| Literature DB >> 21202754 |
Chomchai Suksai, Sarayut Watchasit, Thawatchai Tuntulani, Chaveng Pakawatchai.
Abstract
In the title compound, [Zn(C(20)H(17)N(4)O(3))(2)(H(2)O)(2)], the Zn(II) atom, lying on a twofold rotation axis, is six-coordinated in a distorted octa-hedral geometry by two phenolate O atoms and two carbonyl O atoms from two 2,6-bis-[(pyridin-2-ylmeth-yl)-carbamo-yl]phenolate ligands and by two water mol-ecules. A three-dimensional network is built up from an extensive array of hydrogen bonds and π-π inter-actions between the pyridyl rings, with a centroid-centroid distance of 3.666 (3) Å.Entities:
Year: 2008 PMID: 21202754 PMCID: PMC2961791 DOI: 10.1107/S1600536808016693
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C20H17N4O3)2(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 4398 reflections |
| θ = 1.9–28.0º | |
| µ = 0.74 mm−1 | |
| β = 91.938 (7)º | Prism, colourless |
| 0.35 × 0.3 × 0.2 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 3575 reflections with |
| Monochromator: graphite | |
| θmax = 28.0º | |
| φ and ω scans | θmin = 1.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 21455 measured reflections | |
| 4398 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 4398 reflections | Δρmax = 0.52 e Å−3 |
| 260 parameters | Δρmin = −0.42 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. Compound (IV): To a solution of (III) (2.38 g, 10.2 mmol)
in dry CH2Cl2 (5 ml) was added to a well stirred mixture of
2-(aminomethyl)-pyridine (2.60 ml, 25.5 mmol) and NEt3
(5.33 ml, 38.3 mmol) in dried CH2Cl2 (5 ml)
under nitrogen atmosphere and the reaction was then left stirring
overnight. Next, the solvent was removed under vacuum and
the residue was purified by column chromatography on Al2O3
with 50% EtOAc:CH2Cl2 as eluent. The resulting
pale yellow solid was recrystallized in
diethyl ether to give a pure white solid (IV) (yield 68%, 2.68 g).
m.p. 120–125 °C. 1H-NMR (400 MHz, CDCl3): δ 8.70 (s, 2H, –NH),
8.61 (d, |
| C1 | 0.02286 (15) | 0.19100 (17) | 0.05522 (17) | 0.0236 (5) | |
| C2 | 0.09384 (16) | 0.24793 (18) | 0.06360 (17) | 0.0269 (6) | |
| C3 | 0.14191 (17) | 0.26133 (19) | −0.0097 (2) | 0.0343 (6) | |
