Literature DB >> 21202794

trans-Diazido-(1,8-dibenzyl-1,3,6,8,10,13-hexa-azacyclo-tetra-deca-ne)nickel(II).

Jong Won Shin, Kil Sik Min.   

Abstract

In the centrosymmetric title compound, [Ni(N(3))(2)(C(22)H(34)N(6))], the Ni(II) ion is coordinated by the four secondary N atoms of the macrocyclic ligand in a square-planar fashion with two N atoms of the azide ions in axial positions, resulting in a tetra-gonally distorted octa-hedron. An N-H⋯N hydrogen-bonding inter-action between the secondary amine N atom of the macrocycle and an adjacent azide ion gives rise to a chain structure.

Entities:  

Year:  2008        PMID: 21202794      PMCID: PMC2961652          DOI: 10.1107/S1600536808018199

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Hancock (1990 ▶); Jacquinot & Hauser (2003 ▶); Jung et al. (1989 ▶); Larionova et al. (2003 ▶); Min & Suh (2001 ▶); Liu et al. (2006 ▶); Tsuge et al. (2004 ▶).

Experimental

Crystal data

[Ni(N3)2(C22H34N6)] M = 525.32 Monoclinic, a = 10.2150 (5) Å b = 15.8337 (9) Å c = 7.5477 (4) Å β = 92.817 (1)° V = 1219.30 (11) Å3 Z = 2 Mo Kα radiation μ = 0.83 mm−1 T = 173 (2) K 0.50 × 0.20 × 0.20 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.733, T max = 0.847 7464 measured reflections 2820 independent reflections 2456 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.092 S = 1.19 2820 reflections 160 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT and SHELXTL (Sheldrick, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808018199/er2057sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018199/er2057Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(N3)2(C22H34N6)]F000 = 556
Mr = 525.32Dx = 1.431 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2820 reflections
a = 10.2150 (5) Åθ = 2.0–28.3º
b = 15.8337 (9) ŵ = 0.83 mm1
c = 7.5477 (4) ÅT = 173 (2) K
β = 92.817 (1)ºBlock, violet
V = 1219.30 (11) Å30.50 × 0.20 × 0.20 mm
Z = 2
Siemens SMART CCD diffractometer2820 independent reflections
Radiation source: fine-focus sealed tube2456 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 173(2) Kθmax = 28.3º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −13→11
Tmin = 0.733, Tmax = 0.847k = −17→20
7464 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.092  w = 1/[σ2(Fo2) + (0.0239P)2 + 1.3575P] where P = (Fo2 + 2Fc2)/3
S = 1.19(Δ/σ)max < 0.001
2820 reflectionsΔρmax = 0.42 e Å3
160 parametersΔρmin = −0.29 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50001.00000.00000.01702 (11)
N10.37796 (18)0.89900 (12)0.0535 (2)0.0213 (4)
H10.39640.88210.17010.026*
N20.20050 (19)0.99153 (13)0.1463 (2)0.0243 (4)
N30.38842 (18)1.08789 (12)0.1271 (2)0.0204 (4)
H30.40851.08360.24830.024*
N40.6135 (2)0.97898 (13)0.2449 (2)0.0254 (4)
