Literature DB >> 21202740

catena-Poly[[[diaqua-nickel(II)]-di-μ-glycine] dichloride].

Cynn Dee Ch'ng, Siang Guan Teoh, Suchada Chantrapromma, Hoong-Kun Fun, Siu Mun Goh.   

Abstract

In the polymeric title complex, {[Ni(C(2)H(5)NO(2))(2)(H(2)O)(2)]Cl(2)}(n), the Ni(II) atom lies on an inversion center and is in a distorted octa-hedral NiO(6) configuration, with four carboxyl-ate O atoms from four zwitterionic glycine mol-ecules forming the equatorial plane and two water O atoms occupying the axial positions. The Cl(-) counterions lie in the inter-stices. The Ni(II) complexes are linked into polymeric sheets parallel to the bc plane. These sheets are then further connected into a three-dimensional network by O-H⋯O, O-H⋯Cl and N-H⋯Cl hydrogen bonds, together with weak C-H⋯O inter-actions.

Entities:  

Year:  2008        PMID: 21202740      PMCID: PMC2961767          DOI: 10.1107/S1600536808015894

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For values of bond lengths and angles, see: Allen et al. (1987 ▶); Shannon (1976 ▶). For related structures, see, for example: Fleck & Bohatý (2005 ▶). For background to the application of nickel complexes, see, for example: Ferrari et al. (2002 ▶); Kasuga et al. (2001 ▶); Lancaster (1998 ▶); Matkar et al. (2006 ▶); Liang et al. (2004 ▶).

Experimental

Crystal data

[Ni(C2H5NO2)2(H2O)2]Cl2 M = 315.76 Monoclinic, a = 10.6006 (1) Å b = 5.8579 (1) Å c = 8.7113 (1) Å β = 90.489 (1)° V = 540.93 (1) Å3 Z = 2 Mo Kα radiation μ = 2.30 mm−1 T = 100.0 (1) K 0.32 × 0.22 × 0.12 mm