| H3 | 0.1885 | 0.2972 | −0.0036 | 0.041* | |
| C4 | 0.12260 (19) | 0.2232 (2) | −0.0905 (2) | 0.0403 (7) | |
| H4 | 0.156 | 0.2329 | −0.1382 | 0.048* | |
| C5 | 0.05325 (18) | 0.1705 (2) | −0.10030 (19) | 0.0368 (7) | |
| H5 | 0.0395 | 0.1457 | −0.1553 | 0.044* | |
| C6 | 0.00339 (16) | 0.15366 (17) | −0.02945 (17) | 0.0264 (6) | |
| C7 | −0.06868 (17) | 0.09354 (18) | −0.04851 (19) | 0.0312 (6) | |
| C8 | −0.17697 (17) | 0.0002 (2) | 0.0089 (2) | 0.0389 (7) | |
| H8A | −0.183 | −0.0314 | 0.0645 | 0.047* | |
| H8B | −0.1619 | −0.0445 | −0.0347 | 0.047* | |
| C9 | −0.25903 (17) | 0.04027 (19) | −0.01925 (18) | 0.0299 (6) | |
| C10 | −0.27189 (18) | 0.1306 (2) | −0.0387 (2) | 0.0377 (7) | |
| H10 | −0.2288 | 0.1718 | −0.0348 | 0.045* | |
| C11 | −0.3496 (2) | 0.1594 (2) | −0.0642 (2) | 0.0461 (8) | |
| H11 | −0.3598 | 0.2203 | −0.0764 | 0.055* | |
| C12 | −0.4113 (2) | 0.0968 (3) | −0.0711 (2) | 0.0539 (9) | |
| H12 | −0.4638 | 0.1139 | −0.0897 | 0.065* | |
| C13 | −0.3936 (2) | 0.0081 (3) | −0.0498 (3) | 0.0578 (10) | |
| H13 | −0.4358 | −0.0343 | −0.0539 | 0.069* | |
| C14 | 0.11584 (15) | 0.29456 (18) | 0.14819 (19) | 0.0291 (6) | |
| C15 | 0.1960 (2) | 0.4212 (2) | 0.2162 (2) | 0.0428 (8) | |
| H15A | 0.2548 | 0.4131 | 0.2219 | 0.051* | |
| H15B | 0.1723 | 0.3991 | 0.2701 | 0.051* | |
| C16 | 0.17668 (18) | 0.5211 (2) | 0.20506 (19) | 0.0352 (6) | |
| N2 | 0.23880 (15) | 0.57968 (17) | 0.21397 (17) | 0.0372 (6) | |
| C20 | 0.2219 (2) | 0.6684 (2) | 0.2034 (2) | 0.0478 (8) | |
| H20 | 0.2647 | 0.7097 | 0.2104 | 0.057* | |
| C19 | 0.1456 (3) | 0.7013 (3) | 0.1829 (2) | 0.0544 (9) | |
| H19 | 0.137 | 0.7633 | 0.1753 | 0.065* | |
| C18 | 0.0825 (2) | 0.6416 (3) | 0.1738 (3) | 0.0615 (10) | |
| H18 | 0.0298 | 0.6619 | 0.1599 | 0.074* | |
| N1 | 0.16417 (16) | 0.36823 (17) | 0.14154 (17) | 0.0383 (6) | |
| H1 | 0.1771 | 0.3851 | 0.0894 | 0.046* | |
| C17 | 0.0979 (2) | 0.5508 (3) | 0.1857 (3) | 0.0553 (9) | |
| H17 | 0.0553 | 0.5091 | 0.1806 | 0.066* | |
| N3 | −0.11105 (14) | 0.06472 (16) | 0.01965 (16) | 0.0339 (5) | |
| H3A | −0.0987 | 0.0852 | 0.0716 | 0.041* | |
| N4 | −0.31909 (16) | −0.02078 (19) | −0.02365 (19) | 0.0458 (7) | |
| O1 | −0.02465 (11) | 0.17550 (13) | 0.12131 (12) | 0.0297 (4) | |