N50.57874 (18)0.93204 (12)0.3563 (2)0.0221 (4)
N60.5460 (2)0.88500 (14)0.4654 (3)0.0315 (5)
C10.4175 (2)0.83010 (15)−0.0648 (3)0.0268 (5)
H1A0.37910.8395−0.18620.032*
H1B0.38520.7753−0.02130.032*
C20.2360 (2)0.92198 (15)0.0349 (3)0.0240 (5)
H2A0.21390.9369−0.09040.029*
H2B0.18310.87200.06440.029*
C30.2447 (2)1.07476 (15)0.0969 (3)0.0255 (5)
H3A0.19791.11750.16580.031*
H3B0.22081.0842−0.03030.031*
C40.4333 (2)1.17143 (15)0.0675 (3)0.0258 (5)
H4A0.40501.21590.14950.031*
H4B0.39481.1839−0.05260.031*
C50.2105 (2)0.97543 (16)0.3375 (3)0.0256 (5)
H5A0.19641.02910.40120.031*
H5B0.30020.95550.37090.031*
C60.1129 (2)0.91069 (15)0.3963 (3)0.0230 (5)
C70.1481 (3)0.85575 (17)0.5339 (3)0.0302 (5)
H70.23520.85660.58410.036*
C80.0580 (3)0.79974 (17)0.5991 (3)0.0359 (6)
H80.08300.76330.69480.043*
C9−0.0681 (3)0.79699 (16)0.5245 (3)0.0322 (6)
H9−0.12980.75820.56790.039*
C10−0.1042 (2)0.85094 (16)0.3866 (3)0.0288 (5)
H10−0.19100.84910.33520.035*
C11−0.0144 (2)0.90777 (15)0.3228 (3)0.0254 (5)
H11−0.04010.94480.22840.031*
U11U22U33U12U13U23
Ni10.0202 (2)0.01814 (19)0.01269 (18)−0.00082 (17)0.00037 (13)0.00017 (16)
N10.0243 (10)0.0257 (10)0.0140 (8)−0.0017 (8)0.0009 (7)−0.0004 (7)
N20.0238 (9)0.0284 (11)0.0210 (9)−0.0012 (8)0.0040 (7)−0.0004 (8)
N30.0245 (10)0.0224 (10)0.0144 (8)−0.0005 (8)0.0011 (7)0.0005 (7)
N40.0283 (10)0.0301 (11)0.0174 (9)0.0000 (8)−0.0017 (8)0.0042 (8)
N50.0216 (10)0.0257 (10)0.0187 (9)0.0035 (8)−0.0029 (7)−0.0055 (8)
N60.0390 (12)0.0323 (12)0.0232 (10)−0.0042 (10)0.0017 (9)0.0044 (9)
C10.0291 (13)0.0229 (12)0.0287 (12)−0.0041 (10)0.0040 (9)−0.0039 (9)
C20.0238 (11)0.0306 (13)0.0175 (10)−0.0050 (10)0.0010 (8)−0.0025 (9)
C30.0245 (12)0.0289 (13)0.0230 (11)0.0022 (10)0.0005 (9)0.0011 (9)
C40.0310 (13)0.0199 (11)0.0267 (12)0.0019 (10)0.0029 (9)−0.0011 (9)
C50.0249 (12)0.0330 (13)0.0190 (11)−0.0031 (10)0.0019 (9)−0.0041 (9)
C60.0263 (12)0.0256 (12)0.0174 (10)0.0019 (10)0.0038 (8)−0.0053 (9)
C70.0308 (13)0.0342 (14)0.0249 (12)0.0026 (11)−0.0037 (10)0.0015 (10)
C80.0493 (16)0.0319 (14)0.0263 (13)0.0015 (12)0.0006 (11)0.0077 (10)
C90.0386 (15)0.0278 (13)0.0312 (13)−0.0065 (11)0.0124 (11)−0.0010 (10)
C100.0225 (12)0.0343 (14)0.0300 (12)0.0001 (10)0.0060 (9)−0.0056 (10)
C110.0238 (12)0.0283 (12)0.0243 (11)0.0053 (10)0.0033 (9)0.0008 (9)
Ni1—N32.0650 (18)C2—H2B0.9900
Ni1—N3i2.0650 (18)C3—H3A0.9900
Ni1—N12.0795 (19)C3—H3B0.9900
Ni1—N1i2.0795 (19)C4—C1i1.526 (3)
Ni1—N4i2.1592 (19)C4—H4A0.9900
Ni1—N42.1592 (19)C4—H4B0.9900
N1—C11.479 (3)C5—C61.512 (3)
N1—C21.495 (3)C5—H5A0.9900
N1—H10.9300C5—H5B0.9900
N2—C21.443 (3)C6—C71.389 (3)
N2—C31.448 (3)C6—C111.389 (3)
N2—C51.464 (3)C7—C81.385 (4)
N3—C41.477 (3)C7—H70.9500
N3—C31.489 (3)C8—C91.381 (4)
N3—H30.9300C8—H80.9500