Data collection

Bruker SMART APEX2 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.530, T max = 0.775 11049 measured reflections 2372 independent reflections 2079 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.056 S = 1.06 2372 reflections 98 parameters All H-atom parameters refined Δρmax = 0.49 e Å−3 Δρmin = −0.68 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808015894/sj2507sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015894/sj2507Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C2H5NO2)2(H2O)2]Cl2F000 = 324
Mr = 315.76Dx = 1.939 Mg m3
Monoclinic, P21/cMelting point = 442–443 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 10.6006 (1) ÅCell parameters from 2372 reflections
b = 5.8579 (1) Åθ = 3.8–34.9º
c = 8.7113 (1) ŵ = 2.30 mm1
β = 90.489 (1)ºT = 100.0 (1) K
V = 540.928 (12) Å3Block, green
Z = 20.32 × 0.22 × 0.12 mm
Bruker SMART APEX2 CCD area-detector diffractometer2372 independent reflections
Radiation source: fine-focus sealed tube2079 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.032
Detector resolution: 8.33 pixels mm-1θmax = 35.0º
T = 100.0(1) Kθmin = 3.8º
ω scansh = −17→17
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −8→9
Tmin = 0.530, Tmax = 0.775l = −14→14
11049 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.023All H-atom parameters refined
wR(F2) = 0.056  w = 1/[σ2(Fo2) + (0.0259P)2 + 0.1363P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2372 reflectionsΔρmax = 0.49 e Å3
98 parametersΔρmin = −0.68 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.00000.00000.00637 (5)
Cl10.38948 (2)−0.28198 (5)−0.05133 (3)0.01159 (6)
O10.14915 (7)0.13388 (13)−0.11588 (8)0.00907 (13)
O20.04973 (7)0.34293 (14)−0.29470 (8)0.01009 (14)
N10.37953 (8)0.22021 (18)−0.21419 (11)0.00996 (16)
C10.14619 (9)0.25515 (18)−0.23533 (11)0.00790 (16)
C20.27217 (9)0.2880 (2)−0.31479 (12)0.01036 (18)
O1W0.10514 (8)−0.28293 (15)0.04954 (9)0.01166 (15)
H2A0.2839 (16)0.444 (3)−0.345 (2)0.017 (4)*
H2B0.2718 (16)0.195 (3)−0.4024 (19)0.018 (4)*
H1N10.4466 (17)0.204 (3)−0.2731 (19)0.020 (4)*
H2N10.3641 (15)0.088 (3)−0.1668 (19)0.015 (4)*
H3N10.3947 (17)0.323 (3)−0.142 (2)0.025 (5)*
H1W10.087 (2)−0.324 (4)0.139 (2)0.038 (6)*
H2W10.180 (2)−0.284 (3)0.032 (2)0.032 (5)*
U11U22U33U12U13U23
Ni10.00560 (8)0.00757 (9)0.00594 (8)−0.00004 (6)0.00067 (5)0.00022 (6)
Cl10.00941 (10)0.01139 (12)0.01402 (11)0.00140 (8)0.00280 (8)0.00077 (8)
O10.0083 (3)0.0107 (4)0.0082 (3)−0.0006 (3)0.0007 (2)0.0023 (2)
O20.0085 (3)0.0132 (4)0.0086 (3)0.0018 (3)0.0000 (2)0.0022 (3)
N10.0075 (3)0.0121 (4)0.0103 (4)−0.0001 (3)0.0009 (3)0.0021 (3)
C10.0079 (4)0.0085 (4)0.0074 (4)−0.0009 (3)0.0011 (3)−0.0007 (3)
C20.0071 (4)0.0145 (5)0.0095 (4)0.0000 (3)0.0007 (3)0.0033 (3)
O1W0.0089 (3)0.0129 (4)0.0133 (3)0.0023 (3)0.0028 (3)0.0027 (3)
Ni1—O1i2.0398 (7)N1—C21.4845 (14)
Ni1—O12.0399 (7)N1—H1N10.885 (18)
Ni1—O1Wi2.0413 (8)N1—H2N10.893 (18)
Ni1—O1W2.0414 (8)N1—H3N10.884 (19)
Ni1—O2ii2.0753 (7)C1—C21.5217 (14)
Ni1—O2iii2.0753 (7)C2—H2A0.959 (18)
O1—C11.2601 (12)C2—H2B0.939 (17)
O2—C11.2524 (12)O1W—H1W10.84 (2)
O2—Ni1iv2.0753 (7)O1W—H2W10.81 (2)
O1i—Ni1—O1180.0C2—N1—H2N1111.2 (11)
O1i—Ni1—O1Wi89.58 (3)H1N1—N1—H2N1109.0 (15)
O1—Ni1—O1Wi90.42 (3)C2—N1—H3N1111.7 (12)
O1i—Ni1—O1W90.42 (3)H1N1—N1—H3N1110.1 (16)
O1—Ni1—O1W89.58 (3)H2N1—N1—H3N1107.3 (16)
O1Wi—Ni1—O1W180.0O2—C1—O1125.94 (9)
O1i—Ni1—O2ii86.34 (3)O2—C1—C2118.48 (9)
O1—Ni1—O2ii93.66 (3)O1—C1—C2115.54 (9)
O1Wi—Ni1—O2ii87.50 (3)N1—C2—C1111.66 (8)
O1W—Ni1—O2ii92.50 (3)N1—C2—H2A108.4 (10)
O1i—Ni1—O2iii93.66 (3)C1—C2—H2A111.2 (10)
O1—Ni1—O2iii86.34 (3)N1—C2—H2B108.8 (10)
O1Wi—Ni1—O2iii92.50 (3)C1—C2—H2B107.4 (10)
O1W—Ni1—O2iii87.50 (3)H2A—C2—H2B109.4 (14)
O2ii—Ni1—O2iii180.0Ni1—O1W—H1W1107.7 (15)
C1—O1—Ni1127.70 (7)Ni1—O1W—H2W1120.0 (14)
C1—O2—Ni1iv137.59 (7)H1W1—O1W—H2W1114 (2)
C2—N1—H1N1107.6 (11)
O1Wi—Ni1—O1—C1−35.21 (9)Ni1iv—O2—C1—C210.54 (16)
O1W—Ni1—O1—C1144.79 (9)Ni1—O1—C1—O210.33 (16)
O2ii—Ni1—O1—C1−122.74 (9)Ni1—O1—C1—C2−167.51 (7)
O2iii—Ni1—O1—C157.26 (9)O2—C1—C2—N1167.23 (9)
Ni1iv—O2—C1—O1−167.25 (8)O1—C1—C2—N1−14.75 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···Cl1v0.886 (18)2.326 (17)3.2021 (9)170.2 (15)
N1—H2N1···Cl10.893 (17)2.404 (17)3.2673 (11)162.7 (14)
N1—H3N1···Cl1vi0.884 (18)2.446 (18)3.2442 (11)150.4 (15)
O1W—H1W1···O2vii0.840 (18)2.00 (2)2.7276 (11)145 (2)
O1W—H2W1···Cl10.81 (2)2.34 (2)3.1468 (9)172.8 (17)
C2—H2B···O1viii0.938 (17)2.472 (17)2.9549 (13)112.0 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯Cl1i0.886 (18)2.326 (17)3.2021 (9)170.2 (15)
N1—H2N1⋯Cl10.893 (17)2.404 (17)3.2673 (11)162.7 (14)
N1—H3N1⋯Cl1ii0.884 (18)2.446 (18)3.2442 (11)150.4 (15)
O1W—H1W1⋯O2iii0.840 (18)2.00 (2)2.7276 (11)145 (2)
O1W—H2W1⋯Cl10.81 (2)2.34 (2)3.1468 (9)172.8 (17)
C2—H2B⋯O1iv0.938 (17)2.472 (17)2.9549 (13)112.0 (13)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and X-ray structures of new antiproliferative and proapoptotic natural aldehyde thiosemicarbazones and their nickel(II) and copper(II) complexes.