| O2 | 0.09257 (12) | 0.26946 (14) | 0.22198 (13) | 0.0363 (5) | |
| O3 | −0.08908 (14) | 0.07239 (16) | −0.12543 (15) | 0.0473 (6) | |
| O4 | 0.08829 (13) | 0.06216 (15) | 0.24782 (15) | 0.0431 (5) | |
| Zn1 | 0 | 0.17016 (3) | 0.25 | 0.02664 (14) | |
| H24 | 0.0847 | 0.0211 | 0.2086 | 0.052 (11)* | |
| H23 | 0.1415 | 0.067 | 0.2476 | 0.078 (14)* |
| C1 | 0.0218 (12) | 0.0203 (12) | 0.0284 (13) | 0.0028 (10) | −0.0027 (10) | 0.0033 (10) |
| C2 | 0.0270 (13) | 0.0237 (13) | 0.0299 (14) | 0.0008 (11) | 0.0002 (11) | 0.0035 (11) |
| C3 | 0.0272 (14) | 0.0312 (15) | 0.0447 (17) | −0.0039 (12) | 0.0047 (12) | 0.0051 (13) |
| C4 | 0.0400 (17) | 0.0441 (18) | 0.0376 (17) | 0.0014 (14) | 0.0120 (13) | 0.0059 (14) |
| C5 | 0.0395 (16) | 0.0410 (17) | 0.0299 (15) | 0.0054 (14) | 0.0015 (12) | −0.0021 (13) |
| C6 | 0.0261 (13) | 0.0243 (14) | 0.0286 (13) | 0.0041 (10) | −0.0012 (10) | 0.0015 (10) |
| C7 | 0.0315 (14) | 0.0255 (14) | 0.0362 (16) | 0.0068 (11) | −0.0054 (12) | −0.0068 (12) |
| C8 | 0.0300 (15) | 0.0307 (16) | 0.055 (2) | −0.0043 (12) | −0.0110 (13) | 0.0031 (14) |
| C9 | 0.0305 (14) | 0.0292 (14) | 0.0296 (14) | −0.0046 (11) | −0.0042 (11) | 0.0031 (11) |
| C10 | 0.0344 (16) | 0.0315 (15) | 0.0472 (18) | −0.0007 (13) | −0.0008 (13) | 0.0027 (13) |
| C11 | 0.0454 (19) | 0.0428 (19) | 0.050 (2) | 0.0122 (15) | −0.0002 (15) | 0.0050 (15) |
| C12 | 0.0333 (17) | 0.068 (2) | 0.060 (2) | 0.0082 (17) | −0.0099 (15) | 0.0120 (19) |
| C13 | 0.0321 (17) | 0.062 (2) | 0.078 (3) | −0.0144 (17) | −0.0142 (17) | 0.019 (2) |
| C14 | 0.0208 (13) | 0.0247 (13) | 0.0412 (16) | 0.0002 (10) | −0.0071 (11) | 0.0041 (12) |
| C15 | 0.0442 (18) | 0.0369 (17) | 0.0462 (19) | −0.0125 (14) | −0.0135 (14) | 0.0017 (14) |
| C16 | 0.0353 (16) | 0.0353 (16) | 0.0346 (16) | −0.0068 (13) | −0.0049 (12) | 0.0002 (12) |
| N2 | 0.0360 (13) | 0.0322 (13) | 0.0427 (14) | −0.0078 (11) | −0.0071 (11) | −0.0002 (11) |
| C20 | 0.059 (2) | 0.0314 (16) | 0.052 (2) | −0.0095 (16) | −0.0073 (16) | −0.0007 (15) |
| C19 | 0.078 (3) | 0.0413 (19) | 0.043 (2) | 0.0131 (19) | −0.0050 (18) | −0.0011 (15) |
| C18 | 0.046 (2) | 0.067 (3) | 0.071 (3) | 0.0168 (19) | −0.0048 (18) | −0.002 (2) |