N4—N51.189 (3)C9—C101.383 (4)
N5—N61.171 (3)C9—H90.9500
C1—C4i1.526 (3)C10—C111.388 (3)
C1—H1A0.9900C10—H100.9500
C1—H1B0.9900C11—H110.9500
C2—H2A0.9900
N3—Ni1—N3i180.0N1—C2—H2A108.8
N3—Ni1—N194.48 (7)N2—C2—H2B108.8
N3i—Ni1—N185.52 (7)N1—C2—H2B108.8
N3—Ni1—N1i85.52 (7)H2A—C2—H2B107.7
N3i—Ni1—N1i94.48 (7)N2—C3—N3113.92 (19)
N1—Ni1—N1i180.0N2—C3—H3A108.8
N3—Ni1—N4i90.49 (7)N3—C3—H3A108.8
N3i—Ni1—N4i89.51 (7)N2—C3—H3B108.8
N1—Ni1—N4i89.03 (7)N3—C3—H3B108.8
N1i—Ni1—N4i90.97 (7)H3A—C3—H3B107.7
N3—Ni1—N489.51 (7)N3—C4—C1i108.36 (19)
N3i—Ni1—N490.49 (7)N3—C4—H4A110.0
N1—Ni1—N490.97 (7)C1i—C4—H4A110.0
N1i—Ni1—N489.03 (7)N3—C4—H4B110.0
N4i—Ni1—N4180.00 (10)C1i—C4—H4B110.0
C1—N1—C2114.54 (17)H4A—C4—H4B108.4
C1—N1—Ni1105.41 (13)N2—C5—C6113.11 (19)
C2—N1—Ni1112.49 (14)N2—C5—H5A109.0
C1—N1—H1108.1C6—C5—H5A109.0
C2—N1—H1108.1N2—C5—H5B109.0
Ni1—N1—H1108.1C6—C5—H5B109.0
C2—N2—C3117.02 (18)H5A—C5—H5B107.8
C2—N2—C5115.73 (19)C7—C6—C11118.8 (2)
C3—N2—C5113.87 (19)C7—C6—C5119.6 (2)
C4—N3—C3113.36 (18)C11—C6—C5121.5 (2)
C4—N3—Ni1105.99 (13)C8—C7—C6121.0 (2)
C3—N3—Ni1113.40 (14)C8—C7—H7119.5
C4—N3—H3108.0C6—C7—H7119.5
C3—N3—H3108.0C9—C8—C7119.9 (2)
Ni1—N3—H3108.0C9—C8—H8120.1
N5—N4—Ni1122.34 (16)C7—C8—H8120.1
N6—N5—N4179.0 (2)C8—C9—C10119.7 (2)
N1—C1—C4i108.84 (19)C8—C9—H9120.1
N1—C1—H1A109.9C10—C9—H9120.1
C4i—C1—H1A109.9C9—C10—C11120.4 (2)
N1—C1—H1B109.9C9—C10—H10119.8
C4i—C1—H1B109.9C11—C10—H10119.8
H1A—C1—H1B108.3C10—C11—C6120.3 (2)
N2—C2—N1113.67 (18)C10—C11—H11119.9
N2—C2—H2A108.8C6—C11—H11119.9
N3—Ni1—N1—C1165.54 (14)C3—N2—C2—N172.2 (3)
N3i—Ni1—N1—C1−14.46 (14)C5—N2—C2—N1−66.4 (2)
N4i—Ni1—N1—C175.12 (14)C1—N1—C2—N2−177.66 (18)
N4—Ni1—N1—C1−104.88 (14)Ni1—N1—C2—N2−57.3 (2)
N3—Ni1—N1—C240.06 (14)C2—N2—C3—N3−71.2 (3)
N3i—Ni1—N1—C2−139.94 (14)C5—N2—C3—N368.1 (2)
N4i—Ni1—N1—C2−50.35 (14)C4—N3—C3—N2176.97 (18)
N4—Ni1—N1—C2129.65 (14)Ni1—N3—C3—N256.1 (2)
N1—Ni1—N3—C4−164.63 (14)C3—N3—C4—C1i−166.97 (18)
N1i—Ni1—N3—C415.37 (14)Ni1—N3—C4—C1i−41.96 (19)
N4i—Ni1—N3—C4−75.56 (14)C2—N2—C5—C6−66.6 (3)
N4—Ni1—N3—C4104.44 (14)C3—N2—C5—C6153.5 (2)
N1—Ni1—N3—C3−39.65 (15)N2—C5—C6—C7145.0 (2)
N1i—Ni1—N3—C3140.35 (15)N2—C5—C6—C11−38.7 (3)
N4i—Ni1—N3—C349.42 (15)C11—C6—C7—C8−0.9 (4)
N4—Ni1—N3—C3−130.58 (15)C5—C6—C7—C8175.5 (2)
N3—Ni1—N4—N583.63 (19)C6—C7—C8—C91.2 (4)
N3i—Ni1—N4—N5−96.37 (19)C7—C8—C9—C10−0.8 (4)
N1—Ni1—N4—N5−10.84 (19)C8—C9—C10—C110.0 (4)
N1i—Ni1—N4—N5169.16 (19)C9—C10—C11—C60.3 (4)
C2—N1—C1—C4i165.51 (18)C7—C6—C11—C100.1 (3)
Ni1—N1—C1—C4i41.3 (2)C5—C6—C11—C10−176.2 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3···N6ii0.932.243.145 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯N6i0.932.243.145 (3)163

Symmetry code: (i) .

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