Literature DB >> 21202739

Aquadi-n-but-yl(5-methyl-pyrazine-2-carboxyl-ato)tin(IV) methanol solvate.

Zhongjun Gao1.   

Abstract

In the monomeric title compound, [Sn(C(4)H(9))(2)(C(6)H(5)N(2)O(2))(2)(H(2)O)]·CH(3)OH, the Sn atom is seven-coordinate, displaying a distorted penta-gonal bipyramidal SnC(2)N(2)O(3) geometry with the two C atoms in the axial sites. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link the complex and solvent mol-ecules into infinite chains.

Entities:  

Year:  2008        PMID: 21202739      PMCID: PMC2961732          DOI: 10.1107/S1600536808016140

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Gielen et al. (1988 ▶). For a related structure, see: Ma et al. (2004 ▶).

Experimental

Crystal data

[Sn(C4H9)2(C6H5N2O2)2(H2O)]·CH4O M = 557.21 Monoclinic, a = 20.609 (5) Å b = 17.119 (4) Å c = 14.558 (3) Å β = 98.178 (3)° V = 5084 (2) Å3 Z = 8 Mo Kα radiation μ = 1.05 mm−1 T = 298 (2) K 0.58 × 0.56 × 0.49 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.582, T max = 0.628 12959 measured reflections 4462 independent reflections 2981 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.122 S = 1.12 4462 reflections 289 parameters 12 restraints H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.67 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808016140/hb2726sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808016140/hb2726Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sn(C4H9)2(C6H5N2O2)2(H2O)]·CH4OF000 = 2288
Mr = 557.21Dx = 1.456 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4606 reflections
a = 20.609 (5) Åθ = 2.4–25.3º
b = 17.119 (4) ŵ = 1.05 mm1
c = 14.558 (3) ÅT = 298 (2) K
β = 98.178 (3)ºBlock, colourless
V = 5084 (2) Å30.58 × 0.56 × 0.49 mm
Z = 8
Bruker SMART CCD diffractometer4462 independent reflections
Radiation source: fine-focus sealed tube2981 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.039
T = 298(2) Kθmax = 25.0º
ω scansθmin = 1.6º
Absorption correction: multi-scan(SADABS; Bruker, 1998)h = −15→24
Tmin = 0.582, Tmax = 0.628k = −20→20
12959 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.122  w = 1/[σ2(Fo2) + (0.0455P)2 + 11.2132P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.002
4462 reflectionsΔρmax = 0.58 e Å3
289 parametersΔρmin = −0.67 e Å3
12 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn10.256428 (17)1.005653 (19)0.41391 (2)0.05022 (15)
N10.3679 (2)0.9489 (2)0.4509 (3)0.0496 (10)
N20.4975 (2)0.9001 (3)0.4682 (4)0.0746 (15)
N30.1453 (2)1.0475 (3)0.4696 (3)0.0597 (12)
N40.0240 (3)1.1105 (4)0.4929 (4)0.0858 (17)
O10.30863 (18)1.0137 (2)0.2956 (2)0.0579 (9)
O20.4017 (2)1.0160 (3)0.2351 (3)0.0784 (12)
O30.18771 (19)1.0558 (2)0.3031 (3)0.0673 (11)