| N1 | 0.0448 (15) | 0.0336 (13) | 0.0361 (14) | −0.0177 (11) | −0.0047 (11) | 0.0052 (11) |
| C17 | 0.0342 (18) | 0.060 (2) | 0.071 (3) | −0.0095 (16) | −0.0053 (17) | −0.0001 (19) |
| N3 | 0.0292 (12) | 0.0327 (13) | 0.0393 (14) | −0.0066 (10) | −0.0069 (10) | −0.0016 (10) |
| N4 | 0.0349 (14) | 0.0403 (15) | 0.0615 (18) | −0.0121 (12) | −0.0109 (12) | 0.0156 (13) |
| O1 | 0.0258 (9) | 0.0377 (11) | 0.0256 (9) | −0.0075 (8) | 0.0001 (7) | 0.0014 (8) |
| O2 | 0.0420 (12) | 0.0356 (11) | 0.0309 (11) | −0.0135 (9) | −0.0033 (9) | 0.0007 (9) |
| O3 | 0.0514 (13) | 0.0489 (14) | 0.0410 (13) | −0.0034 (11) | −0.0087 (10) | −0.0180 (11) |
| O4 | 0.0323 (12) | 0.0397 (12) | 0.0567 (14) | 0.0075 (9) | −0.0049 (10) | −0.0215 (11) |
| Zn1 | 0.0272 (2) | 0.0271 (2) | 0.0254 (2) | 0 | −0.00199 (16) | 0 |
| C1—O1 | 1.307 (3) | C13—H13 | 0.93 |
| C1—C6 | 1.421 (4) | C14—O2 | 1.248 (3) |
| C1—C2 | 1.434 (4) | C14—N1 | 1.348 (3) |
| C2—C3 | 1.395 (4) | C15—N1 | 1.455 (4) |
| C2—C14 | 1.486 (4) | C15—C16 | 1.514 (4) |
| C3—C4 | 1.373 (4) | C15—H15A | 0.97 |
| C3—H3 | 0.93 | C15—H15B | 0.97 |
| C4—C5 | 1.378 (4) | C16—N2 | 1.336 (4) |
| C4—H4 | 0.93 | C16—C17 | 1.383 (4) |
| C5—C6 | 1.391 (4) | N2—C20 | 1.344 (4) |
| C5—H5 | 0.93 | C20—C19 | 1.365 (5) |
| C6—C7 | 1.495 (4) | C20—H20 | 0.93 |
| C7—O3 | 1.240 (3) | C19—C18 | 1.361 (6) |
| C7—N3 | 1.332 (4) | C19—H19 | 0.93 |
| C8—N3 | 1.442 (4) | C18—C17 | 1.371 (5) |
| C8—C9 | 1.514 (4) | C18—H18 | 0.93 |
| C8—H8A | 0.97 | N1—H1 | 0.86 |
| C8—H8B | 0.97 | C17—H17 | 0.93 |
| C9—N4 | 1.332 (4) | N3—H3A | 0.86 |
| C9—C10 | 1.377 (4) | O1—Zn1 | 1.9772 (18) |
| C10—C11 | 1.382 (4) | O2—Zn1 | 2.1572 (19) |
| C10—H10 | 0.93 | O4—Zn1 | 2.149 (2) |
| C11—C12 | 1.368 (5) | O4—H24 | 0.85 |
| C11—H11 | 0.93 | O4—H23 | 0.87 |
| C12—C13 | 1.374 (5) | Zn1—O1i | 1.9772 (18) |
| C12—H12 | 0.93 | Zn1—O4i | 2.149 (2) |
| C13—N4 | 1.338 (4) | Zn1—O2i | 2.1572 (19) |
| O1—C1—C6 | 120.1 (2) | C16—C15—H15A | 109.3 |
| O1—C1—C2 | 122.3 (2) | N1—C15—H15B | 109.3 |
| C6—C1—C2 | 117.5 (2) | C16—C15—H15B | 109.3 |
| C3—C2—C1 | 119.3 (2) | H15A—C15—H15B | 108 |
| C3—C2—C14 | 119.5 (2) | N2—C16—C17 | 121.2 (3) |
| C1—C2—C14 | 121.2 (2) | N2—C16—C15 | 117.5 (3) |
| C4—C3—C2 | 122.1 (3) | C17—C16—C15 | 121.3 (3) |
