7)O2—P1—C7—C6166.1 (2)
C3—C4—C5—C6−0.6 (6)C7—N1—C8—N2−178.6 (3)
C4—C5—C6—C10.3 (5)C7—N1—C8—C91.3 (5)
C4—C5—C6—C7179.4 (3)C12—N2—C8—N1177.1 (3)
O1—C1—C6—C5178.6 (3)C12—N2—C8—C9−2.7 (5)
C2—C1—C6—C50.4 (5)N1—C8—C9—C10−177.7 (3)
O1—C1—C6—C7−0.5 (4)N2—C8—C9—C102.1 (5)
C2—C1—C6—C7−178.7 (3)C8—C9—C10—C11−0.4 (5)
C8—N1—C7—C6−78.5 (4)C9—C10—C11—C12−0.9 (6)
C8—N1—C7—P1155.8 (2)C8—N2—C12—C111.5 (5)
C5—C6—C7—N1−58.0 (4)C10—C11—C12—N20.4 (6)
C1—C6—C7—N1121.0 (3)P1—O2—C13—C14−99.2 (5)
C5—C6—C7—P164.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.872.572.957 (3)108
N2—H2A···O3i0.871.862.692 (3)160
N1—H1A···O3i0.872.032.813 (3)150
O1—H1···O4ii0.821.812.618 (3)170
C7—H7···O10.982.282.783 (4)111
C9—H9···O10.932.553.438 (5)160
C12—H12···O5i0.932.463.169 (5)133
O5—H5A···O40.821.982.795 (4)176
C14—H14B···Cgiii0.962.913.697 (8)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.872.572.957 (3)108
N2—H2A⋯O3i0.871.862.692 (3)160
N1—H1A⋯O3i0.872.032.813 (3)150
O1—H1⋯O4ii0.821.812.618 (3)170
C7—H7⋯O10.982.282.783 (4)111
C9—H9⋯O10.932.553.438 (5)160
C12—H12⋯O5i0.932.463.169 (5)133
O5—H5A⋯O40.821.982.795 (4)176
C14—H14BCgiii0.962.913.697 (8)141

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

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Review 4.  Synthesis of beta-aminophosphonates and -phosphinates.

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Journal:  Chem Rev       Date:  2005-03       Impact factor: 60.622

5.  Aminophosphonate inhibitors of dialkylglycine decarboxylase: structural basis for slow binding inhibition.

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  5 in total
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1.  Crystal structure of diethyl [(4-chloro-anilino)(4-hy-droxy-phen-yl)meth-yl]phospho-nate N,N-di-methyl-formamide monosolvate.

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2.  Crystal structure of diethyl [(4-nitro-phenyl-amino)(2-hy-droxy-phen-yl)meth-yl]phospho-nate methanol monosolvate.

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