O40.09289 (19)1.1052 (3)0.2392 (3)0.0757 (12)
O50.26009 (19)0.9499 (2)0.5931 (3)0.0736 (11)
H10.23270.91350.59830.088*
H20.27300.96470.64840.088*
C10.3704 (3)1.0012 (3)0.2976 (4)0.0529 (13)
C20.4039 (3)0.9618 (3)0.3833 (4)0.0513 (13)
C30.4686 (3)0.9380 (4)0.3940 (4)0.0679 (16)
H30.49320.94910.34670.082*
C40.4612 (3)0.8866 (3)0.5350 (4)0.0620 (15)
C50.3965 (3)0.9124 (3)0.5273 (4)0.0591 (14)
H50.37270.90420.57620.071*
C60.4918 (3)0.8426 (4)0.6191 (4)0.090 (2)
H6A0.53640.83000.61290.135*
H6B0.46770.79530.62500.135*
H6C0.49100.87430.67330.135*
C70.1295 (3)1.0804 (3)0.3063 (4)0.0586 (14)
C80.1057 (3)1.0790 (3)0.3989 (4)0.0532 (13)
C90.0454 (3)1.1085 (4)0.4106 (5)0.0747 (18)
H90.01831.12790.35910.090*
C100.0627 (3)1.0788 (4)0.5628 (5)0.0722 (17)
C110.1233 (3)1.0474 (4)0.5517 (4)0.0729 (17)
H110.14921.02560.60270.087*
C120.0393 (4)1.0786 (5)0.6554 (5)0.103 (3)
H12A−0.00331.10220.64990.155*
H12B0.06941.10760.69890.155*
H12C0.03681.02580.67670.155*
C130.2915 (4)1.1117 (4)0.4756 (5)0.091 (2)
H13A0.31651.13640.43190.110*
H13B0.25321.14420.47780.110*
C140.3295 (5)1.1185 (4)0.5624 (6)0.128 (3)
H14A0.36711.08430.56330.153*
H14B0.30381.09900.60840.153*
C150.3547 (4)1.1996 (4)0.5931 (7)0.111 (3)
H15A0.38141.21970.54880.133*
H15B0.31781.23460.59380.133*
C160.3937 (5)1.1977 (5)0.6860 (7)0.139 (4)
H16A0.40911.24940.70290.208*
H16B0.43051.16340.68540.208*
H16C0.36701.17920.73030.208*
C170.2167 (3)0.8926 (3)0.3962 (4)0.0697 (17)
H17A0.24040.85900.44310.084*
H17B0.17160.89460.40790.084*
C180.2177 (4)0.8561 (4)0.3060 (5)0.107 (3)
H18A0.26270.84970.29500.129*
H18B0.19550.88950.25770.129*
C190.1832 (6)0.7749 (5)0.3022 (7)0.148 (4)
H19A0.20500.74310.35250.178*
H19B0.13840.78260.31330.178*
C200.1821 (7)0.7340 (7)0.2212 (9)0.217 (7)
H20A0.15970.68530.22580.326*
H20B0.22620.72400.21030.326*
H20C0.15960.76400.17070.326*
C210.1267 (4)0.7823 (4)0.5608 (5)0.104 (3)
H21A0.11470.74830.60810.156*
H21B0.15510.75500.52490.156*
H21C0.08790.79860.52100.156*
O60.1586 (3)0.8466 (3)0.6014 (4)0.123 (2)
H60.13400.87030.63120.147*
U11U22U33U12U13U23
Sn10.0454 (2)0.0530 (2)0.0517 (2)0.00077 (18)0.00511 (16)−0.00375 (17)
N10.048 (2)0.050 (2)0.051 (3)0.001 (2)0.006 (2)−0.002 (2)
N20.057 (3)0.092 (4)0.074 (3)0.017 (3)0.004 (3)0.000 (3)
N30.055 (3)0.062 (3)0.062 (3)0.010 (2)0.010 (2)0.000 (2)
N40.066 (3)0.111 (5)0.084 (4)0.014 (3)0.024 (3)0.010 (3)
O10.046 (2)0.077 (2)0.050 (2)0.0019 (19)0.0050 (17)0.0063 (18)
O20.065 (3)0.114 (3)0.059 (3)0.007 (2)0.018 (2)0.018 (2)
O30.056 (2)0.088 (3)0.058 (2)0.019 (2)0.0097 (19)0.005 (2)
O40.057 (2)0.110 (3)0.058 (3)0.018 (2)0.002 (2)0.011 (2)
O50.072 (3)0.078 (3)0.069 (3)−0.014 (2)0.003 (2)0.000 (2)
C10.053 (3)0.058 (3)0.047 (3)0.001 (3)0.007 (3)−0.003 (3)