| C4—C3—H3 | 118.9 | C16—N2—C20 | 117.6 (3) |
| C2—C3—H3 | 118.9 | N2—C20—C19 | 123.7 (3) |
| C3—C4—C5 | 119.3 (3) | N2—C20—H20 | 118.2 |
| C3—C4—H4 | 120.4 | C19—C20—H20 | 118.2 |
| C5—C4—H4 | 120.4 | C18—C19—C20 | 118.6 (3) |
| C4—C5—C6 | 121.3 (3) | C18—C19—H19 | 120.7 |
| C4—C5—H5 | 119.3 | C20—C19—H19 | 120.7 |
| C6—C5—H5 | 119.3 | C19—C18—C17 | 118.8 (4) |
| C5—C6—C1 | 120.4 (2) | C19—C18—H18 | 120.6 |
| C5—C6—C7 | 115.9 (2) | C17—C18—H18 | 120.6 |
| C1—C6—C7 | 123.7 (2) | C14—N1—C15 | 124.6 (3) |
| O3—C7—N3 | 121.1 (3) | C14—N1—H1 | 117.7 |
| O3—C7—C6 | 121.0 (3) | C15—N1—H1 | 117.7 |
| N3—C7—C6 | 117.8 (2) | C18—C17—C16 | 120.1 (3) |
| N3—C8—C9 | 115.3 (2) | C18—C17—H17 | 119.9 |
| N3—C8—H8A | 108.4 | C16—C17—H17 | 119.9 |
| C9—C8—H8A | 108.4 | C7—N3—C8 | 122.0 (3) |
| N3—C8—H8B | 108.4 | C7—N3—H3A | 119 |
| C9—C8—H8B | 108.4 | C8—N3—H3A | 119 |
| H8A—C8—H8B | 107.5 | C9—N4—C13 | 117.6 (3) |
| N4—C9—C10 | 122.3 (3) | C1—O1—Zn1 | 130.85 (16) |
| N4—C9—C8 | 113.4 (2) | C14—O2—Zn1 | 127.87 (18) |
| C10—C9—C8 | 124.3 (3) | Zn1—O4—H24 | 121 |
| C9—C10—C11 | 119.2 (3) | Zn1—O4—H23 | 128 |
| C9—C10—H10 | 120.4 | H24—O4—H23 | 96 |
| C11—C10—H10 | 120.4 | O1—Zn1—O1i | 175.44 (11) |
| C12—C11—C10 | 118.9 (3) | O1—Zn1—O4i | 85.97 (8) |
| C12—C11—H11 | 120.5 | O1i—Zn1—O4i | 97.42 (8) |
| C10—C11—H11 | 120.5 | O1—Zn1—O4 | 97.42 (8) |
| C11—C12—C13 | 118.3 (3) | O1i—Zn1—O4 | 85.97 (8) |
| C11—C12—H12 | 120.8 | O4i—Zn1—O4 | 84.55 (12) |
| C13—C12—H12 | 120.8 | O1—Zn1—O2 | 84.29 (7) |
| N4—C13—C12 | 123.6 (3) | O1i—Zn1—O2 | 92.61 (8) |
| N4—C13—H13 | 118.2 | O4i—Zn1—O2 | 168.82 (8) |
| C12—C13—H13 | 118.2 | O4—Zn1—O2 | 91.26 (8) |
| O2—C14—N1 | 120.2 (3) | O1—Zn1—O2i | 92.61 (8) |
| O2—C14—C2 | 124.2 (2) | O1i—Zn1—O2i | 84.29 (7) |
| N1—C14—C2 | 115.7 (2) | O4i—Zn1—O2i | 91.26 (8) |
| N1—C15—C16 | 111.5 (3) | O4—Zn1—O2i | 168.82 (8) |
| N1—C15—H15A | 109.3 | O2—Zn1—O2i | 94.67 (12) |
| O1—C1—C2—C3 | 179.9 (2) | C17—C16—N2—C20 | 0.0 (5) |
| C6—C1—C2—C3 | −2.4 (4) | C15—C16—N2—C20 | 179.5 (3) |
| O1—C1—C2—C14 | −1.7 (4) | C16—N2—C20—C19 | −1.0 (5) |
| C6—C1—C2—C14 | 176.1 (2) | N2—C20—C19—C18 | 1.0 (6) |
| C1—C2—C3—C4 | 1.4 (4) | C20—C19—C18—C17 | 0.0 (6) |