Authors:  Marisa Belicchi Ferrari; Franco Bisceglie; Giorgio Pelosi; Monica Sassi; Pieralberto Tarasconi; Mara Cornia; Silvia Capacchi; Roberto Albertini; Silvana Pinelli
Journal:  J Inorg Biochem       Date:  2002-06-07       Impact factor: 4.155

3.  Two novel glycine metal halogenides: catena-poly[[[diaquanickel(II)]-di-mu-glycine] dibromide] and catena-poly[[[tetraaquamagnesium(II)]-mu-glycine] dichloride].

Authors:  Michel Fleck; Ladislav Bohatý
Journal:  Acta Crystallogr C       Date:  2005-08-20       Impact factor: 1.172

4.  Two closely related nickel complexes have different effects on DNA damage and cell viability.

Authors:  Smita S Matkar; Lisa A Wrischnik; Patrick R Jones; Utha Hellmann-Blumberg
Journal:  Biochem Biophys Res Commun       Date:  2006-03-15       Impact factor: 3.575

5.  Synthesis, structural characterization and antimicrobial activities of 4- and 6-coordinate nickel(II) complexes with three thiosemicarbazones and semicarbazone ligands.

Authors:  N C Kasuga; K Sekino; C Koumo; N Shimada; M Ishikawa; K Nomiya
Journal:  J Inorg Biochem       Date:  2001-03       Impact factor: 4.155

6.  Nickel(II) and cobalt(II) complexes of hydroxyl-substituted triazamacrocyclic ligand as potential antitumor agents.

Authors:  Feng Liang; Ping Wang; Xiang Zhou; Tao Li; Zhaoyang Li; Huakuan Lin; Dongzhao Gao; Congyi Zheng; Chengtai Wu
Journal:  Bioorg Med Chem Lett       Date:  2004-04-19       Impact factor: 2.823

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.