C20.049 (3)0.056 (3)0.049 (3)0.004 (3)0.006 (3)−0.007 (2)
C30.061 (4)0.083 (4)0.061 (4)0.012 (3)0.012 (3)−0.006 (3)
C40.061 (4)0.058 (3)0.063 (4)0.009 (3)−0.005 (3)−0.001 (3)
C50.058 (4)0.064 (3)0.054 (3)−0.002 (3)0.002 (3)−0.007 (3)
C60.087 (5)0.103 (5)0.077 (5)0.022 (4)0.000 (4)0.009 (4)
C70.051 (3)0.063 (3)0.060 (4)0.000 (3)0.001 (3)−0.004 (3)
C80.048 (3)0.054 (3)0.058 (3)0.002 (3)0.007 (3)−0.004 (3)
C90.052 (4)0.096 (5)0.075 (4)0.011 (3)0.006 (3)0.009 (4)
C100.072 (4)0.076 (4)0.073 (4)0.006 (4)0.024 (4)0.002 (3)
C110.074 (4)0.082 (4)0.062 (4)0.016 (4)0.010 (3)0.001 (3)
C120.101 (6)0.129 (7)0.090 (5)0.021 (5)0.048 (5)0.011 (5)
C130.122 (6)0.059 (4)0.084 (5)0.006 (4)−0.020 (5)−0.013 (3)
C140.136 (8)0.087 (6)0.148 (8)−0.019 (5)−0.023 (7)−0.027 (5)
C150.102 (6)0.070 (5)0.157 (8)−0.022 (4)0.007 (6)−0.034 (5)
C160.165 (10)0.097 (6)0.153 (9)−0.007 (6)0.016 (8)−0.028 (6)
C170.071 (4)0.053 (3)0.083 (4)−0.013 (3)0.005 (3)−0.003 (3)
C180.131 (7)0.083 (5)0.108 (6)−0.028 (5)0.021 (5)−0.037 (4)
C190.191 (11)0.111 (7)0.142 (9)−0.040 (7)0.023 (8)−0.055 (6)
C200.265 (17)0.138 (10)0.244 (16)−0.054 (11)0.022 (13)−0.074 (11)
C210.115 (6)0.093 (5)0.107 (6)−0.020 (5)0.028 (5)−0.019 (5)
O60.118 (4)0.129 (4)0.134 (4)−0.045 (4)0.065 (3)−0.047 (3)
Sn1—C172.103 (5)C10—C121.494 (9)
Sn1—C132.107 (6)C11—H110.9300
Sn1—O12.161 (4)C12—H12A0.9600
Sn1—O32.167 (4)C12—H12B0.9600
Sn1—N12.481 (4)C12—H12C0.9600
Sn1—N32.635 (5)C13—C141.392 (9)
Sn1—O52.770 (4)C13—H13A0.9700
N1—C21.331 (6)C13—H13B0.9700
N1—C51.337 (6)C14—C151.526 (8)
N2—C31.326 (7)C14—H14A0.9700
N2—C41.330 (8)C14—H14B0.9700
N3—C81.333 (6)C15—C161.473 (10)
N3—C111.337 (7)C15—H15A0.9700
N4—C101.317 (8)C15—H15B0.9700
N4—C91.334 (8)C16—H16A0.9600
O1—C11.288 (6)C16—H16B0.9600
O2—C11.215 (7)C16—H16C0.9600
O3—C71.278 (6)C17—C181.456 (8)
O4—C71.223 (6)C17—H17A0.9700
O5—H20.8500C17—H17B0.9700
O5—H10.8500C18—C191.558 (9)
C1—C21.498 (7)C18—H18A0.9700
C2—C31.383 (7)C18—H18B0.9700
C3—H30.9300C19—C201.369 (11)
C4—C51.395 (8)C19—H19A0.9700
C4—C61.498 (8)C19—H19B0.9700
C5—H50.9300C20—H20A0.9600
C6—H6A0.9600C20—H20B0.9600
C6—H6B0.9600C20—H20C0.9600
C6—H6C0.9600C21—O61.372 (8)
C7—C81.498 (8)C21—H21A0.9600
C8—C91.376 (8)C21—H21B0.9600
C9—H90.9300C21—H21C0.9600
C10—C111.390 (8)O6—H60.8200
C17—Sn1—C13161.7 (3)N4—C10—C12117.4 (6)
C17—Sn1—O1100.9 (2)C11—C10—C12121.0 (6)
C13—Sn1—O196.1 (2)N3—C11—C10121.9 (6)
C17—Sn1—O394.1 (2)N3—C11—H11119.0
C13—Sn1—O397.1 (2)C10—C11—H11119.0
O1—Sn1—O374.24 (14)C10—C12—H12A109.5
C17—Sn1—N189.9 (2)C10—C12—H12B109.5
C13—Sn1—N189.6 (2)H12A—C12—H12B109.5
O1—Sn1—N169.34 (14)C10—C12—H12C109.5
O3—Sn1—N1143.46 (14)H12A—C12—H12C109.5
C17—Sn1—N387.0 (2)H12B—C12—H12C109.5
C13—Sn1—N384.0 (2)C14—C13—Sn1125.0 (5)
O1—Sn1—N3141.33 (14)C14—C13—H13A106.1