| C14—C2—C3—C4 | −177.1 (3) | O2—C14—N1—C15 | 2.9 (4) |
| C2—C3—C4—C5 | 0.5 (5) | C2—C14—N1—C15 | −177.0 (3) |
| C3—C4—C5—C6 | −1.3 (5) | C16—C15—N1—C14 | −127.1 (3) |
| C4—C5—C6—C1 | 0.2 (4) | C19—C18—C17—C16 | −1.0 (6) |
| C4—C5—C6—C7 | −178.5 (3) | N2—C16—C17—C18 | 1.0 (5) |
| O1—C1—C6—C5 | 179.4 (2) | C15—C16—C17—C18 | −178.5 (3) |
| C2—C1—C6—C5 | 1.6 (4) | O3—C7—N3—C8 | 6.7 (4) |
| O1—C1—C6—C7 | −1.9 (4) | C6—C7—N3—C8 | −174.4 (2) |
| C2—C1—C6—C7 | −179.8 (2) | C9—C8—N3—C7 | −83.3 (4) |
| C5—C6—C7—O3 | −10.8 (4) | C10—C9—N4—C13 | 1.4 (5) |
| C1—C6—C7—O3 | 170.5 (3) | C8—C9—N4—C13 | −178.6 (3) |
| C5—C6—C7—N3 | 170.3 (2) | C12—C13—N4—C9 | −0.8 (6) |
| C1—C6—C7—N3 | −8.4 (4) | C6—C1—O1—Zn1 | 151.87 (19) |
| N3—C8—C9—N4 | −176.5 (3) | C2—C1—O1—Zn1 | −30.4 (4) |
| N3—C8—C9—C10 | 3.5 (5) | N1—C14—O2—Zn1 | 168.55 (19) |
| N4—C9—C10—C11 | −0.3 (5) | C2—C14—O2—Zn1 | −11.5 (4) |
| C8—C9—C10—C11 | 179.7 (3) | C1—O1—Zn1—O4i | −143.2 (2) |
| C9—C10—C11—C12 | −1.4 (5) | C1—O1—Zn1—O4 | −59.2 (2) |
| C10—C11—C12—C13 | 1.9 (5) | C1—O1—Zn1—O2 | 31.3 (2) |
| C11—C12—C13—N4 | −0.8 (6) | C1—O1—Zn1—O2i | 125.8 (2) |
| C3—C2—C14—O2 | −159.3 (3) | C14—O2—Zn1—O1 | −9.8 (2) |
| C1—C2—C14—O2 | 22.2 (4) | C14—O2—Zn1—O1i | 173.6 (2) |
| C3—C2—C14—N1 | 20.6 (4) | C14—O2—Zn1—O4i | 19.8 (6) |
| C1—C2—C14—N1 | −157.9 (2) | C14—O2—Zn1—O4 | 87.6 (2) |
| N1—C15—C16—N2 | −127.8 (3) | C14—O2—Zn1—O2i | −101.9 (2) |
| N1—C15—C16—C17 | 51.7 (4) |
| H··· | ||||
| N3—H3A···O1 | 0.86 | 1.93 | 2.623 (3) | 136 |
| N1—H1···N4ii | 0.86 | 2.20 | 3.007 (4) | 155 |
| O4—H24···O3iii | 0.85 | 1.87 | 2.712 (3) | 174 |
| O4—H23···N2iv | 0.87 | 2.03 | 2.879 (3) | 163 |
| O1—Zn1 | 1.9772 (18) |
| O2—Zn1 | 2.1572 (19) |
| O4—Zn1 | 2.149 (2) |
| O1—Zn1—O1i | 175.44 (11) |
| O1—Zn1—O4i | 85.97 (8) |
| O1—Zn1—O4 | 97.42 (8) |
| O4i—Zn1—O4 | 84.55 (12) |
| O1—Zn1—O2 | 84.29 (7) |
| O4—Zn1—O2 | 91.26 (8) |
| O1—Zn1—O2i | 92.61 (8) |
| O4—Zn1—O2i | 168.82 (8) |
| O2—Zn1—O2i | 94.67 (12) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 1.93 | 2.623 (3) | 136 |
| N1—H1⋯N4ii | 0.86 | 2.20 | 3.007 (4) | 155 |
| O4—H24⋯O3iii | 0.85 | 1.87 | 2.712 (3) | 174 |
| O4—H23⋯N2iv | 0.87 | 2.03 | 2.879 (3) | 163 |
Symmetry codes: (ii) ; (iii) ; (iv) .