O3—Sn1—N367.44 (15)Sn1—C13—H13A106.1
N1—Sn1—N3149.10 (14)C14—C13—H13B106.1
C17—Sn1—O575.89 (18)Sn1—C13—H13B106.1
C13—Sn1—O586.2 (2)H13A—C13—H13B106.3
O1—Sn1—O5145.38 (13)C13—C14—C15117.7 (7)
O3—Sn1—O5139.93 (13)C13—C14—H14A107.9
N1—Sn1—O576.15 (13)C15—C14—H14A107.9
N3—Sn1—O573.29 (13)C13—C14—H14B107.9
C2—N1—C5117.8 (5)C15—C14—H14B107.9
C2—N1—Sn1111.8 (3)H14A—C14—H14B107.2
C5—N1—Sn1130.4 (4)C16—C15—C14111.6 (7)
C3—N2—C4116.5 (5)C16—C15—H15A109.3
C8—N3—C11116.3 (5)C14—C15—H15A109.3
C8—N3—Sn1109.6 (3)C16—C15—H15B109.3
C11—N3—Sn1134.0 (4)C14—C15—H15B109.3
C10—N4—C9116.3 (6)H15A—C15—H15B108.0
C1—O1—Sn1125.1 (3)C15—C16—H16A109.5
C7—O3—Sn1128.4 (4)C15—C16—H16B109.5
H2—O5—Sn1138.8H16A—C16—H16B109.5
Sn1—O5—H1113.9C15—C16—H16C109.5
Sn1—O5—H2138.8H16A—C16—H16C109.5
H1—O5—H2105.0H16B—C16—H16C109.5
O2—C1—O1125.3 (5)C18—C17—Sn1116.8 (4)
O2—C1—C2119.2 (5)C18—C17—H17A108.1
O1—C1—C2115.5 (5)Sn1—C17—H17A108.1
N1—C2—C3119.9 (5)C18—C17—H17B108.1
N1—C2—C1116.8 (5)Sn1—C17—H17B108.1
C3—C2—C1123.3 (5)H17A—C17—H17B107.3
N2—C3—C2123.4 (6)C17—C18—C19110.5 (6)
N2—C3—H3118.3C17—C18—H18A109.6
C2—C3—H3118.3C19—C18—H18A109.6
N2—C4—C5121.1 (5)C17—C18—H18B109.6
N2—C4—C6118.0 (5)C19—C18—H18B109.6
C5—C4—C6120.9 (6)H18A—C18—H18B108.1
N1—C5—C4121.2 (6)C20—C19—C18116.0 (9)
N1—C5—H5119.4C20—C19—H19A108.3
C4—C5—H5119.4C18—C19—H19A108.3
C4—C6—H6A109.5C20—C19—H19B108.3
C4—C6—H6B109.5C18—C19—H19B108.3
H6A—C6—H6B109.5H19A—C19—H19B107.4
C4—C6—H6C109.5C19—C20—H20A109.5
H6A—C6—H6C109.5C19—C20—H20B109.5
H6B—C6—H6C109.5H20A—C20—H20B109.5
O4—C7—O3124.2 (6)C19—C20—H20C109.5
O4—C7—C8118.7 (5)H20A—C20—H20C109.5
O3—C7—C8117.2 (5)H20B—C20—H20C109.5
N3—C8—C9121.1 (5)O6—C21—H21A109.5
N3—C8—C7117.3 (5)O6—C21—H21B109.5
C9—C8—C7121.6 (5)H21A—C21—H21B109.5
N4—C9—C8122.8 (6)O6—C21—H21C109.5
N4—C9—H9118.6H21A—C21—H21C109.5
C8—C9—H9118.6H21B—C21—H21C109.5
N4—C10—C11121.6 (6)C21—O6—H6109.3
D—H···AD—HH···AD···AD—H···A
O5—H1···O60.851.922.755 (6)169
O5—H2···O1i0.852.193.039 (5)172
O6—H6···O4i0.821.932.703 (6)156
Table 1

Selected bond lengths (Å)

Sn1—C172.103 (5)
Sn1—C132.107 (6)
Sn1—O12.161 (4)
Sn1—O32.167 (4)
Sn1—N12.481 (4)
Sn1—N32.635 (5)
Sn1—O52.770 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H1⋯O60.851.922.755 (6)169
O5—H2⋯O1i0.852.193.039 (5)172
O6—H6⋯O4i0.821.932.703 (6)156

Symmetry code: (i) .

  2 in total

1.  Self-assembly of diorganotin(IV) moieties and 2-pyrazinecarboxylic acid: syntheses, characterizations and crystal structures of monomeric, polymeric or trinuclear macrocyclic compounds.

Authors:  Chunlin Ma; Yinfeng Han; Rufen Zhang; Daqi Wang
Journal:  Dalton Trans       Date:  2004-05-13       Impact factor: 4.390

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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